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6JLZ
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BU of 6jlz by Molmil
P-eIF2a - eIF2B complex
Descriptor: Eukaryotic translation initiation factor 2 subunit alpha, PHOSPHATE ION, Probable translation initiation factor eIF-2B subunit beta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2019-03-07
Release date:2019-05-01
Last modified:2019-05-15
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structural basis for eIF2B inhibition in integrated stress response.
Science, 364, 2019
6JLY
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BU of 6jly by Molmil
eIF2a - eIF2B complex
Descriptor: Eukaryotic translation initiation factor 2 subunit alpha, PHOSPHATE ION, Probable translation initiation factor eIF-2B subunit beta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2019-03-07
Release date:2019-05-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for eIF2B inhibition in integrated stress response.
Science, 364, 2019
6K72
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BU of 6k72 by Molmil
eIF2(aP) - eIF2B complex
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
Authors:Kashiwagi, K, Yokoyama, T, Ito, T.
Deposit date:2019-06-05
Release date:2019-07-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis for eIF2B inhibition in integrated stress response.
Science, 364, 2019
6K71
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BU of 6k71 by Molmil
eIF2 - eIF2B complex
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
Authors:Kashiwagi, K, Yokoyama, T, Ito, T.
Deposit date:2019-06-05
Release date:2019-07-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structural basis for eIF2B inhibition in integrated stress response.
Science, 364, 2019
5B04
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BU of 5b04 by Molmil
Crystal structure of the eukaryotic translation initiation factor 2B from Schizosaccharomyces pombe
Descriptor: PHOSPHATE ION, Probable translation initiation factor eIF-2B subunit beta, Probable translation initiation factor eIF-2B subunit delta, ...
Authors:Kashiwagi, K, Ito, T, Yokoyama, S.
Deposit date:2015-10-27
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.994 Å)
Cite:Crystal structure of eukaryotic translation initiation factor 2B
Nature, 531, 2016
7VLK
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BU of 7vlk by Molmil
eIF2B-SFSV NSs C2-imposed
Descriptor: Non-structural protein NS-S, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2021-10-04
Release date:2021-12-01
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (2.27 Å)
Cite:eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
3WJ9
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BU of 3wj9 by Molmil
Crystal structure of the eukaryotic initiation factor
Descriptor: Eukaryotic translation initiation factor 2A
Authors:Kashiwagi, K, Ito, T, Yokoyama, S.
Deposit date:2013-10-07
Release date:2014-03-12
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (2.506 Å)
Cite:Crystal structure of the eukaryotic translation initiation factor 2A from Schizosaccharomyces pombe.
J Struct Funct Genomics, 15, 2014
7F66
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BU of 7f66 by Molmil
eIF2B-SFSV NSs-1-eIF2
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, Non-structural protein NS-S, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2021-06-24
Release date:2021-12-01
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
7F67
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BU of 7f67 by Molmil
eIF2B-SFSV NSs-2-eIF2
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, Non-structural protein NS-S, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2021-06-24
Release date:2021-12-01
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
7F64
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BU of 7f64 by Molmil
eIF2B-SFSV NSs
Descriptor: Non-structural protein NS-S, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2021-06-24
Release date:2021-12-08
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (2.42 Å)
Cite:eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun, 12, 2021
7D45
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BU of 7d45 by Molmil
eIF2B-eIF2(aP), aP1 complex
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2020-09-22
Release date:2020-12-09
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7D44
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BU of 7d44 by Molmil
eIF2B-eIF2(aP), aP2 complex
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2020-09-22
Release date:2020-12-09
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7D46
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BU of 7d46 by Molmil
eIF2B apo
Descriptor: Translation initiation factor eIF-2B subunit alpha, Translation initiation factor eIF-2B subunit beta, Translation initiation factor eIF-2B subunit delta, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2020-09-22
Release date:2020-12-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4 Å)
Cite:ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
7D43
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BU of 7d43 by Molmil
eIF2B-eIF2(aP), aPg complex
Descriptor: Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 2, Eukaryotic translation initiation factor 2 subunit 3, ...
Authors:Kashiwagi, K, Ito, T.
Deposit date:2020-09-22
Release date:2020-12-09
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2B.
Mol.Cell, 81, 2021
1A99
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BU of 1a99 by Molmil
PUTRESCINE RECEPTOR (POTF) FROM E. COLI
Descriptor: 1,4-DIAMINOBUTANE, PUTRESCINE-BINDING PROTEIN
Authors:Vassylyev, D.G, Tomitori, H, Kashiwagi, K, Morikawa, K, Igarashi, K.
Deposit date:1998-04-17
Release date:1998-10-21
Last modified:2020-04-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and mutational analysis of the Escherichia coli putrescine receptor. Structural basis for substrate specificity.
J.Biol.Chem., 273, 1998
3WR7
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BU of 3wr7 by Molmil
Crystal Structure of Spermidine Acetyltransferase from Escherichia coli
Descriptor: COENZYME A, SPERMIDINE, Spermidine N1-acetyltransferase
Authors:Sugiyama, S, Ishikawa, S, Tomitori, S, Niiyama, M, Hirose, M, Miyazaki, Y, Higashi, K, Adachi, H, Takano, K, Murakami, S, Inoue, T, Mori, Y, Kashiwagi, K, Igarashi, K, Matsumura, H.
Deposit date:2014-02-20
Release date:2015-09-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase
Int.J.Biochem.Cell Biol., 76, 2016
7F5S
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BU of 7f5s by Molmil
human delta-METTL18 60S ribosome
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Takahashi, M, Kashiwagi, K, Ito, T.
Deposit date:2021-06-22
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance.
Elife, 11, 2022
1POT
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BU of 1pot by Molmil
SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (MONOMER FORM)
Descriptor: SPERMIDINE, SPERMIDINE/PUTRESCINE-BINDING PROTEIN
Authors:Sugiyama, S, Maenaka, K, Matsushima, M, Morikawa, K.
Deposit date:1996-02-02
Release date:1996-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.8-A X-ray structure of the Escherichia coli PotD protein complexed with spermidine and the mechanism of polyamine binding.
Protein Sci., 5, 1996
1POY
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BU of 1poy by Molmil
SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (DIMER FORM)
Descriptor: SPERMIDINE, SPERMIDINE/PUTRESCINE-BINDING PROTEIN
Authors:Sugiyama, S, Vassylyev, D.G, Matsushima, M, Morikawa, K.
Deposit date:1996-02-02
Release date:1996-07-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of PotD, the primary receptor of the polyamine transport system in Escherichia coli.
J.Biol.Chem., 271, 1996
7VGT
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BU of 7vgt by Molmil
Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3: resting state structure with bromide ion
Descriptor: BROMIDE ION, Chloride pumping rhodopsin, DECANE, ...
Authors:Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M.
Deposit date:2021-09-18
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VGV
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BU of 7vgv by Molmil
Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure determined by serial femtosecond crystallography at SACLA
Descriptor: CHLORIDE ION, Chloride pumping rhodopsin, HEXADECANE, ...
Authors:Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M.
Deposit date:2021-09-18
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Proc.Natl.Acad.Sci.USA, 119, 2022
7VGU
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BU of 7vgu by Molmil
Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3 : structure obtained 1 msec after photoexcitation with bromide ion
Descriptor: BROMIDE ION, Chloride pumping rhodopsin, DECANE, ...
Authors:Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M.
Deposit date:2021-09-18
Release date:2022-02-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.
Proc.Natl.Acad.Sci.USA, 119, 2022

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