Author results

2EIH
  • Download 2eih
  • View 2eih
Molmil generated image of 2eih
CRYSTAL STRUCTURE OF NAD-DEPENDENT ALCOHOL DEHYDROGENASE
Descriptor:Alcohol dehydrogenase, ZINC ION
Authors:Kamiya, N., Hikima, T., Matsu, T., Maoka, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-13
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure analysis of putative NAD-dependent alcohol dehydrogenase from Thermus thermophilus HB8
To be published
1IZL
  • Download 1izl
  • View 1izl
Molmil generated image of 1izl
CRYSTAL STRUCTURE OF PHOTOSYSTEM II
Descriptor:Photosystem II: Subunit PsbA, Photosystem II: Subunit PsbB, Photosystem II: Subunit PsbC, ...
Authors:Kamiya, N., Shen, J.-R.
Deposit date:2002-10-04
Release date:2003-01-14
Last modified:2012-11-28
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution
Proc.Natl.Acad.Sci.USA, 100, 2003
2EHD
  • Download 2ehd
  • View 2ehd
Molmil generated image of 2ehd
CRYSTAL STRUCTURE ANALYSIS OF OXIDOREDUCTASE
Descriptor:Oxidoreductase, short-chain dehydrogenase/reductase family, COBALT (II) ION
Authors:Kamiya, N., Hikima, T., Ebihara, A., Inoue, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-06
Release date:2008-03-11
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure analysis of putative oxidoreductase from Thermus thermophilus HB8
to be published
1WVP
  • Download 1wvp
  • View 1wvp
Molmil generated image of 1wvp
STRUCTURE OF CHEMICALLY MODIFIED MYOGLOBIN WITH DISTAL N-TETRAZOLYL-HISTIDINE E7(64)
Descriptor:Myoglobin, SULFATE ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Makino, M., Sugimoto, H., Kamiya, N., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-23
Release date:2005-01-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Heme environmental structure of a novel artificial myoglobin with a closed heme pocket: site-specific chemical modification producing distal N-tetrazolylhistidine E7 by cyanogen bromide and azide ion
J.Am.Chem.Soc., 113, 1991
2AHJ
  • Download 2ahj
  • View 2ahj
Molmil generated image of 2ahj
NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE
Descriptor:NITRILE HYDRATASE, FE (III) ION, ZINC ION, ...
Authors:Nagashima, S., Nakasako, M., Dohmae, N., Tsujimura, M., Takio, K., Odaka, M., Yohda, M., Kamiya, N., Endo, I.
Deposit date:1997-12-24
Release date:1999-01-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.
Nat.Struct.Biol., 5, 1998
1DZE
  • Download 1dze
  • View 1dze
Molmil generated image of 1dze
STRUCTURE OF THE M INTERMEDIATE OF BACTERIORHODOPSIN TRAPPED AT 100K
Descriptor:BACTERIORHODOPSIN (M INTERMEDIATE), RETINAL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
Authors:Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Iizuka, T., Kamiya, N., Adachi, S., Kouyama, T.
Deposit date:2000-02-25
Release date:2000-08-16
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the M Intermediate of Bacteriorhodopsin: Allosteric Structural Changes Mediated by Sliding Movement of a Transmembrane Helix
J.Mol.Biol., 341, 2004
1IUB
  • Download 1iub
  • View 1iub
Molmil generated image of 1iub
FUCOSE-SPECIFIC LECTIN FROM ALEURIA AURANTIA (HG-DERIVATIVE FORM)
Descriptor:Fucose-specific lectin, BETA-L-FUCOSE, SULFATE ION, ...
Authors:Fujihashi, M., Peapus, D.H., Kamiya, N., Nagata, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-01
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites
Biochemistry, 42, 2003
1IUC
  • Download 1iuc
  • View 1iuc
Molmil generated image of 1iuc
FUCOSE-SPECIFIC LECTIN FROM ALEURIA AURANTIA WITH THREE LIGANDS
Descriptor:Fucose-specific lectin, BETA-L-FUCOSE, ALPHA-L-FUCOSE, ...
Authors:Fujihashi, M., Peapus, D.H., Kamiya, N., Nagata, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-01
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites
Biochemistry, 42, 2003
1UM9
  • Download 1um9
  • View 1um9
Molmil generated image of 1um9
BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN APO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, SULFATE ION
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMB
  • Download 1umb
  • View 1umb
Molmil generated image of 1umb
BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 IN HOLO-FORM
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMC
  • Download 1umc
  • View 1umc
Molmil generated image of 1umc
BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 WITH 4-METHYLPENTANOATE
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1UMD
  • Download 1umd
  • View 1umd
Molmil generated image of 1umd
BRANCHED-CHAIN 2-OXO ACID DEHYDROGENASE (E1) FROM THERMUS THERMOPHILUS HB8 WITH 4-METHYL-2-OXOPENTANOATE AS AN INTERMEDIATE
Descriptor:2-oxo acid dehydrogenase alpha subunit, 2-oxo acid dehydrogenase beta subunit, MAGNESIUM ION, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-25
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand-induced Conformational Changes and a Reaction Intermediate in Branched-chain 2-Oxo Acid Dehydrogenase (E1) from Thermus thermophilus HB8, as Revealed by X-ray Crystallography
J.Mol.Biol., 337, 2004
1WYT
  • Download 1wyt
  • View 1wyt
Molmil generated image of 1wyt
CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN APO FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYU
  • Download 1wyu
  • View 1wyu
Molmil generated image of 1wyu
CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN HOLO FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein), PYRIDOXAL-5'-PHOSPHATE
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
1WYV
  • Download 1wyv
  • View 1wyv
Molmil generated image of 1wyv
CRYSTAL STRUCTURE OF GLYCINE DECARBOXYLASE (P-PROTEIN) OF THE GLYCINE CLEAVAGE SYSTEM, IN INHIBITOR-BOUND FORM
Descriptor:glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein), PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Nakai, T., Nakagawa, N., Maoka, N., Masui, R., Kuramitsu, S., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-17
Release date:2005-04-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
5ZNO
  • Download 5zno
  • View 5zno
Molmil generated image of 5zno
CRYSTAL STRUCTURE OF PET-DEGRADING CUTINASE CUT190 S176A/S226P/R228S/ MUTANT IN CA(2+)-BOUND STATE
Descriptor:Alpha/beta hydrolase family protein, CALCIUM ION, GLYCEROL
Authors:Numoto, N., Inaba, S., Yamagami, Y., Kamiya, N., Bekker, G.J., Ishii, K., Uchiyama, S., Kawai, F., Ito, N., Oda, M.
Deposit date:2018-04-10
Release date:2018-09-12
Last modified:2018-09-26
Method:X-RAY DIFFRACTION (1.602643 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
5ZRQ
  • Download 5zrq
  • View 5zrq
Molmil generated image of 5zrq
CRYSTAL STRUCTURE OF PET-DEGRADING CUTINASE CUT190 S176A/S226P/R228S MUTANT IN ZN(2+)-BOUND STATE
Descriptor:Alpha/beta hydrolase family protein, ZINC ION, CALCIUM ION, ...
Authors:Numoto, N., Kamiya, N., Bekker, G.J., Yamagami, Y., Inaba, S., Ishii, K., Uchiyama, S., Kawai, F., Ito, N., Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2018-09-26
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
5ZRR
  • Download 5zrr
  • View 5zrr
Molmil generated image of 5zrr
CRYSTAL STRUCTURE OF PET-DEGRADING CUTINASE CUT190 S176A/S226P/R228S MUTANT IN MONOETHYL SUCCINATE BOUND STATE
Descriptor:Alpha/beta hydrolase family protein, 4-ethoxy-4-oxobutanoic acid, ZINC ION, ...
Authors:Numoto, N., Kamiya, N., Bekker, G.J., Yamagami, Y., Inaba, S., Ishii, K., Uchiyama, S., Kawai, F., Ito, N., Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2018-09-26
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
5ZRS
  • Download 5zrs
  • View 5zrs
Molmil generated image of 5zrs
CRYSTAL STRUCTURE OF PET-DEGRADING CUTINASE CUT190 S176A/S226P/R228S MUTANT IN MONOETHYL ADIPATE BOUND STATE
Descriptor:Alpha/beta hydrolase family protein, 6-ethoxy-6-oxohexanoic acid, ZINC ION, ...
Authors:Numoto, N., Kamiya, N., Bekker, G.J., Yamagami, Y., Inaba, S., Ishii, K., Uchiyama, S., Kawai, F., Ito, N., Oda, M.
Deposit date:2018-04-25
Release date:2018-09-12
Last modified:2018-09-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.
Biochemistry, 57, 2018
1ISR
  • Download 1isr
  • View 1isr
Molmil generated image of 1isr
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH GLUTAMATE AND GADOLINIUM ION
Descriptor:Metabotropic Glutamate Receptor subtype 1, GLUTAMIC ACID, GADOLINIUM ATOM
Authors:Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.
Deposit date:2001-12-21
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.
Proc.Natl.Acad.Sci.USA, 99, 2002
1ISS
  • Download 1iss
  • View 1iss
Molmil generated image of 1iss
CRYSTAL STRUCTURE OF METABOTROPIC GLUTAMATE RECEPTOR SUBTYPE 1 COMPLEXED WITH AN ANTAGONIST
Descriptor:Metabotropic Glutamate Receptor subtype 1, (S)-(ALPHA)-METHYL-4-CARBOXYPHENYLGLYCINE
Authors:Tsuchiya, D., Kunishima, N., Kamiya, N., Jingami, H., Morikawa, K.
Deposit date:2001-12-21
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.
Proc.Natl.Acad.Sci.USA, 99, 2002
2ZCF
  • Download 2zcf
  • View 2zcf
Molmil generated image of 2zcf
MUTATIONAL STUDY ON ALPHA-GLN90 OF FE-TYPE NITRILE HYDRATASE FROM RHODOCOCCUS SP. N771
Descriptor:Nitrile hydratase subunit alpha, Nitrile hydratase subunit beta, FE (III) ION, ...
Authors:Takarada, H., Kawano, Y., Hashimoto, K., Nakayama, H., Ueda, S., Yohda, M., Kamiya, N., Dohmae, N., Maeda, M., Odaka, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Mutational study on alphaGln90 of Fe-type nitrile hydratase from Rhodococcus sp. N771
Biosci.Biotechnol.Biochem., 70, 2006
4TWZ
  • Download 4twz
  • View 4twz
Molmil generated image of 4twz
CRYSTAL STRUCTURE ANALYSIS OF E COLI. RECA PROTEIN
Descriptor:Protein RecA, MAGNESIUM ION
Authors:Hikima, T., Hiraki, T., Furuse, M., Ikawa, S., Iwasaki, W., Shibata, T., Kamiya, N.
Deposit date:2014-07-02
Release date:2015-07-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Loop L1 governs the DNA-binding specificity and order for RecA-catalyzed reactions in homologous recombination and DNA repair
Nucleic Acids Res., 43, 2015
1BM1
  • Download 1bm1
  • View 1bm1
Molmil generated image of 1bm1
CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
Descriptor:BACTERIORHODOPSIN, RETINAL, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER
Authors:Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.
Deposit date:1998-07-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
1C0F
  • Download 1c0f
  • View 1c0f
Molmil generated image of 1c0f
CRYSTAL STRUCTURE OF DICTYOSTELIUM CAATP-ACTIN IN COMPLEX WITH GELSOLIN SEGMENT 1
Descriptor:GELSOLIN SEGMENT 1, ACTIN, CALCIUM ION, ...
Authors:Matsuura, Y., Stewart, M., Kawamoto, M., Kamiya, N., Saeki, K., Yasunaga, T., Wakabayashi, T.
Deposit date:1999-07-16
Release date:2000-03-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the higher Ca(2+)-activation of the regulated actin-activated myosin ATPase observed with Dictyostelium/Tetrahymena actin chimeras
J.Mol.Biol., 296, 2000