Author results

1JI2
  • Download 1ji2
  • View 1ji2
Molmil generated image of 1ji2
IMPROVED X-RAY STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 2
Descriptor:ALPHA-AMYLASE II, CALCIUM ION
Authors:Kamitori, S., Abe, A., Ohtaki, A., Kaji, A., Tonozuka, T., Sakano, Y.
Deposit date:2001-06-28
Release date:2002-06-05
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
J.Mol.Biol., 318, 2002
2EIS
  • Download 2eis
  • View 2eis
Molmil generated image of 2eis
X-RAY STRUCTURE OF ACYL-COA HYDROLASE-LIKE PROTEIN, TT1379, FROM THERMUS THERMOPHILUS HB8
Descriptor:Hypothetical protein TTHB207, COENZYME A
Authors:Kamitori, S., Yoshida, H., Satoh, S., Iino, H., Ebihara, A., Chen, L., Fu, Z.-Q., Chrzas, J., Wang, B.-C., Yokoyama, S., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-13
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray structure of acyl-CoA hydrolase-like protein, TT1379, from Thermus thermophilus HB8
To be Published
1BVZ
  • Download 1bvz
  • View 1bvz
Molmil generated image of 1bvz
ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47
Descriptor:PROTEIN (ALPHA-AMYLASE II)
Authors:Kamitori, S., Kondo, S., Okuyama, K., Yokota, T., Shimura, Y., Tonozuka, T., Sakano, Y.
Deposit date:1998-09-22
Release date:1999-03-02
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution.
J.Mol.Biol., 287, 1999
2GS9
  • Download 2gs9
  • View 2gs9
Molmil generated image of 2gs9
CRYSTAL STRUCTURE OF TT1324 FROM THERMUS THERMOPHILIS HB8
Descriptor:Hypothetical protein TT1324, S-ADENOSYL-L-HOMOCYSTEINE, FORMIC ACID
Authors:Kamitori, S., Abe, A., Ebihara, A., Kanagawa, M., Nakagawa, N., Kuroishi, C., Agari, Y., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-25
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of TT1324 from Thermus thermophilis HB8
To be Published
172D
  • Download 172d
  • View 172d
Molmil generated image of 172d
MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA
Descriptor:DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
Authors:Kamitori, S., Takusagawa, F.
Deposit date:1994-04-18
Release date:1994-10-15
Last modified:2012-02-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of d(GAAGCTTC)2-Actinomycin D Complexes and Its Host DNA
J.Am.Chem.Soc., 116, 1994
173D
  • Download 173d
  • View 173d
Molmil generated image of 173d
MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA
Descriptor:DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3'), ACTINOMYCIN D
Authors:Kamitori, S., Takusagawa, F.
Deposit date:1994-04-18
Release date:1994-10-15
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA
J.Am.Chem.Soc., 116, 1994
1IZD
  • Download 1izd
  • View 1izd
Molmil generated image of 1izd
CRYSTAL STRUCTURE OF ASPERGILLUS ORYZAE ASPARTIC PROTEINASE
Descriptor:Aspartic proteinase, ALPHA-D-MANNOSE
Authors:Kamitori, S., Ohtaki, A., Ino, H., Takeuchi, M.
Deposit date:2002-10-02
Release date:2003-03-04
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Aspergillus oryzae Aspartic Proteinase and its Complex with an Inhibitor Pepstatin at 1.9 A Resolution
J.Mol.Biol., 326, 2003
1IZE
  • Download 1ize
  • View 1ize
Molmil generated image of 1ize
CRYSTAL STRUCTURE OF ASPERGILLUS ORYZAE ASPARTIC PROTEINASE COMPLEXED WITH PEPSTATIN
Descriptor:aspartic proteinase, Pepstatin, ALPHA-D-MANNOSE
Authors:Kamitori, S., Ohtaki, A., Ino, H., Takeuchi, M.
Deposit date:2002-10-02
Release date:2003-03-04
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of Aspergillus oryzae aspartic proteinase and its complex with an inhibitor pepstatin at 1.9A resolution.
J.Mol.Biol., 326, 2003
1JI1
  • Download 1ji1
  • View 1ji1
Molmil generated image of 1ji1
CRYSTAL STRUCTURE ANALYSIS OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE 1
Descriptor:ALPHA-AMYLASE I, CALCIUM ION
Authors:Kamitori, S., Abe, A., Ohtaki, A., Kaji, A., Tonozuka, T., Sakano, Y.
Deposit date:2001-06-28
Release date:2002-06-05
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
J.Mol.Biol., 318, 2002
1UJM
  • Download 1ujm
  • View 1ujm
Molmil generated image of 1ujm
CRYSTAL STRUCTURE OF ALDEHYDE REDUCTASE 2 FROM SPOROBOLOMYCES SALMONICOLOR AKU4429
Descriptor:Aldehyde reductase II, SULFATE ION
Authors:Kamitori, S., Iguchi, A., Ohtaki, A., Kita, K.
Deposit date:2003-08-06
Release date:2004-10-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of aldehyde reductase 2 from Sporobolomyces salmonicolor AKU4429 at 2.0 A resolution
To be Published
1Y1P
  • Download 1y1p
  • View 1y1p
Molmil generated image of 1y1p
X-RAY STRUCTURE OF ALDEHYDE REDUCTASE WITH NADPH
Descriptor:Aldehyde reductase II, SULFATE ION, ACETATE ION, ...
Authors:Kamitori, S., Kita, K.
Deposit date:2004-11-19
Release date:2005-09-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray Structures of NADPH-dependent Carbonyl Reductase from Sporobolomyces salmonicolor Provide Insights into Stereoselective Reductions of Carbonyl Compounds
J.Mol.Biol., 352, 2005
1ZZE
  • Download 1zze
  • View 1zze
Molmil generated image of 1zze
X-RAY STRUCTURE OF NADPH-DEPENDENT CARBONYL REDUCTASE FROM SPOROBOLOMYCES SALMONICOLOR
Descriptor:Aldehyde reductase II, SULFATE ION
Authors:Kamitori, S., Iguchi, A., Ohtaki, A., Yamada, M., Kita, K.
Deposit date:2005-06-14
Release date:2005-09-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray Structures of NADPH-dependent Carbonyl Reductase from Sporobolomyces salmonicolor Provide Insights into Stereoselective Reductions of Carbonyl Compounds
J.Mol.Biol., 352, 2005
3VKL
  • Download 3vkl
  • View 3vkl
Molmil generated image of 3vkl
PROTEASE-RESISTANT MUTANT FORM OF HUMAN GALECTIN-8 IN COMPLEX WITH TWO LACTOSE MOLECULES
Descriptor:Galectin-8, BETA-D-GALACTOSE, BETA-D-GLUCOSE, ...
Authors:Kamitori, S., Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3VKN
  • Download 3vkn
  • View 3vkn
Molmil generated image of 3vkn
GALECTIN-8 N-TERMINAL DOMAIN IN FREE FORM
Descriptor:Galectin-8, CHLORIDE ION
Authors:Kamitori, S., Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
3VKO
  • Download 3vko
  • View 3vko
Molmil generated image of 3vko
GALECTIN-8 N-TERMINAL DOMAIN IN COMPLEX WITH SIALYLLACTOSAMINE
Descriptor:Galectin-8, O-SIALIC ACID, BETA-D-GALACTOSE, ...
Authors:Kamitori, S., Yoshida, H.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2013-07-03
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
2D58
  • Download 2d58
  • View 2d58
Molmil generated image of 2d58
HUMAN MICROGLIA-SPECIFIC PROTEIN IBA1
Descriptor:Allograft inflammatory factor 1, NICKEL (II) ION
Authors:Kamitori, S.
Deposit date:2005-10-31
Release date:2006-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding
J.Mol.Biol., 364, 2006
4KRT
  • Download 4krt
  • View 4krt
Molmil generated image of 4krt
X-RAY STRUCTURE OF ENDOLYSIN FROM CLOSTRIDIUM PERFRINGENS PHAGE PHISM101
Descriptor:Autolytic lysozyme, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, ...
Authors:Kamitori, S., Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2015-04-29
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens
Mol.Microbiol., 2014
4KRU
  • Download 4kru
  • View 4kru
Molmil generated image of 4kru
X-RAY STRUCTURE OF CATALYTIC DOMAIN OF ENDOLYSIN FROM CLOSTRIDIUM PERFRINGENS PHAGE PHISM101
Descriptor:Autolytic lysozyme, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Kamitori, S., Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens
Mol.Microbiol., 2014
5XCB
  • Download 5xcb
  • View 5xcb
Molmil generated image of 5xcb
X-RAY STRUCTURE OF DOMAINS D1 AND D2 OF CLOSTRIDIUM PERFRINGENS PILI PROTEIN CPPA
Descriptor:Probable surface protein
Authors:Kamitori, S., Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
5XCC
  • Download 5xcc
  • View 5xcc
Molmil generated image of 5xcc
X-RAY STRUCTURE OF CLOSTRIDIUM PERFRINGENS PILI PROTEIN CPPA
Descriptor:Probable surface protein
Authors:Kamitori, S., Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6IXY
  • Download 6ixy
  • View 6ixy
Molmil generated image of 6ixy
X-RAY STRUCTURE OF MAJOR PILIN FROM C. PERFRINGENS SM101
Descriptor:pilin
Authors:Kamitori, S., Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6IXZ
  • Download 6ixz
  • View 6ixz
Molmil generated image of 6ixz
X-RAY STRUCTURE OF SORTASE C FROM CLOSTRIDIUM PERFRINGENS SM101
Descriptor:Sortase family protein
Authors:Kamitori, S., Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
3B4X
  • Download 3b4x
  • View 3b4x
Molmil generated image of 3b4x
CRYSTAL STRUCTURE ANALYSIS OF SULFOLOBUS TOKODAII STRAIN7 CYTOCHROM P450
Descriptor:367aa long hypothetical cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kamitori, S., Yoshida, H., Ohtaki, A., Nakamura, N.
Deposit date:2007-10-24
Release date:2008-11-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Monooxygenation by Thermophilic Cytochrome P450 via Direct Electron Transfer from NADH without Redox Partner
To be Published
5B23
  • Download 5b23
  • View 5b23
Molmil generated image of 5b23
X-RAY STRUCTURE OF CLOSTRIDIUM PERFRINGENS SORTASE B
Descriptor:Uncharacterized protein Sortase B
Authors:Kamitori, S., Yoshida, H., Tamai, E.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017
5YFK
  • Download 5yfk
  • View 5yfk
Molmil generated image of 5yfk
X-RAY STRUCTURE OF A MUTANT FORM C232S OF CLOSTRIDIUM PERFRINGENS SORTASE B
Descriptor:Uncharacterized protein Sortase B
Authors:Kamitori, S., Tamai, E.
Deposit date:2017-09-21
Release date:2017-10-18
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017