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1ECR
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BU of 1ecr by Molmil
ESCHERICHIA COLI REPLICATION TERMINATOR PROTEIN (TUS) COMPLEXED WITH DNA
Descriptor: DNA (5'-D(*TP*AP*GP*TP*AP*TP*GP*TP*TP*GP*TP*AP*AP*CP*TP*A)-3, DNA (5'-D(*TP*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3, PROTEIN (REPLICATION-TERMINATOR PROTEIN)
Authors:Kamada, K, Morikawa, K.
Deposit date:1996-09-01
Release date:1997-09-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a replication-terminator protein complexed with DNA.
Nature, 383, 1996
1UB4
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BU of 1ub4 by Molmil
crystal structure of MazEF complex
Descriptor: MazE protein, MazF protein
Authors:Kamada, K, Hanaoka, F, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2003-03-28
Release date:2003-05-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the MazE/MazF Complex. Molecular Bases of Antidote-Toxin Recognition
Mol.Cell, 11, 2003
1J2X
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BU of 1j2x by Molmil
Crystal structure of RAP74 C-terminal domain complexed with FCP1 C-terminal peptide
Descriptor: RNA polymerase II CTD phosphatase, SULFATE ION, Transcription initiation factor IIF, ...
Authors:Kamada, K, Roeder, R.G, Burley, S.K.
Deposit date:2003-01-15
Release date:2003-01-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF
Proc.Natl.Acad.Sci.USA, 100, 2003
1I27
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BU of 1i27 by Molmil
CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF THE RAP74 SUBUNIT OF HUMAN TRANSCRIPTION FACTOR IIF (TFIIF)
Descriptor: TRANSCRIPTION FACTOR IIF, ZINC ION
Authors:Kamada, K, De Angelis, J, Roeder, R.G, Burley, S.K.
Deposit date:2001-02-07
Release date:2001-03-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF.
Proc.Natl.Acad.Sci.USA, 98, 2001
1JFI
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BU of 1jfi by Molmil
Crystal Structure of the NC2-TBP-DNA Ternary Complex
Descriptor: 5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3', 5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3', TATA-BOX-BINDING PROTEIN (TBP), ...
Authors:Kamada, K, Shu, F, Chen, H, Malik, S, Stelzer, G, Roeder, R.G, Meisterernst, M, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2001-06-20
Release date:2001-07-11
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex.
Cell(Cambridge,Mass.), 106, 2001
3W6J
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BU of 3w6j by Molmil
Crystal structure of ScpAB core complex
Descriptor: ScpA, ScpB
Authors:Kamada, K, Hirano, T.
Deposit date:2013-02-15
Release date:2013-04-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB
Structure, 21, 2013
3W6K
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BU of 3w6k by Molmil
Crystal structure of dimer of ScpB N-terminal domain complexed with ScpA peptide
Descriptor: ScpA, ScpB
Authors:Kamada, K, Hirano, T.
Deposit date:2013-02-15
Release date:2013-04-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.374 Å)
Cite:Molecular basis of SMC ATPase activation: role of internal structural changes of the regulatory subcomplex ScpAB
Structure, 21, 2013
2A6Q
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BU of 2a6q by Molmil
Crystal structure of YefM-YoeB complex
Descriptor: Antitoxin yefM, Toxin yoeB
Authors:Kamada, K, Hanaoka, F.
Deposit date:2005-07-04
Release date:2005-08-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational Change in the Catalytic Site of the Ribonuclease YoeB Toxin by YefM Antitoxin
Mol.Cell, 19, 2005
2E9X
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BU of 2e9x by Molmil
The crystal structure of human GINS core complex
Descriptor: DNA replication complex GINS protein PSF1, DNA replication complex GINS protein PSF2, GINS complex subunit 3, ...
Authors:Kamada, K, Hanaoka, F.
Deposit date:2007-01-27
Release date:2007-04-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the human GINS complex and its assembly and functional interface in replication initiation
Nat.Struct.Mol.Biol., 14, 2007
5H69
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BU of 5h69 by Molmil
Crystal structure of an asymmetric dimer of the Geobacillus stearothermophilus SMC hinge domain
Descriptor: Chromosome partition protein Smc
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2004 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
5H66
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BU of 5h66 by Molmil
Crystal structure of the Bacillus subtilis SMC head domain complexed with the cognate ScpA C-terminal domain
Descriptor: Chromosome partition protein Smc, Segregation and condensation protein A
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82194769 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
5H67
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BU of 5h67 by Molmil
Crystal structure of the Bacillus subtilis SMC head domain complexed with the cognate ScpA C-terminal domain and soaked ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chromosome partition protein Smc, Segregation and condensation protein A
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.072035 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
5H68
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BU of 5h68 by Molmil
Crystal structure of an engaged dimer of the Geobacillus stearothermophilus SMC head domain
Descriptor: Chromosome partition protein Smc, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
Authors:Kamada, K, Hirano, T.
Deposit date:2016-11-11
Release date:2017-03-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:Overall Shapes of the SMC-ScpAB Complex Are Determined by Balance between Constraint and Relaxation of Its Structural Parts
Structure, 25, 2017
2A6S
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BU of 2a6s by Molmil
Crystal structure of YoeB under isopropanol condition
Descriptor: ISOPROPYL ALCOHOL, Toxin yoeB
Authors:Kamada, K, Hanaoka, F.
Deposit date:2005-07-04
Release date:2005-08-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Conformational Change in the Catalytic Site of the Ribonuclease YoeB Toxin by YefM Antitoxin
Mol.Cell, 19, 2005
2A6R
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BU of 2a6r by Molmil
Crystal structure of YoeB under PEG condition
Descriptor: MAGNESIUM ION, Toxin yoeB
Authors:Kamada, K, Hanaoka, F.
Deposit date:2005-07-04
Release date:2005-08-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational Change in the Catalytic Site of the Ribonuclease YoeB Toxin by YefM Antitoxin
Mol.Cell, 19, 2005
7X8Y
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BU of 7x8y by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab159
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ab159 heavy chain, Ab159 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Iscience, 25, 2022
7X8W
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BU of 7x8w by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab354
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ab354 heavy chain, Ab354 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Iscience, 25, 2022
7X8Z
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BU of 7x8z by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab188
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ab188 heavy chain, Ab188 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Iscience, 25, 2022
7X90
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BU of 7x90 by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab326
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ab326 heavy chain, Ab326 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Iscience, 25, 2022
7X91
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BU of 7x91 by Molmil
The SARS-CoV-2 receptor binding domain bound with an Fv-clasp form of a human neutralizing antibody Ab496
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, An Fv-clasp version of the Ab496 heavy chain, An Fv-clasp version of the Ab496 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Iscience, 25, 2022
7X92
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BU of 7x92 by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab445
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ab445 heavy chain, Ab445 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2022-12-07
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models.
Iscience, 25, 2022
7X95
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BU of 7x95 by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab709
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ab709 heavy chain, Ab709 light chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2023-03-22
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023
7X93
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BU of 7x93 by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab765
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ab765 heavy chain, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2023-03-22
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023
7X96
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BU of 7x96 by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab847
Descriptor: Ab847 heavy chain, Ab847 light chain, Spike glycoprotein, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2023-03-22
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023
7X94
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BU of 7x94 by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab712
Descriptor: Ab712 heavy chain, Ab712 light chain, Spike glycoprotein, ...
Authors:Kamada, K, Shirouzu, M.
Deposit date:2022-03-15
Release date:2023-03-22
Last modified:2023-09-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023

 

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