Author results

1AQU
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ESTROGEN SULFOTRANSFERASE WITH BOUND INACTIVE COFACTOR PAP AND 17-BETA ESTRADIOL
Descriptor:ESTROGEN SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE, ESTRADIOL
Authors:Kakuta, Y., Negishi, M., Pedersen, L.C.
Deposit date:1997-08-01
Release date:1998-10-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
1AQY
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ESTROGEN SULFOTRANSFERASE WITH PAP
Descriptor:ESTROGEN SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Kakuta, Y., Pedersen, L.G., Carter, C.W., Negishi, M., Pedersen, L.C.
Deposit date:1997-08-04
Release date:1998-10-28
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
1BO6
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ESTROGEN SULFOTRANSFERASE WITH INACTIVE COFACTOR PAP AND VANADATE
Descriptor:ESTROGEN SULFOTRANSFERASE, VANADATE ION, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Kakuta, Y., Negishi, M., Pedersen, L.C.
Deposit date:1998-08-10
Release date:1999-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The sulfuryl transfer mechanism. Crystal structure of a vanadate complex of estrogen sulfotransferase and mutational analysis.
J.Biol.Chem., 273, 1998
1NST
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THE SULFOTRANSFERASE DOMAIN OF HUMAN HAPARIN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
Descriptor:HEPARAN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE
Authors:Kakuta, Y., Pedersen, L.C., Negishi, M.
Deposit date:1998-09-07
Release date:1999-09-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the sulfotransferase domain of human heparan sulfate N-deacetylase/ N-sulfotransferase 1.
J.Biol.Chem., 274, 1999
1CJM
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HUMAN SULT1A3 WITH SULFATE BOUND
Descriptor:PROTEIN (ARYL SULFOTRANSFERASE), SULFATE ION
Authors:Bidwell, L.M., Mcmanus, M.E., Gaedigk, A., Kakuta, Y., Negishi, M., Pedersen, L., Martin, J.L.
Deposit date:1999-04-18
Release date:1999-11-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human catecholamine sulfotransferase.
J.Mol.Biol., 293, 1999
1DVE
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CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME
Descriptor:HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M., Omata, Y., Kakuta, Y., Sakamoto, H., Noguchi, M., Fukuyama, K.
Deposit date:2000-01-20
Release date:2000-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
1DVG
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CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME; SELELENO-METHIONINE DERIVATIVE, MUTATED AT M51T,M93L,M155L,M191L.
Descriptor:HEME OXYGENASE-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M., Omata, Y., Kakuta, Y., Sakamoto, H., Noguchi, M., Fukuyama, K.
Deposit date:2000-01-20
Release date:2000-04-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett., 471, 2000
1IQZ
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1I7H
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CRYSTAL STURCUTURE OF FDX
Descriptor:FERREDOXIN, FE2/S2 (INORGANIC) CLUSTER
Authors:Kakuta, Y., Horio, T., Takahashi, Y., Fukuyama, K.
Deposit date:2001-03-09
Release date:2002-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
1IR6
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CRYSTAL STRUCTURE OF EXONUCLEASE RECJ BOUND TO MANGANESE
Descriptor:exonuclease RecJ, MANGANESE (II) ION
Authors:Yamagata, A., Kakuta, Y., Masui, R., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2001-09-11
Release date:2002-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
Proc.Natl.Acad.Sci.USA, 99, 2002
1IRM
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CRYSTAL STRUCTURE OF APO HEME OXYGENASE-1
Descriptor:apo heme oxygenase-1
Authors:Sugishima, M., Sakamoto, H., Kakuta, Y., Omata, Y., Hayashi, S., Noguchi, M., Fukuyama, K.
Deposit date:2001-10-09
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of rat apo-heme oxygenase-1 (HO-1): mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms
Biochemistry, 41, 2002
1UCG
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CRYSTAL STRUCTURE OF RIBONUCLEASE MC1 N71T MUTANT
Descriptor:Ribonuclease MC, MANGANESE (II) ION
Authors:Suzuki, A., Numata, T., Yao, M., Tanaka, I., Kimura, M.
Deposit date:2003-04-14
Release date:2003-04-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
1J1F
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71T IN COMPLEX WITH 5'-GMP
Descriptor:RIBONUCLEASE MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1G
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT N71S IN COMPLEX WITH 5'-GMP
Descriptor:Ribonuclease MC1, GUANOSINE-5'-MONOPHOSPHATE
Authors:Numata, T., Suzuki, A., Kakuta, Y., Kimura, K., Yao, M., Tanaka, I., Yoshida, Y., Ueda, T., Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1IYZ
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CRYSTAL STRUCTURES OF THE QUINONE OXIDOREDUCTASE FROM THERMUS THERMOPHILUS HB8 AND ITS COMPLEX WITH NADPH
Descriptor:QUINONE OXIDOREDUCTASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
J.Bacteriol., 185, 2003
1IZ0
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CRYSTAL STRUCTURES OF THE QUINONE OXIDOREDUCTASE FROM THERMUS THERMOPHILUS HB8 AND ITS COMPLEX WITH NADPH
Descriptor:QUINONE OXIDOREDUCTASE, SULFATE ION
Authors:Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-17
Release date:2003-07-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH: Implication for NADPH and Substrate Recognition
J.Bacteriol., 185, 2003
1IYB
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CRYSTAL STRUCTURE OF THE NICOTIANA GLUTINOSA RIBONUCLEASE NW
Descriptor:Ribonuclease, GUANOSINE-5'-MONOPHOSPHATE
Authors:Kawano, S., Kakuta, Y., Kimura, M.
Deposit date:2002-08-05
Release date:2003-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography
Biochemistry, 41, 2002
1V47
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CRYSTAL STRUCTURE OF ATP SULFURYLASE FROM THERMUS THERMOPHILLUS HB8 IN COMPLEX WITH APS
Descriptor:ATP sulfurylase, ZINC ION, CHLORIDE ION, ...
Authors:Taguchi, Y., Sugishima, M., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-11
Release date:2004-04-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of a novel zinc-binding ATP sulfurylase from Thermus thermophilus HB8
Biochemistry, 43, 2004
1UAX
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CRYSTAL STRUCTURE OF THE RIBONUCLEASE H2 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Ribonuclease HII
Authors:Hata, T., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2003-03-24
Release date:2004-06-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the ribonuclease H2 from Pyrococcus horikoshii OT3
To be published
1UAI
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CRYSTAL STRUCTURE OF THE ALGINATE LYASE FROM CORYNEBACTERIUM SP.
Descriptor:polyguluronate lyase
Authors:Kakuta, Y.
Deposit date:2003-03-11
Release date:2004-07-27
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of the alginate (poly alpha-l-guluronate) lyase from Corynebacterium sp. at 1.2 A resolution
J.Mol.Biol., 345, 2005
1V77
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CRYSTAL STRUCTURE OF THE PH1877 PROTEIN
Descriptor:hypothetical protein PH1877
Authors:Takagi, H., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2003-12-12
Release date:2004-08-31
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
1UAR
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CRYSTAL STRUCTURE OF RHODANESE FROM THERMUS THERMOPHILUS HB8
Descriptor:Rhodanese, GLYCEROL
Authors:Suzuki, Y., Kakuta, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-03-17
Release date:2004-09-21
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Rhodanese from Thermus thermophilus HB8
To be published
1V76
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CRYSTAL STRUCTURE OF ARCHAEAL RIBONUCLEASE P PROTEIN PH1771P FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:RNase P protein Ph1771p, SULFATE ION
Authors:Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2003-12-12
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29
Rna, 10, 2004
1V9H
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CRYSTAL STRUCTURE OF THE RNASE MC1 MUTANT Y101A IN COMPLEX WITH 5'-UMP
Descriptor:Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
Authors:Kimura, K., Numata, T., Kakuta, Y., Kimura, M.
Deposit date:2004-01-26
Release date:2004-10-05
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004