1NST | |
1I7H | | CRYSTAL STURCUTURE OF FDX | | Descriptor: | FERREDOXIN, FE2/S2 (INORGANIC) CLUSTER | | Authors: | Kakuta, Y., Horio, T., Takahashi, Y., Fukuyama, K. | | Deposit date: | 2001-03-09 | | Release date: | 2002-03-09 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
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2Z4T | | CRYSTAL STRUCTURE OF VIBRIONACEAE PHOTOBACTERIUM SP. JT-ISH-224 2,6-SIALYLTRANSFERASE IN A TERNARY COMPLEX WITH DONOR PRODUCT CMP AND ACCEPTER SUBSTRATE LACTOSE | | Descriptor: | Beta-galactoside alpha-2,6-sialyltransferase, ALPHA-LACTOSE, PHOSPHATE ION, ... | | Authors: | Kakuta, Y., Okino, N., Kajiwara, H., Ichikawa, M., Takakura, Y., Ito, M., Yamamoto, T. | | Deposit date: | 2007-06-25 | | Release date: | 2008-04-08 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of Vibrionaceae Photobacterium sp. JT-ISH-224 alpha2,6-sialyltransferase in a ternary complex with donor product CMP and acceptor substrate lactose: catalytic mechanism and substrate recognition
Glycobiology, 18, 2008
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3AY8 | | GLUTATHIONE S-TRANSFERASE UNCLASSIFIED 2 FROM BOMBYX MORI | | Descriptor: | Glutathione S-transferase, GLYCEROL | | Authors: | Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y., Yamamoto, K. | | Deposit date: | 2011-05-02 | | Release date: | 2011-09-07 | | Last modified: | 2013-06-19 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori
Biochim.Biophys.Acta, 1810, 2011
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1AQU | |
1AQY | | ESTROGEN SULFOTRANSFERASE WITH PAP | | Descriptor: | ESTROGEN SULFOTRANSFERASE, ADENOSINE-3'-5'-DIPHOSPHATE | | Authors: | Kakuta, Y., Pedersen, L.G., Carter, C.W., Negishi, M., Pedersen, L.C. | | Deposit date: | 1997-08-04 | | Release date: | 1998-10-28 | | Last modified: | 2017-08-09 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Crystal structure of estrogen sulphotransferase.
Nat.Struct.Biol., 4, 1997
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1BO6 | |
1VB5 | |
1X0T | | CRYSTAL STRUCTURE OF RIBONUCLEASE P PROTEIN PH1601P FROM PYROCOCCUS HORIKOSHII OT3 | | Descriptor: | Ribonuclease P protein component 4, ZINC ION | | Authors: | Kakuta, Y., Ishimatsu, I., Numata, T., Kimura, K., Yao, M., Tanaka, I., Kimura, M. | | Deposit date: | 2005-03-29 | | Release date: | 2005-11-15 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
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1X0U | |
2E9L | | CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE (KLOTHO-RELATED PROTE:KLRP) COMPLEX WITH GLUCOSE AND FATTY ACIDS | | Descriptor: | Cytosolic beta-glucosidase, BETA-D-GLUCOSE, PALMITIC ACID, ... | | Authors: | Kakuta, Y., Hayashi, Y., Okino, N., Ito, M. | | Deposit date: | 2007-01-25 | | Release date: | 2007-09-11 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase.
J.Biol.Chem., 282, 2007
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2E9M | | CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NEUTRAL BETA-GLYCOSYLCERAMIDASE (KLOTHO-RELATED PROTE:KLRP) COMPLEX WITH GALACTOSE AND FATTY ACIDS | | Descriptor: | Cytosolic beta-glucosidase, BETA-D-GALACTOSE, PALMITIC ACID, ... | | Authors: | Kakuta, Y., Hayashi, Y., Okino, N., Ito, M. | | Deposit date: | 2007-01-25 | | Release date: | 2007-09-11 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase.
J.Biol.Chem., 282, 2007
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2ZSC | | TAMAVIDIN2, NOVEL AVIDIN-LIKE BIOTIN-BINDING PROTEINS FROM AN EDIBLE MUSHROOM | | Descriptor: | Tamavidin2, GLYCEROL, BIOTIN, ... | | Authors: | Kakuta, Y., Okino, N., Ito, M., Yamamoto, T., Takakura, Y. | | Deposit date: | 2008-09-05 | | Release date: | 2009-02-17 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.3 Å) | | Cite: | Tamavidins--novel avidin-like biotin-binding proteins from the Tamogitake mushroom
Febs J., 276, 2009
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1UAI | |
2ZWS | | CRYSTAL STRUCTURE ANALYSIS OF NEUTRAL CERAMIDASE FROM PSEUDOMONAS AERUGINOSA | | Descriptor: | Neutral ceramidase, ZINC ION, MAGNESIUM ION, ... | | Authors: | Kakuta, Y., Okino, N., Inoue, T., Okano, H., Ito, M. | | Deposit date: | 2008-12-17 | | Release date: | 2009-03-03 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase.
J.Biol.Chem., 284, 2009
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3VK9 | | CRYSTAL STRUCTURE OF DELTA-CLASS GLUTATHIONE TRANSFERASE FROM SILKMOTH | | Descriptor: | Glutathione S-transferase delta, GLYCEROL | | Authors: | Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K. | | Deposit date: | 2011-11-10 | | Release date: | 2012-10-03 | | Method: | X-RAY DIFFRACTION (2.001 Å) | | Cite: | Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
Biochim.Biophys.Acta, 1820, 2012
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3AMK | | STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L | | Descriptor: | Os06g0726400 protein, PHOSPHATE ION, GLYCEROL | | Authors: | Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M. | | Deposit date: | 2010-08-20 | | Release date: | 2011-09-28 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
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3AML | | STRUCTURE OF THE STARCH BRANCHING ENZYME I (BEI) FROM ORYZA SATIVA L | | Descriptor: | Os06g0726400 protein, BETA-MERCAPTOETHANOL, GLYCEROL, ... | | Authors: | Kakuta, Y., Chaen, K., Noguchi, J., Vu, N., Kimura, M. | | Deposit date: | 2010-08-20 | | Release date: | 2011-09-28 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
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1IRM | | CRYSTAL STRUCTURE OF APO HEME OXYGENASE-1 | | Descriptor: | apo heme oxygenase-1 | | Authors: | Sugishima, M., Sakamoto, H., Kakuta, Y., Omata, Y., Hayashi, S., Noguchi, M., Fukuyama, K. | | Deposit date: | 2001-10-09 | | Release date: | 2002-07-10 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.55 Å) | | Cite: | Crystal structure of rat apo-heme oxygenase-1 (HO-1): mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms
Biochemistry, 41, 2002
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3VSM | | THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN | | Descriptor: | Occlusion-derived virus envelope protein E66, GLYCEROL | | Authors: | Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y. | | Deposit date: | 2012-04-27 | | Release date: | 2013-05-22 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
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3VSN | | THE CRYSTAL STRUCTURE OF NOVEL CHONDROITION LYASE ODV-E66, BACULOVIRUS ENVELOPE PROTEIN | | Descriptor: | Occlusion-derived virus envelope protein E66, IODIDE ION, GLYCEROL | | Authors: | Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M., Kakuta, Y. | | Deposit date: | 2012-04-27 | | Release date: | 2013-05-22 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein
To be Published
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1IR6 | | CRYSTAL STRUCTURE OF EXONUCLEASE RECJ BOUND TO MANGANESE | | Descriptor: | exonuclease RecJ, MANGANESE (II) ION | | Authors: | Yamagata, A., Kakuta, Y., Masui, R., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2001-09-11 | | Release date: | 2002-05-15 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
Proc.Natl.Acad.Sci.USA, 99, 2002
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3AP1 | | CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP AND C4 PEPTIDE | | Descriptor: | Protein-tyrosine sulfotransferase 2, C4 peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ... | | Authors: | Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y. | | Deposit date: | 2010-10-09 | | Release date: | 2011-10-26 | | Last modified: | 2013-03-27 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
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3AP2 | | CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP,C4 PEPTIDE, AND PHOSPHATE ION | | Descriptor: | Protein-tyrosine sulfotransferase 2, C4 peptide, ADENOSINE-3'-5'-DIPHOSPHATE, ... | | Authors: | Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y. | | Deposit date: | 2010-10-09 | | Release date: | 2011-10-26 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Crystal structure of human tyrosylprotein sulfotransferase-2: Insights into substrate-binding and catalysis of post-translational protein tyrosine sulfation
To be Published
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3AP3 | | CRYSTAL STRUCTURE OF HUMAN TYROSYLPROTEIN SULFOTRANSFERASE-2 COMPLEXED WITH PAP | | Descriptor: | Protein-tyrosine sulfotransferase 2, ADENOSINE-3'-5'-DIPHOSPHATE | | Authors: | Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M.-C., Sakakibara, Y., Suiko, M., Kimura, M., Kakuta, Y. | | Deposit date: | 2010-10-09 | | Release date: | 2011-10-26 | | Last modified: | 2013-03-27 | | Method: | X-RAY DIFFRACTION (3.5 Å) | | Cite: | Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction.
Nat Commun, 4, 2013
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