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1FIY
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BU of 1fiy by Molmil
THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION
Descriptor: ASPARTIC ACID, PHOSPHOENOLPYRUVATE CARBOXYLASE
Authors:Kai, Y, Matsumura, H, Inoue, T, Terada, K, Nagara, Y, Yoshinaga, T, Kihara, A, Izui, K.
Deposit date:1998-05-02
Release date:1999-02-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Three-dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for allosteric inhibition.
Proc.Natl.Acad.Sci.USA, 96, 1999
1C7K
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CRYSTAL STRUCTURE OF THE ZINC PROTEASE
Descriptor: CALCIUM ION, ZINC ENDOPROTEASE, ZINC ION
Authors:Kurisu, G, Harada, S, Kai, Y.
Deposit date:2000-02-19
Release date:2001-04-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structure of the zinc-binding site in the crystal structure of a zinc endoprotease from Streptomyces caespitosus at 1 A resolution.
J.Inorg.Biochem., 82, 2000
1BQR
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REDUCED PSEUDOAZURIN
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Inoue, T, Nishio, N, Hamanaka, S, Shimomura, T, Harada, S, Suzuki, S, Kohzuma, T, Shidara, S, Iwasaki, H, Kai, Y.
Deposit date:1998-08-17
Release date:1999-08-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1BQK
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OXIDIZED PSEUDOAZURIN
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Inoue, T, Nishio, N, Hamanaka, S, Shimomura, T, Harada, S, Suzuki, S, Kohzuma, T, Shidara, S, Iwasaki, H, Kai, Y.
Deposit date:1998-08-17
Release date:1999-08-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1BYO
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WILD-TYPE PLASTOCYANIN FROM SILENE
Descriptor: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
Authors:Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
Deposit date:1998-10-19
Release date:1999-10-15
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
1BXV
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BU of 1bxv by Molmil
REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Inoue, T, Sugawara, H, Hamanaka, S, Tsukui, H, Suzuki, E, Kohzuma, T, Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
1BYP
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BU of 1byp by Molmil
E43K,D44K DOUBLE MUTANT PLASTOCYANIN FROM SILENE
Descriptor: COPPER (II) ION, PROTEIN (PLASTOCYANIN)
Authors:Sugawara, H, Inoue, T, Li, C, Gotowda, M, Hibino, T, Takabe, T, Kai, Y.
Deposit date:1998-10-19
Release date:1999-10-19
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
2KSV
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BU of 2ksv by Molmil
The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum
Descriptor: Protein-glutaminase
Authors:Kumeta, H, Miwa, N, Ogura, K, Kai, Y, Mizukoshi, T, Shimba, N, Suzuki, E, Inagaki, F.
Deposit date:2010-01-14
Release date:2010-02-16
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.
J.Biomol.Nmr, 46, 2010
1PMY
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BU of 1pmy by Molmil
REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION
Descriptor: COPPER (II) ION, PSEUDOAZURIN
Authors:Inoue, T, Kai, Y, Harada, S, Kasai, N, Ohshiro, Y, Suzuki, S, Kohzuma, T, Tobari, J.
Deposit date:1994-01-28
Release date:1994-07-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Refined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution.
Acta Crystallogr.,Sect.D, 50, 1994
1QB4
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BU of 1qb4 by Molmil
CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE
Descriptor: ASPARTIC ACID, MANGANESE (II) ION, PHOSPHOENOLPYRUVATE CARBOXYLASE
Authors:Matsumura, H, Terada, M, Shirakata, S, Inoue, T, Yoshinaga, T, Izui, K, Kai, Y.
Deposit date:1999-04-30
Release date:2002-05-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli
FEBS Lett., 458, 1999
1RKR
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BU of 1rkr by Molmil
CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
Descriptor: AZURIN-I, COPPER (II) ION
Authors:Li, C, Inoue, T, Gotowda, M, Suzuki, S, Yamaguchi, K, Kataoka, K, Kai, Y.
Deposit date:1997-05-17
Release date:1998-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
1BWV
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BU of 1bwv by Molmil
Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
Authors:Sugawara, H, Yamamoto, H, Shibata, N, Inoue, T, Miyake, C, Yokota, A, Kai, Y.
Deposit date:1998-09-29
Release date:1999-09-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of carboxylase reaction-oriented ribulose 1, 5-bisphosphate carboxylase/oxygenase from a thermophilic red alga, Galdieria partita.
J.Biol.Chem., 274, 1999
1JQO
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BU of 1jqo by Molmil
Crystal structure of C4-form phosphoenolpyruvate carboxylase from maize
Descriptor: SULFATE ION, phosphoenolpyruvate carboxylase
Authors:Matsumura, H, Kai, Y.
Deposit date:2001-08-07
Release date:2003-01-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1JQN
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Crystal structure of E.coli phosphoenolpyruvate carboxylase in complex with Mn2+ and DCDP
Descriptor: 3,3-DICHLORO-2-PHOSPHONOMETHYL-ACRYLIC ACID, ASPARTIC ACID, MANGANESE (II) ION, ...
Authors:Matsumura, H, Kai, Y.
Deposit date:2001-08-07
Release date:2003-01-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1BXU
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BU of 1bxu by Molmil
OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Inoue, T, Sugawara, H, Hamanaka, S, Tsukui, H, Suzuki, E, Kohzuma, T, Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
1CUO
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BU of 1cuo by Molmil
CRYSTAL STRUCTURE ANALYSIS OF ISOMER-2 AZURIN FROM METHYLOMONAS J
Descriptor: COPPER (II) ION, PROTEIN (AZURIN ISO-2)
Authors:Inoue, T, Nishio, N, Kai, Y, Suzuki, S, Kataoka, K.
Deposit date:1999-08-21
Release date:2000-08-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J.
J.Mol.Biol., 333, 2003
1UAT
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BU of 1uat by Molmil
The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
Descriptor: Azurin iso-2, COPPER (II) ION, SULFATE ION
Authors:Inoue, T, Suzuki, S, Nisho, N, Yamaguchi, K, Kataoka, K, Tobari, J, Yong, X, Hamanaka, S, Matsumura, H, Kai, Y.
Deposit date:2003-03-19
Release date:2004-03-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
J.Mol.Biol., 333, 2003
1V40
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First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase
Descriptor: 3-(1,3-BENZOTHIAZOL-2-YL)-2-(1,4-DIOXO-1,2,3,4-TETRAHYDROPHTHALAZIN-6-YL)-5-[(E)-2-PHENYLVINYL]-3H-TETRAAZOL-2-IUM, GLUTATHIONE, GLYCEROL, ...
Authors:Inoue, T, Okano, Y, Kado, Y, Aritake, K, Irikura, D, Uodome, N, Kinugasa, S, Okazaki, N, Matsumura, H, Kai, Y, Urade, Y.
Deposit date:2003-11-07
Release date:2004-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.
J.Biochem.(Tokyo), 135, 2004
1KDI
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BU of 1kdi by Molmil
REDUCED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Inoue, T, Gotowda, M, Hamada, K, Kohzuma, T, Yoshizaki, F, Sugimura, Y, Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
1KDJ
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OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Inoue, T, Gotowda, M, Hamada, K, Kohzuma, T, Yoshizaki, F, Sugimura, Y, Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
1IWA
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RUBISCO FROM GALDIERIA PARTITA
Descriptor: SULFATE ION, ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
Authors:Okano, Y, Mizohata, E, Xie, Y, Matsumura, H, Sugawara, H, Inoue, T, Yokota, A, Kai, Y.
Deposit date:2002-04-30
Release date:2003-04-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site
FEBS LETT., 527, 2002
1WS8
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Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
Descriptor: COPPER (II) ION, GLYCEROL, mavicyanin
Authors:Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kunishige, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS7
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Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
Descriptor: COPPER (I) ION, Mavicyanin
Authors:Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kataoka, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2018-07-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1IR2
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Crystal Structure of Activated Ribulose-1,5-bisphosphate Carboxylase/oxygenase (Rubisco) from Green alga, Chlamydomonas reinhardtii Complexed with 2-Carboxyarabinitol-1,5-bisphosphate (2-CABP)
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, GLYCEROL, Large subunit of Rubisco, ...
Authors:Mizohata, E, Matsumura, H, Okano, Y, Kumei, M, Takuma, H, Onodera, J, Kato, K, Shibata, N, Inoue, T, Yokota, A, Kai, Y.
Deposit date:2001-09-03
Release date:2002-03-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
1IR1
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Crystal Structure of Spinach Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) Complexed with CO2, Mg2+ and 2-Carboxyarabinitol-1,5-Bisphosphate
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, Large subunit of Rubisco, MAGNESIUM ION, ...
Authors:Mizohata, E, Matsumura, H, Okano, Y, Kumei, M, Takuma, H, Onodera, J, Kato, K, Shibata, N, Inoue, T, Yokota, A, Kai, Y.
Deposit date:2001-08-31
Release date:2002-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002

 

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