Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1D31
DownloadVisualize
BU of 1d31 by Molmil
THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS
Descriptor: DNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Joshua-Tor, L, Frolow, F, Appella, E, Hope, H, Rabinovich, D, Sussman, J.L.
Deposit date:1991-04-25
Release date:1992-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Three-dimensional structures of bulge-containing DNA fragments.
J.Mol.Biol., 225, 1992
1GCB
DownloadVisualize
BU of 1gcb by Molmil
GAL6, YEAST BLEOMYCIN HYDROLASE DNA-BINDING PROTEASE (THIOL)
Descriptor: GAL6 HG (EMTS) DERIVATIVE, GLYCEROL, MERCURY (II) ION, ...
Authors:Joshua-Tor, L, Xu, H.E, Johnston, S.A, Rees, D.C.
Deposit date:1995-07-18
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a conserved protease that binds DNA: the bleomycin hydrolase, Gal6.
Science, 269, 1995
1A6R
DownloadVisualize
BU of 1a6r by Molmil
GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A
Descriptor: GAL6, SULFATE ION
Authors:Joshua-Tor, L, Zheng, W, Johnston, S.A.
Deposit date:1998-02-27
Release date:1998-10-21
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The unusual active site of Gal6/bleomycin hydrolase can act as a carboxypeptidase, aminopeptidase, and peptide ligase.
Cell(Cambridge,Mass.), 93, 1998
3GCB
DownloadVisualize
BU of 3gcb by Molmil
GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A/DELTAK454
Descriptor: GAL6, GLYCEROL, SULFATE ION
Authors:Joshua-Tor, L, Zheng, W, Johnston, S.A.
Deposit date:1998-02-27
Release date:1998-10-21
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:The unusual active site of Gal6/bleomycin hydrolase can act as a carboxypeptidase, aminopeptidase, and peptide ligase.
Cell(Cambridge,Mass.), 93, 1998
4X4T
DownloadVisualize
BU of 4x4t by Molmil
Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCACCA
Descriptor: CCA-adding enzyme, DI(HYDROXYETHYL)ETHER, G70A tRNA minihelix ending in CCACCA, ...
Authors:Kuhn, C.-D, Joshua-Tor, L.
Deposit date:2014-12-03
Release date:2015-02-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell, 160, 2015
4X4Q
DownloadVisualize
BU of 4x4q by Molmil
Crystal structure of the A.fulgidus CCA-adding enzyme in complex with a G70A arginyl-tRNA minihelix ending in CCAC and CTP
Descriptor: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Kuhn, C.-D, Joshua-Tor, L.
Deposit date:2014-12-03
Release date:2015-02-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:On-Enzyme Refolding Permits Small RNA and tRNA Surveillance by the CCA-Adding Enzyme.
Cell, 160, 2015
1CAD
DownloadVisualize
BU of 1cad by Molmil
X-RAY CRYSTAL STRUCTURES OF THE OXIDIZED AND REDUCED FORMS OF THE RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
Descriptor: FE (III) ION, RUBREDOXIN
Authors:Day, M.W, Hsu, B.T, Joshua-Tor, L, Park, J.B, Zhou, Z.H, Adams, M.W.W, Rees, D.C.
Deposit date:1992-05-18
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus.
Protein Sci., 1, 1992
1CAA
DownloadVisualize
BU of 1caa by Molmil
X-RAY CRYSTAL STRUCTURES OF THE OXIDIZED AND REDUCED FORMS OF THE RUBREDOXIN FROM THE MARINE HYPERTHERMOPHILIC ARCHAEBACTERIUM PYROCOCCUS FURIOSUS
Descriptor: FE (III) ION, RUBREDOXIN
Authors:Day, M.W, Hsu, B.T, Joshua-Tor, L, Park, J.B, Zhou, Z.H, Adams, M.W.W, Rees, D.C.
Deposit date:1992-05-18
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus.
Protein Sci., 1, 1992
1CB5
DownloadVisualize
BU of 1cb5 by Molmil
HUMAN BLEOMYCIN HYDROLASE.
Descriptor: BLEOMYCIN HYDROLASE
Authors:O'Farrell, P.A, Gonzalez, F, Zheng, W, Johnston, S.A, Joshua-Tor, L.
Deposit date:1999-03-01
Release date:2000-03-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of human bleomycin hydrolase, a self-compartmentalizing cysteine protease.
Structure Fold.Des., 7, 1999
6X46
DownloadVisualize
BU of 6x46 by Molmil
NMR solution structure of Asterix/Gtsf1 from mouse (CHHC zinc finger domains)
Descriptor: Gametocyte-specific factor 1, ZINC ION
Authors:Ipsaro, J.J, O'Brien, P.A, Bhattacharya, S, Palmer III, A.G, Joshua-Tor, L.
Deposit date:2020-05-22
Release date:2021-03-03
Last modified:2021-04-14
Method:SOLUTION NMR
Cite:Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons.
Cell Rep, 34, 2021
6OTF
DownloadVisualize
BU of 6otf by Molmil
Symmetric reconstruction of human norovirus GII.2 Snow Mountain Virus Strain VLP in T=3 symmetry
Descriptor: Viral protein 1, ZINC ION
Authors:Jung, J, Grant, T, Thomas, D.R, Diehnelt, C.W, Grigorieff, N, Joshua-Tor, L.
Deposit date:2019-05-03
Release date:2019-06-26
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:High-resolution cryo-EM structures of outbreak strain human norovirus shells reveal size variations.
Proc.Natl.Acad.Sci.USA, 116, 2019
7UX9
DownloadVisualize
BU of 7ux9 by Molmil
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Descriptor: ATP-dependent DNA helicase DDM1, DNA (antisense strand), DNA (sense strand), ...
Authors:Ipsaro, J.J, Adams, D.W, Joshua-Tor, L.
Deposit date:2022-05-05
Release date:2023-08-09
Last modified:2023-09-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Chromatin remodeling of histone H3 variants by DDM1 underlies epigenetic inheritance of DNA methylation.
Cell, 186, 2023
1U04
DownloadVisualize
BU of 1u04 by Molmil
Crystal structure of full length Argonaute from Pyrococcus furiosus
Descriptor: hypothetical protein PF0537
Authors:Song, J.J, Smith, S.K, Hannon, G.J, Joshua-Tor, L.
Deposit date:2004-07-12
Release date:2004-08-17
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Argonaute and Its Implications for RISC Slicer Activity
Science, 305, 2004
2GXA
DownloadVisualize
BU of 2gxa by Molmil
Crystal structure of papillomavirus E1 hexameric helicase with ssDNA and MgADP
Descriptor: 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3', ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
Authors:Enemark, E.J, Joshua-Tor, L.
Deposit date:2006-05-08
Release date:2006-07-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Mechanism of DNA translocation in a replicative hexameric helicase.
Nature, 442, 2006
8E2A
DownloadVisualize
BU of 8e2a by Molmil
Human Dis3L2 in complex with hairpin D-U7
Descriptor: DIS3-like exonuclease 2, RNA hairpin D-U7
Authors:Meze, K, Thomas, D.R, Joshua-Tor, L.
Deposit date:2022-08-14
Release date:2023-03-01
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:A shape-shifting nuclease unravels structured RNA.
Nat.Struct.Mol.Biol., 30, 2023
8E28
DownloadVisualize
BU of 8e28 by Molmil
Human Dis3L2 in complex with hairpin A-GCU14
Descriptor: DIS3-like exonuclease 2, RNA hairpin A-GCU14
Authors:Meze, K, Thomas, D.R, Joshua-Tor, L.
Deposit date:2022-08-14
Release date:2023-03-01
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A shape-shifting nuclease unravels structured RNA.
Nat.Struct.Mol.Biol., 30, 2023
8E29
DownloadVisualize
BU of 8e29 by Molmil
Human Dis3L2 in complex with hairpin C-U12
Descriptor: DIS3-like exonuclease 2, RNA hairpin C-U12
Authors:Meze, K, Thomas, D.R, Joshua-Tor, L.
Deposit date:2022-08-14
Release date:2023-03-01
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A shape-shifting nuclease unravels structured RNA.
Nat.Struct.Mol.Biol., 30, 2023
8E27
DownloadVisualize
BU of 8e27 by Molmil
RNA-free Human Dis3L2
Descriptor: DIS3-like exonuclease 2
Authors:Meze, K, Thomas, D.R, Joshua-Tor, L.
Deposit date:2022-08-14
Release date:2023-03-01
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:A shape-shifting nuclease unravels structured RNA.
Nat.Struct.Mol.Biol., 30, 2023
1R6Z
DownloadVisualize
BU of 1r6z by Molmil
The Crystal Structure of the Argonaute2 PAZ domain (as a MBP fusion)
Descriptor: Chimera of Maltose-binding periplasmic protein and Argonaute 2, NICKEL (II) ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Song, J.J, Liu, J, Tolia, N.H, Schneiderman, J, Smith, S.K, Martienssen, R.A, Hannon, G.J, Joshua-Tor, L.
Deposit date:2003-10-17
Release date:2004-01-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes.
Nat.Struct.Biol., 10, 2003
1R9W
DownloadVisualize
BU of 1r9w by Molmil
Crystal Structure of the DNA-binding domain of the human papillomavirus type 18 (HPV-18) replication initiation protein E1
Descriptor: Replication protein E1
Authors:Auster, A.S, Joshua-Tor, L.
Deposit date:2003-10-31
Release date:2003-11-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The DNA-binding domain of human papillomavirus type 18 E1. Crystal structure, dimerization, and DNA binding.
J.Biol.Chem., 279, 2004
3G7L
DownloadVisualize
BU of 3g7l by Molmil
Chromodomain of Chp1 in complex with Histone H3K9me3 peptide
Descriptor: ACETIC ACID, Chromo domain-containing protein 1, Histone H3.1/H3.2, ...
Authors:Schalch, T, Joshua-Tor, L.
Deposit date:2009-02-10
Release date:2009-04-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-affinity binding of Chp1 chromodomain to K9 methylated histone H3 is required to establish centromeric heterochromatin
Mol.Cell, 34, 2009
3TIX
DownloadVisualize
BU of 3tix by Molmil
Crystal structure of the Chp1-Tas3 complex core
Descriptor: CHLORIDE ION, Chromo domain-containing protein 1, POTASSIUM ION, ...
Authors:Schalch, T, Joshua-Tor, L.
Deposit date:2011-08-22
Release date:2011-11-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9001 Å)
Cite:The Chp1-Tas3 core is a multifunctional platform critical for gene silencing by RITS.
Nat.Struct.Mol.Biol., 18, 2011
3V2U
DownloadVisualize
BU of 3v2u by Molmil
Crystal structure of the yeast GAL regulon complex of the repressor, Gal80p, and the transducer, Gal3p, with galactose and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, Galactose/lactose metabolism regulatory protein GAL80, ...
Authors:Lavy, T, Kumar, P.R, He, H, Joshua-Tor, L.
Deposit date:2011-12-12
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:The Gal3p transducer of the GAL regulon interacts with the Gal80p repressor in its ligand-induced closed conformation.
Genes Dev., 26, 2012
3V5R
DownloadVisualize
BU of 3v5r by Molmil
Crystal structure of the unliganded form of Gal3p
Descriptor: Protein GAL3, SULFATE ION
Authors:Lavy, T, Kumar, P.R, He, H, Joshua-Tor, L.
Deposit date:2011-12-16
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:The Gal3p transducer of the GAL regulon interacts with the Gal80p repressor in its ligand-induced closed conformation.
Genes Dev., 26, 2012
3BTV
DownloadVisualize
BU of 3btv by Molmil
Crystal structure of the super-repressor mutant of Gal80p from Saccharomyces cerevisiae; Gal80(S0)-[G301R]
Descriptor: Galactose/lactose metabolism regulatory protein GAL80
Authors:Kumar, P.R, Joshua-Tor, L.
Deposit date:2007-12-31
Release date:2008-03-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:NADP regulates the yeast GAL induction system.
Science, 319, 2008

 

1234>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon