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1B6X
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BU of 1b6x by Molmil
3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE GUANINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS, 4 STRUCTURES
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3'
Authors:Cullinan, D, Johnson, F, Grollman, A.P, Eisenberg, M, De Los Santos, C.
Deposit date:1999-01-19
Release date:1999-01-27
Last modified:2012-01-18
Method:SOLUTION NMR
Cite:Solution structure of a DNA duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyguanosine.
Biochemistry, 36, 1997
1B60
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BU of 1b60 by Molmil
3,N4-ETHENO-2'-DEOXYCYTIDINE OPPOSITE CYTIDINE IN AN 11-MER DUPLEX, SOLUTION STRUCTURE FROM NMR AND MOLECULAR DYNAMICS
Descriptor: DNA (5'-D(*CP*GP*TP*AP*CP*(EDC)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3')
Authors:Cullinan, D, Johnson, F, De Los Santos, C.
Deposit date:1999-01-20
Release date:2000-02-18
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of an 11-mer duplex containing the 3, N(4)-ethenocytosine adduct opposite 2'-deoxycytidine: implications for the recognition of exocyclic lesions by DNA glycosylases.
J.Mol.Biol., 296, 2000
1EXL
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BU of 1exl by Molmil
STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING THE CARBOCYCLIC NUCLEOTIDE ANALOG: 2'-DEOXYARISTEROMYCIN
Descriptor: DNA (5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*CP*TP*CP*AP*CP*TP*G)-3')
Authors:Smirnov, S, Johnson, F, Marumoto, R, de los Santos, C.
Deposit date:2000-05-03
Release date:2000-05-15
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure of an 11-mer DNA duplex containing the carbocyclic nucleotide analog: 2'-deoxyaristeromycin
J.Biomol.Struct.Dyn., 17, 2000
1FJB
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BU of 1fjb by Molmil
NMR Study of an 11-Mer DNA Duplex Containing 7,8-Dihydro-8-Oxoadenine (AOXO) Opposite Thymine
Descriptor: DNA (5'-D(*CP*GP*TP*AP*CP*(A38)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3')
Authors:Chen, H, Johnson, F, Grollman, A.P, Patel, D.J.
Deposit date:1995-12-15
Release date:1996-06-10
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural Studies of the Ionizing Radiation Adduct 7,8-Dihydro-8-Oxoadenine (A Oxo) Positioned Opposite Thymine and Guanine in DNA Duplexes
MAGN.RESON.CHEM., 34, 1996
1FYI
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BU of 1fyi by Molmil
11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR;
Descriptor: 5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3', 5'-D(*GP*TP*GP*AP*CP*(8OG)P*CP*AP*CP*TP*G)-3'
Authors:Smirnov, S, Johnson, F, de los Santos, C.
Deposit date:2000-09-30
Release date:2000-10-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Structural NMR characterization of an 11-mer DNA Duplex Containing a 2'-deoxyaristeromycin 8-oxo-Guanine pair, nonhydrolyzable substrate analog for the DNA repair enzyme MutY
To be Published
2LWO
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BU of 2lwo by Molmil
Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion
Descriptor: DNA (5'-D(*G*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3')
Authors:Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F.
Deposit date:2012-08-03
Release date:2013-02-20
Method:SOLUTION NMR
Cite:Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion
Chem.Res.Toxicol., 25, 2012
2LWN
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BU of 2lwn by Molmil
Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion
Descriptor: DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3')
Authors:Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F.
Deposit date:2012-08-03
Release date:2013-02-20
Method:SOLUTION NMR
Cite:Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion
Chem.Res.Toxicol., 25, 2012
2LWM
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BU of 2lwm by Molmil
Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion
Descriptor: DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3')
Authors:Zalianyak, T, de los Santos, C, Lukin, M, Attaluri, S, Johnson, F.
Deposit date:2012-08-03
Release date:2013-02-20
Method:SOLUTION NMR
Cite:Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion
Chem.Res.Toxicol., 25, 2012
2K1Y
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BU of 2k1y by Molmil
Solution Structure of Duplex DNA Containing the Mutagenic Lesion: 1,N2-Etheno-2'-deoxyguanine
Descriptor: 5'-D(*DCP*DGP*DTP*DAP*DCP*(GNE)P*DCP*DAP*DTP*DGP*DC)-3', 5'-D(*DGP*DCP*DAP*DTP*DGP*DCP*DGP*DTP*DAP*DCP*DG)-3'
Authors:Zaliznyak, T, Lukin, M, Johnson, F, de los Santos, C.
Deposit date:2008-03-18
Release date:2009-02-03
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of duplex DNA containing the mutagenic lesion 1,N(2)-etheno-2'-deoxyguanine.
Biochemistry, 47, 2008
2KDA
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BU of 2kda by Molmil
Solution Structure of DNA Containing Alpha-OH-PdG: the Mutagenic Adduct Produced by Acrolein
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, Zaliznyak, T, Johnson, F, Bonala, R, Attaluri, S.
Deposit date:2009-01-05
Release date:2009-04-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of DNA containing alpha-OH-PdG: the mutagenic adduct produced by acrolein.
Nucleic Acids Res., 37, 2009
2KD9
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BU of 2kd9 by Molmil
Solution Structure of DNA Containing Alpha-OH-PdG: the Mutagenic Adduct Produced by Acrolein
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(63G)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, Zaliznyak, T, Johnson, F, Bonala, R, Attaluri, S.
Deposit date:2009-01-05
Release date:2009-04-21
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of DNA containing alpha-OH-PdG: the mutagenic adduct produced by acrolein.
Nucleic Acids Res., 37, 2009
2LSZ
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BU of 2lsz by Molmil
NMR structure of duplex DNA containing the alpha-OH-PdG dA base pair: A mutagenic intermediate of acrolein
Descriptor: DNA (5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3')
Authors:Zaliznyak, T, de los Santos, C, Lukin, M, El-khateeb, M, Bonala, R, Johnson, F.
Deposit date:2012-05-09
Release date:2012-06-13
Method:SOLUTION NMR
Cite:NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein.
Biopolymers, 93, 2010
2LT0
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BU of 2lt0 by Molmil
NMR structure of duplex DNA containing the beta-OH-PdG dA base pair: A mutagenic intermediate of acrolein
Descriptor: DNA (5'-D(*CP*GP*TP*AP*CP*(63G)P*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3')
Authors:Zaliznyak, T, de los Santos, C, Lukin, M, El-khateeb, M, Bonala, R, Johnson, F.
Deposit date:2012-05-09
Release date:2012-06-13
Method:SOLUTION NMR
Cite:NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein.
Biopolymers, 93, 2010
2LGM
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BU of 2lgm by Molmil
Structure of DNA Containing an Aristolactam II-dA Lesion
Descriptor: DNA (5'-D(*CP*GP*TP*AP*CP*AP*CP*AP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3'), [1,3]benzodioxolo[6,5,4-cd]benzo[f]indol-5(6H)-one
Authors:Lukin, M, Zaliznyak, T, Johnson, F, de los Santos, C.
Deposit date:2011-07-28
Release date:2011-11-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and stability of DNA containing an aristolactam II-dA lesion: implications for the NER recognition of bulky adducts.
Nucleic Acids Res., 40, 2012
1XCZ
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BU of 1xcz by Molmil
Structure of DNA containing the beta-anomer of a carbocyclic abasic site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F.
Deposit date:2004-09-03
Release date:2004-10-19
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Impact of the C1 configuration of abasic sites on DNA duplex structure
Biochemistry, 43, 2004
1XCY
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BU of 1xcy by Molmil
Structure of DNA containing the alpha-anomer of a carbocyclic abasic site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*(DXD)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, El-khateeb, M, Rege, P, Tian, K, Johnson, F.
Deposit date:2004-09-03
Release date:2004-10-19
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Impact of the C1 configuration of abasic sites on DNA duplex structure
Biochemistry, 43, 2004
2B35
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BU of 2b35 by Molmil
Crystal structure of Mycobacterium tuberculosis enoyl reductase (InhA) inhibited by triclosan
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE, TRICLOSAN
Authors:Sullivan, T.J, Truglio, J.J, Novichenok, P, Stratton, C, Zhang, X, Kaur, T, Johnson, F, Boyne, M.S, Amin, A.
Deposit date:2005-09-19
Release date:2006-03-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:High Affinity InhA Inhibitors with Activity against Drug-Resistant Strains of Mycobacterium tuberculosis
ACS Chem.Biol., 1, 2006
2B36
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BU of 2b36 by Molmil
Crystal structure of Mycobacterium tuberculosis enoyl reductase (InhA) inhibited by 5-pentyl-2-phenoxyphenol
Descriptor: 5-PENTYL-2-PHENOXYPHENOL, Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Sullivan, T.J, Truglio, J.J, Novichenok, P, Stratton, C, Zhang, X, Kaur, T, Johnson, F, Boyne, M.S, Amin, A.
Deposit date:2005-09-19
Release date:2006-03-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:High Affinity InhA Inhibitors with Activity against Drug-Resistant Strains of Mycobacterium tuberculosis
ACS Chem.Biol., 1, 2006
2B37
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BU of 2b37 by Molmil
Crystal structure of Mycobacterium tuberculosis enoyl reductase (InhA) inhibited by 5-octyl-2-phenoxyphenol
Descriptor: 5-OCTYL-2-PHENOXYPHENOL, Enoyl-[acyl-carrier-protein] reductase [NADH], NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Sullivan, T.J, Truglio, J.J, Novichenok, P, Stratton, C, Zhang, X, Kaur, T, Johnson, F, Boyne, M.S, Amin, A.
Deposit date:2005-09-19
Release date:2006-03-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:High Affinity InhA Inhibitors with Activity against Drug-Resistant Strains of Mycobacterium tuberculosis
ACS Chem.Biol., 1, 2006
4V8A
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BU of 4v8a by Molmil
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Bulkley, D, Johnson, F.A, Steitz, T.A.
Deposit date:2011-12-05
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The antibiotic thermorubin inhibits protein synthesis by binding to inter-subunit bridge b2a of the ribosome.
J.Mol.Biol., 416, 2012
7OV5
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BU of 7ov5 by Molmil
Structure of Human Serum Albumin in complex with Aristolochic Acid II at 1.9 A resolution
Descriptor: 1,2-ETHANEDIOL, 6-nitronaphtho[1,2-e][1,3]benzodioxole-5-carboxylic acid, MYRISTIC ACID, ...
Authors:Pomyalov, S, Sidorenko, V.S, Grollman, A.P, Shoham, G.
Deposit date:2021-06-14
Release date:2022-06-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and mechanistic insights for the binding of aristolochic acids and their active metabolites to human serum albumin
To Be Published
7OV1
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BU of 7ov1 by Molmil
Structure of Human Serum Albumin in complex with Myristic Acid
Descriptor: 1,2-ETHANEDIOL, MYRISTIC ACID, Serum albumin
Authors:Pomyalov, S, Sidorenko, V.S, Grollman, A.P, Shoham, G.
Deposit date:2021-06-14
Release date:2022-06-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and mechanistic insights for the binding of aristolochic acids and their active metabolites to human serum albumin
To be published
7OV6
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BU of 7ov6 by Molmil
Structure of Human Serum Albumin in complex with Aristolochic Acid I at 1.9 A resolution - Optimized
Descriptor: 1,2-ETHANEDIOL, 8-methoxy-6-nitro-naphtho[1,2-e][1,3]benzodioxole-5-carboxylic acid, MYRISTIC ACID, ...
Authors:Pomyalov, S, Sidorenko, V.S, Grollman, A.P, Shoham, G.
Deposit date:2021-06-14
Release date:2022-06-22
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and mechanistic insights for the binding of aristolochic acids and their active metabolites to human serum albumin
To Be Published
2GE2
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BU of 2ge2 by Molmil
Solution structure of the Duplex DNA Containing the 3-(Deoxyguanosin-N2-yl)-2-Acetoaminofluorene
Descriptor: 2-ACETYLAMINOFLUORENE-3-YL, 5'-D(*CP*GP*TP*AP*CP*GP*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'
Authors:de los Santos, C, Zaliznyak, T.
Deposit date:2006-03-17
Release date:2006-07-04
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structure and Stability of Duplex DNA Containing the 3-(Deoxyguanosin-N(2)-yl)-2-acetylaminofluorene (dG(N(2))-AAF) Lesion: A Bulky Adduct that Persists in Cellular DNA.
Chem.Res.Toxicol., 19, 2006

217705

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