Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6Z3O
DownloadVisualize
BU of 6z3o by Molmil
The E74Q mutant of Small Alarmone Hydrolase SAH from Pseudomonas aeruginosa PAO1
Descriptor: MANGANESE (II) ION, Small Alarmone Hydrolase
Authors:Jin, Y, Rizkallah, P, Bell, H.
Deposit date:2020-05-21
Release date:2021-01-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Apo Structure of a Small Alarmone Hydrolase from Pseudomonas aeruginosa PAO1
To Be Published
6Z3N
DownloadVisualize
BU of 6z3n by Molmil
Apo Structure of a Hydrolase from Pseudomonas aeruginosa PAO1
Descriptor: ACETATE ION, GLYCEROL, Hydrolase, ...
Authors:Jin, Y, Rizkallah, P, Bell, H.
Deposit date:2020-05-21
Release date:2021-06-09
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Apo Structure of a Small Alarmone Hydrolase from Pseudomonas aeruginosa PAO1
To Be Published
5HS2
DownloadVisualize
BU of 5hs2 by Molmil
Crystal structure of IspD complexed with CTP and Mg2+ from Bacillus subtilis at 1.90 Angstroms resolution
Descriptor: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Jin, Y, Liu, Z.C, Wang, G.G.
Deposit date:2016-01-24
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structural and functional study on the 2-C-methyl-d-erythritol-4-phosphate cytidyltransferase (IspD) from Bacillus subtilis.
Sci Rep, 6, 2016
5DDV
DownloadVisualize
BU of 5ddv by Molmil
Crystal structure of IspD from Bacillus subtilis at 2.30 Angstroms resolution, crystal form II
Descriptor: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Authors:Jin, Y, Liu, Z.C, Wang, G.G.
Deposit date:2015-08-25
Release date:2016-08-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A structural and functional study on the 2-C-methyl-d-erythritol-4-phosphate cytidyltransferase (IspD) from Bacillus subtilis.
Sci Rep, 6, 2016
7P1Y
DownloadVisualize
BU of 7p1y by Molmil
A small alarmone hydrolase TdActApo2 mutant - T78N
Descriptor: CHLORIDE ION, HD domain-containing protein, MANGANESE (II) ION
Authors:Jin, Y, Roth, C, Rizkallah, P.
Deposit date:2021-07-02
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:A small alarmone hydrolase TdActApo2 mutant - T78N
To Be Published
5DDT
DownloadVisualize
BU of 5ddt by Molmil
Crystal structure of IspD from Bacillus subtilis at 1.80 Angstroms resolution, crystal form I
Descriptor: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Authors:Jin, Y, Liu, Z.C, Wang, G.G.
Deposit date:2015-08-25
Release date:2016-08-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A structural and functional study on the 2-C-methyl-d-erythritol-4-phosphate cytidyltransferase (IspD) from Bacillus subtilis.
Sci Rep, 6, 2016
1IHI
DownloadVisualize
BU of 1ihi by Molmil
Crystal Structure of Human Type III 3-alpha-Hydroxysteroid Dehydrogenase/Bile Acid Binding Protein (AKR1C2) Complexed with NADP+ and Ursodeoxycholate
Descriptor: 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE, ISO-URSODEOXYCHOLIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Jin, Y, Stayrook, S.E, Albert, R.H, Palackal, N.T, Penning, T.M, Lewis, M.
Deposit date:2001-04-19
Release date:2001-10-03
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human type III 3alpha-hydroxysteroid dehydrogenase/bile acid binding protein complexed with NADP(+) and ursodeoxycholate.
Biochemistry, 40, 2001
5JTS
DownloadVisualize
BU of 5jts by Molmil
Structure of a beta-1,4-mannanase, SsGH134.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Jin, Y, Petricevic, M, Goddard-Borger, E.D, Williams, S.J, Davies, G.J.
Deposit date:2016-05-09
Release date:2016-11-16
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:A beta-Mannanase with a Lysozyme-like Fold and a Novel Molecular Catalytic Mechanism.
ACS Cent Sci, 2, 2016
5JUG
DownloadVisualize
BU of 5jug by Molmil
Structure of an inactive (E45Q) variant of a beta-1,4-mannanase, SsGH134, in complex with Man5
Descriptor: CHLORIDE ION, GLYCEROL, alpha-D-mannopyranose, ...
Authors:Jin, Y, Petricevic, M, Goddard-Borger, E.D, Williams, S.J, Davies, G.J.
Deposit date:2016-05-10
Release date:2016-11-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:A beta-Mannanase with a Lysozyme-like Fold and a Novel Molecular Catalytic Mechanism.
ACS Cent Sci, 2, 2016
5JU9
DownloadVisualize
BU of 5ju9 by Molmil
Structure of a beta-1,4-mannanase, SsGH134, in complex with Man3.
Descriptor: CHLORIDE ION, beta-1,4-mannanase, beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose
Authors:Jin, Y, Petricevic, M, Goddard-Borger, E.D, Williams, S.J, Davies, G.J.
Deposit date:2016-05-10
Release date:2016-11-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:A beta-Mannanase with a Lysozyme-like Fold and a Novel Molecular Catalytic Mechanism.
ACS Cent Sci, 2, 2016
5G0M
DownloadVisualize
BU of 5g0m by Molmil
beta-glucuronidase with an activity-based probe (N-acyl cyclophellitol aziridine) bound
Descriptor: (1S,2R,3R,4S,6S)-6-[(8-azidooctanoyl)amino]-2,3,4-trihydroxycyclohexane-1-carboxylate, BETA-GLUCURONIDASE, PHOSPHATE ION
Authors:Jin, Y, Wu, L, Jiang, J.B, Overkleeft, H.S, Davies, G.J.
Deposit date:2016-03-21
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of a Bacteria Beta-Glucuronidase in Gh79 Family
To be Published
7Z0L
DownloadVisualize
BU of 7z0l by Molmil
IL-27 signalling complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-27 receptor subunit alpha, ...
Authors:Jin, Y, Gardner, S, Bubeck, D.
Deposit date:2022-02-23
Release date:2022-07-27
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural insights into the assembly and activation of the IL-27 signaling complex.
Embo Rep., 23, 2022
6R3V
DownloadVisualize
BU of 6r3v by Molmil
Crystal Structure of RhoA-GDP-Pi in Complex with RhoGAP
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Jin, Y.
Deposit date:2019-03-21
Release date:2019-05-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A GAP-GTPase-GDP-PiIntermediate Crystal Structure Analyzed by DFT Shows GTP Hydrolysis Involves Serial Proton Transfers.
Chemistry, 25, 2019
5M77
DownloadVisualize
BU of 5m77 by Molmil
a GH76 family enzyme structure
Descriptor: 1,2-ETHANEDIOL, 1-thio-alpha-D-mannopyranose-(1-6)-[(3S,4R,5R)-4,5-dihydroxypiperidin-3-yl]methyl 1-thio-alpha-D-mannopyranoside, Alpha-1,6-mannanase
Authors:Jin, Y, Williams, S, Davies, G.
Deposit date:2016-10-26
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:An atypical interaction explains the high-affinity of a non-hydrolyzable S-linked 1,6-alpha-mannanase inhibitor.
Chem. Commun. (Camb.), 53, 2017
5N0F
DownloadVisualize
BU of 5n0f by Molmil
The catalytic domain, BcGH76, of Bacillus circulans Aman6 in complex with 1,6-ManSIFG
Descriptor: Alpha-1,6-mannanase, [(3S,4R,5R)-4,5-dihydroxypiperidin-3-yl]methyl 1-thio-alpha-D-mannopyranoside
Authors:Jin, Y, Williams, S, Davies, G.
Deposit date:2017-02-02
Release date:2017-08-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:An atypical interaction explains the high-affinity of a non-hydrolyzable S-linked 1,6-alpha-mannanase inhibitor.
Chem. Commun. (Camb.), 53, 2017
5OHT
DownloadVisualize
BU of 5oht by Molmil
A GH31 family sulfoquinovosidase from E. coli in complex with aza-sugar inhibitor IFGSQ
Descriptor: CALCIUM ION, Sulfoquinovosidase, [(3~{S},4~{R},5~{R})-4,5-bis(oxidanyl)piperidin-3-yl]methanesulfonic acid
Authors:Jin, Y, Williams, S.J, Goddard-Borger, E, Davies, G.J.
Deposit date:2017-07-18
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and Biochemical Insights into the Function and Evolution of Sulfoquinovosidases.
ACS Cent Sci, 4, 2018
5OHS
DownloadVisualize
BU of 5ohs by Molmil
A GH31 family sulfoquinovosidase mutant D455N in complex with pNPSQ
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 4-nitrophenyl alpha-D-6-sulfoquinovoside, ...
Authors:Jin, Y, Williams, S.J, Goddard-Borger, E, Davies, G.J.
Deposit date:2017-07-18
Release date:2018-08-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and Biochemical Insights into the Function and Evolution of Sulfoquinovosidases.
ACS Cent Sci, 4, 2018
5OHY
DownloadVisualize
BU of 5ohy by Molmil
A GH31 family sulfoquinovosidase in complex with aza-sugar inhibitor IFGSQ
Descriptor: 1,2-ETHANEDIOL, Alpha-glucosidase yihQ, PHOSPHATE ION, ...
Authors:Jin, Y, Williams, S.J, Goddard-Borger, E, Davies, G.J.
Deposit date:2017-07-18
Release date:2018-08-08
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and Biochemical Insights into the Function and Evolution of Sulfoquinovosidases.
ACS Cent Sci, 4, 2018
5AED
DownloadVisualize
BU of 5aed by Molmil
A bacterial protein structure in glycoside hydrolase family 31
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ALPHA-GLUCOSIDASE YIHQ, CALCIUM ION
Authors:Jin, Y, Speciale, G, Davies, G.J, Williams, S.J, Goddard-Borger, E.D.
Deposit date:2015-08-28
Release date:2016-02-10
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Yihq is a Sulfoquinovosidase that Cleaves Sulfoquinovosyl Diacylglyceride Sulfolipids.
Nat.Chem.Biol., 12, 2016
5AEE
DownloadVisualize
BU of 5aee by Molmil
A bacterial protein structure in glycoside hydrolase family 31
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-nitrophenyl alpha-D-6-sulfoquinovoside, ALPHA-GLUCOSIDASE YIHQ, ...
Authors:Jin, Y, Speciale, G, Davies, G.J, Williams, S.J, Goddard-Borger, E.D.
Deposit date:2015-08-28
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Yihq is a Sulfoquinovosidase that Cleaves Sulfoquinovosyl Diacylglyceride Sulfolipids.
Nat.Chem.Biol., 12, 2016
5AEG
DownloadVisualize
BU of 5aeg by Molmil
A bacterial protein structure in glycoside hydrolase family 31.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-fluoro-alpha-L-idopyranose, ALPHA-GLUCOSIDASE YIHQ, ...
Authors:Jin, Y, Speciale, G, Davies, G.J, Williams, S.J, Goddard-Borger, E.D.
Deposit date:2015-08-30
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Yihq is a Sulfoquinovosidase that Cleaves Sulfoquinovosyl Diacylglyceride Sulfolipids.
Nat.Chem.Biol., 12, 2016
5L77
DownloadVisualize
BU of 5l77 by Molmil
A glycoside hydrolase mutant with an unreacted activity based probe bound
Descriptor: (1~{R},2~{S},3~{R},4~{S},5~{S},6~{R})-7-[8-[(azanylidene-{4}-azanylidene)amino]octyl]-3,4,5-tris(oxidanyl)-7-azabicyclo[4.1.0]heptane-2-carboxylic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Jin, Y, Wu, L, Jiang, J.B, Overkleeft, H.S, Davies, G.J.
Deposit date:2016-06-02
Release date:2017-05-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Activity-based probes for functional interrogation of retaining beta-glucuronidases.
Nat. Chem. Biol., 13, 2017
5FOO
DownloadVisualize
BU of 5foo by Molmil
6-phospho-beta-glucosidase
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-PHOSPHO-BETA-D GLYCOSIDASE, ...
Authors:Jin, Y, Kwan, D.H, Withers, S.G, Davies, G.J.
Deposit date:2015-11-24
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Chemoenzymatic Synthesis of 6-Phospho-Cyclophellitol as a Novel Probe of 6-Phospho-Beta-Glucosidases.
FEBS Lett., 590, 2016
5G0Q
DownloadVisualize
BU of 5g0q by Molmil
beta-glucuronidase with an activity-based probe (N-alkyl cyclophellitol aziridine) bound
Descriptor: (1R,2S,3R,4S,5S,6R)-7-(8-AZIDOOCTYL)-3,4,5-TRIHYDROXY-, BETA-GLUCURONIDASE, GLYCEROL
Authors:Jin, Y, Wu, L, Jiang, J.B, Overkleeft, H.S, Davies, G.J.
Deposit date:2016-03-22
Release date:2017-04-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Activity-based probes for functional interrogation of retaining beta-glucuronidases.
Nat. Chem. Biol., 13, 2017
8BDP
DownloadVisualize
BU of 8bdp by Molmil
A GH20 family sulfoglycosidase Bt4394 in complex with NAG-thiazoline and sulfite
Descriptor: Beta-N-acetylhexosaminidase, CHLORIDE ION
Authors:Zhang, Z, He, Y, Jin, Y.
Deposit date:2022-10-19
Release date:2023-01-11
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases
Acs Catalysis, 2022

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon