Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3GVT
DownloadVisualize
BU of 3gvt by Molmil
Structure and RNA binding of the mouse Pumilio-2 Puf Domain
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCEROL, Pumilio homolog 2
Authors:Jenkins, H.T, Edwards, T.A.
Deposit date:2009-03-31
Release date:2009-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and RNA binding of the mouse Pumilio-2 Puf domain
J.Struct.Biol., 167, 2009
3GVO
DownloadVisualize
BU of 3gvo by Molmil
Structure and RNA binding of the mouse Pumilio-2 Puf Domain
Descriptor: DITHIANE DIOL, GLYCEROL, Pumilio homolog 2
Authors:Jenkins, H.T, Edwards, T.A.
Deposit date:2009-03-31
Release date:2009-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and RNA binding of the mouse Pumilio-2 Puf domain
J.Struct.Biol., 167, 2009
2XS2
DownloadVisualize
BU of 2xs2 by Molmil
Crystal structure of the RRM domain of mouse Deleted in azoospermia-like in complex with RNA, UUGUUCUU
Descriptor: 5'-R(*UP*UP*GP*UP*UP*CP*UP*U)-3', DELETED IN AZOOSPERMIA-LIKE, ZINC ION
Authors:Jenkins, H.T, Edwards, T.A.
Deposit date:2010-09-24
Release date:2011-10-05
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Kinked beta-strands mediate high-affinity recognition of mRNA targets by the germ-cell regulator DAZL.
Proc. Natl. Acad. Sci. U.S.A., 108, 2011
2XS7
DownloadVisualize
BU of 2xs7 by Molmil
Crystal structure of the RRM domain of mouse Deleted in azoospermia- like in complex with Sycp3 RNA, UUGUUU
Descriptor: 5'-R(*UP*UP*GP*UP*UP*UP)-3', DELETED IN AZOOSPERMIA-LIKE, ZINC ION
Authors:Jenkins, H.T, Edwards, T.A.
Deposit date:2010-09-24
Release date:2011-10-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Kinked Beta-Strands Mediate High-Affinity Recognition of Mrna Targets by the Germ-Cell Regulator Dazl
Proc.Natl.Acad.Sci.USA, 108, 2011
2XS5
DownloadVisualize
BU of 2xs5 by Molmil
Crystal structure of the RRM domain of mouse Deleted in azoospermia- like in complex with Mvh RNA, UGUUC
Descriptor: 5'-R(*UP*GP*UP*UP*CP)-3', DELETED IN AZOOSPERMIA-LIKE, DI(HYDROXYETHYL)ETHER
Authors:Jenkins, H.T, Edwards, T.A.
Deposit date:2010-09-24
Release date:2011-10-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Kinked Beta-Strands Mediate High-Affinity Recognition of Mrna Targets by the Germ-Cell Regulator Dazl
Proc.Natl.Acad.Sci.USA, 108, 2011
2XSF
DownloadVisualize
BU of 2xsf by Molmil
Crystal structure of the RRM domain of mouse Deleted in azoospermia- like
Descriptor: DELETED IN AZOOSPERMIA-LIKE, GLYCEROL, SULFATE ION
Authors:Jenkins, H.T, Edwards, T.A.
Deposit date:2010-09-28
Release date:2011-10-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Kinked Beta-Strands Mediate High-Affinity Recognition of Mrna Targets by the Germ-Cell Regulator Dazl
Proc.Natl.Acad.Sci.USA, 108, 2011
2A55
DownloadVisualize
BU of 2a55 by Molmil
Solution structure of the two N-terminal CCP modules of C4b-binding protein (C4BP) alpha-chain.
Descriptor: C4b-binding protein
Authors:Jenkins, H.T, Mark, L, Ball, G, Lindahl, G, Uhrin, D, Blom, A.M, Barlow, P.N.
Deposit date:2005-06-30
Release date:2005-12-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Human C4b-binding Protein, Structural Basis for Interaction with Streptococcal M Protein, a Major Bacterial Virulence Factor
J.Biol.Chem., 281, 2006
5MFX
DownloadVisualize
BU of 5mfx by Molmil
Zika NS3 helicase:RNA complex
Descriptor: ACETATE ION, CITRATE ANION, Genome polyprotein, ...
Authors:Jenkins, H.T, Ge, M, Chechik, M, Greive, S.J, Antson, A.A.
Deposit date:2016-11-18
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:How Zika virus NS3 helicase grips the first nucleotide of the leading RNA strand
To Be Published
7AVJ
DownloadVisualize
BU of 7avj by Molmil
Streptococcal High Identity Repeats in Tandem (SHIRT) domain 2 from cell surface protein SGO_0707
Descriptor: LPXTG cell wall surface protein
Authors:Whelan, F, Jenkins, H.T, Potts, J.R.
Deposit date:2020-11-05
Release date:2021-06-09
Last modified:2021-06-16
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Periscope Proteins are variable-length regulators of bacterial cell surface interactions.
Proc.Natl.Acad.Sci.USA, 118, 2021
8POP
DownloadVisualize
BU of 8pop by Molmil
HK97 small terminase in complex with DNA
Descriptor: DNA (31-MER), Terminase small subunit
Authors:Chechik, M, Greive, S.J, Antson, A.A, Jenkins, H.T.
Deposit date:2023-07-05
Release date:2023-08-09
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of HK97 small terminase:DNA complex unveils a novel DNA binding mechanism by a circular protein.
Biorxiv, 2023
7AVH
DownloadVisualize
BU of 7avh by Molmil
Streptococcal High Identity Repeats in Tandem (SHIRT) domains 3-4 from cell surface protein SGO_0707
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, LPXTG cell wall surface protein
Authors:Whelan, F, Jenkins, H.T, Potts, J.R.
Deposit date:2020-11-05
Release date:2021-06-09
Last modified:2021-06-16
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Periscope Proteins are variable-length regulators of bacterial cell surface interactions.
Proc.Natl.Acad.Sci.USA, 118, 2021
7AVK
DownloadVisualize
BU of 7avk by Molmil
Streptococcal High Identity Repeats in Tandem (SHIRT) domain 10 from cell surface protein SGO_0707
Descriptor: LPXTG cell wall surface protein, isothiocyanate
Authors:Degut, C, Gilburt, J, Whelan, F, Jenkins, H.T, Potts, J.R.
Deposit date:2020-11-05
Release date:2021-06-09
Last modified:2021-06-16
Method:X-RAY DIFFRACTION (0.82 Å)
Cite:Periscope Proteins are variable-length regulators of bacterial cell surface interactions.
Proc.Natl.Acad.Sci.USA, 118, 2021
6SE1
DownloadVisualize
BU of 6se1 by Molmil
Structure of Salmonella ser. Paratyphi A lipopolysaccharide acetyltransferase periplasmic domain
Descriptor: DI(HYDROXYETHYL)ETHER, Putative lipopolysaccharide modification acyltransferase, SULFATE ION
Authors:Tindall, S.N, Pearson, C, Herman, R, Jenkins, H.T, Thomas, G.H, Potts, J.R, Van der Woude, M.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2020-09-16
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Acetylation of Surface Carbohydrates in Bacterial Pathogens Requires Coordinated Action of a Two-Domain Membrane-Bound Acyltransferase.
Mbio, 11, 2020
6S0J
DownloadVisualize
BU of 6s0j by Molmil
Structure of Zika virus NS3 helicase in complex with ADP-MgF3(H2O)-
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Genome polyprotein, MAGNESIUM ION, ...
Authors:Ge, M, Molt Jr, R.W, Jenkins, H.T, Blackburn, G.M, Jin, Y, Antson, A.A.
Deposit date:2019-06-16
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:New MFx transition state analog reveals the molecular mechanism of ATP hydrolysis by the Zika virus NS3 helicase
To Be Published
6RWZ
DownloadVisualize
BU of 6rwz by Molmil
Structure of Zika virus NS3 helicase in complex with ADP-BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MANGANESE (II) ION, ...
Authors:Ge, M, Molt Jr, R.W, Jenkins, H.T, Blackburn, G.M, Jin, Y, Antson, A.A.
Deposit date:2019-06-07
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:New MFx transition state analog reveals molecular mechanism of NTP hydrolysis by the Zika virus NS3 helicase
To Be Published
6EJQ
DownloadVisualize
BU of 6ejq by Molmil
Crystal structure of a C-terminally truncated small terminase protein from the thermophilic bacteriophage G20c
Descriptor: Terminase small subunit
Authors:Xu, R.G, Loredo-Varela, J, Jenkins, H.T, Antson, A.A.
Deposit date:2017-09-22
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a C-terminally truncated small terminase protein from the thermophilic bacteriophage G20c
To Be Published
7NT6
DownloadVisualize
BU of 7nt6 by Molmil
CryoEM structure of the Nipah virus nucleocapsid spiral clam-shaped assembly
Descriptor: Nucleoprotein, RNA (42-MER), RNA (48-MER)
Authors:Ker, D.S, Jenkins, H.T, Greive, S.J, Antson, A.A.
Deposit date:2021-03-09
Release date:2021-07-07
Last modified:2021-07-28
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:CryoEM structure of the Nipah virus nucleocapsid assembly.
Plos Pathog., 17, 2021
7NT5
DownloadVisualize
BU of 7nt5 by Molmil
CryoEM structure of the Nipah virus nucleocapsid single helical turn assembly
Descriptor: Nucleoprotein, RNA (78-MER)
Authors:Ker, D.S, Jenkins, H.T, Greive, S.J, Antson, A.A.
Deposit date:2021-03-09
Release date:2021-07-07
Last modified:2021-07-28
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:CryoEM structure of the Nipah virus nucleocapsid assembly.
Plos Pathog., 17, 2021
4XP7
DownloadVisualize
BU of 4xp7 by Molmil
Crystal structure of Human tRNA dihydrouridine synthase 2
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
Authors:Whelan, F, Jenkins, H.T, Griffiths, S, Byrne, R.T, Dodson, E.J, Antson, A.A.
Deposit date:2015-01-16
Release date:2015-01-28
Last modified:2015-07-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:From bacterial to human dihydrouridine synthase: automated structure determination.
Acta Crystallogr.,Sect.D, 71, 2015
4XVN
DownloadVisualize
BU of 4xvn by Molmil
Crystal structure of the small terminase from thermophilic phage G20C
Descriptor: Small terminase
Authors:Loredo-Varela, J, Jenkins, H.T, Chechik, M, Greive, S.J, Antson, A.A.
Deposit date:2015-01-27
Release date:2016-02-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the small terminase from thermophilic phage G20C
To Be Published
4YCP
DownloadVisualize
BU of 4ycp by Molmil
E. coli dihydrouridine synthase C (DusC) in complex with tRNATrp
Descriptor: FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, SULFATE ION, ...
Authors:Byrne, R.T, Jenkins, H.T, Peters, D.T, Whelan, F, Stowell, J, Aziz, N, Kasatsky, P, Rodnina, M.V, Koonin, E.V, Konevega, A.L, Antson, A.A.
Deposit date:2015-02-20
Release date:2015-04-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
4YCO
DownloadVisualize
BU of 4yco by Molmil
E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe
Descriptor: FLAVIN MONONUCLEOTIDE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Byrne, R.T, Jenkins, H.T, Peters, D.T, Whelan, F, Stowell, J, Aziz, N, Kasatsky, P, Rodnina, M.V, Koonin, E.V, Konevega, A.L, Antson, A.A.
Deposit date:2015-02-20
Release date:2015-04-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
4ZC3
DownloadVisualize
BU of 4zc3 by Molmil
DNA binding domain of small terminase SF6 phage
Descriptor: Terminase small subunit
Authors:Antson, A.A, Chechik, M, Jenkins, H.T, Greive, S.J.
Deposit date:2015-04-15
Release date:2015-12-30
Last modified:2016-02-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:DNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif.
Nucleic Acids Res., 44, 2016
5M1O
DownloadVisualize
BU of 5m1o by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c with bound Cobalt
Descriptor: COBALT (II) ION, Phage terminase large subunit
Authors:Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
Deposit date:2016-10-09
Release date:2016-10-26
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017
5M1F
DownloadVisualize
BU of 5m1f by Molmil
Crystal structure of the large terminase nuclease from thermophilic phage G20c
Descriptor: Phage terminase large subunit
Authors:Xu, R.G, Jenkins, H.T, Chechik, M, Blagova, E.V, Greive, S.J, Antson, A.A.
Deposit date:2016-10-07
Release date:2016-10-26
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Viral genome packaging terminase cleaves DNA using the canonical RuvC-like two-metal catalysis mechanism.
Nucleic Acids Res., 45, 2017

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon