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1B10
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BU of 1b10 by Molmil
SOLUTION NMR STRUCTURE OF RECOMBINANT SYRIAN HAMSTER PRION PROTEIN RPRP(90-231) , 25 STRUCTURES
Descriptor: PROTEIN (PRION PROTEIN)
Authors:James, T.L, Liu, H, Ulyanov, N.B, Farr-Jones, S.
Deposit date:1998-11-25
Release date:1998-12-02
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform.
Proc.Natl.Acad.Sci.USA, 94, 1997
2P2R
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BU of 2p2r by Molmil
Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA
Descriptor: 6-AMINOPYRIMIDIN-2(1H)-ONE, C-rich strand of human telomeric DNA, Poly(rC)-binding protein 2
Authors:James, T.L, Stroud, R.M, Du, Z, Fenn, S, Tjhen, R, Lee, J.K.
Deposit date:2007-03-07
Release date:2007-06-12
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution.
Nucleic Acids Res., 35, 2007
2PQU
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BU of 2pqu by Molmil
Crystal structure of KH1 domain of human PCBP2 complexed to single-stranded 12-mer telomeric dna
Descriptor: 12-mer C-rich strand of human telomeric DNA, Poly(rC)-binding protein 2
Authors:James, T.L, Lee, J.
Deposit date:2007-05-02
Release date:2007-06-12
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
Rna, 13, 2007
2PY9
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BU of 2py9 by Molmil
Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2
Descriptor: 12-mer C-rich strand of human telomeric RNA, Poly(rC)-binding protein 2
Authors:James, T.L, Du, Z, Lee, J.K.
Deposit date:2007-05-15
Release date:2007-06-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
Rna, 13, 2007
1BAU
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BU of 1bau by Molmil
NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE
Descriptor: SL1 RNA DIMER
Authors:Mujeeb, A, Clever, J.L, Billeci, T.M, James, T.L, Parslow, T.G.
Deposit date:1998-04-18
Release date:1999-04-27
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the dimer initiation complex of HIV-1 genomic RNA.
Nat.Struct.Biol., 5, 1998
141D
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BU of 141d by Molmil
SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA
Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')
Authors:Mujeeb, A, James, T.L.
Deposit date:1993-09-24
Release date:1994-04-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry, 32, 1993
140D
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BU of 140d by Molmil
SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA
Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')
Authors:Mujeeb, A, Kerwin, S.M, Kenyon, G.L, James, T.L.
Deposit date:1993-09-24
Release date:1994-04-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry, 32, 1993
142D
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BU of 142d by Molmil
SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA
Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3')
Authors:Mujeeb, A, James, T.L.
Deposit date:1993-09-24
Release date:1994-04-30
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry, 32, 1993
219D
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BU of 219d by Molmil
DNA/RNA HYBRID DUPLEX (5'-D(*GP*CP*TP*AP*TP*AP*APS*TP*GP*G)-3')(DOT) (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') WITH A PHOSPHOROTHIOATE MOIETY
Descriptor: DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*GP*G)-3'), RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
Authors:Gonzalez, C, James, T.L.
Deposit date:1995-07-25
Release date:1995-10-15
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry, 34, 1995
1SLS
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BU of 1sls by Molmil
IMMOBILE SLIPPED-LOOP STRUCTURE (SLS) OF DNA HOMODIMER IN SOLUTION, NMR, 9 STRUCTURES
Descriptor: OLIGODEOXYRIBONUCLEOTIDE
Authors:Ulyanov, N.B, Ivanov, V.I, Minyat, E.E, Khomyakova, E.B, Petrova, M.V, Lesiak, K, James, T.L.
Deposit date:1997-09-30
Release date:1998-04-08
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:A pseudosquare knot structure of DNA in solution.
Biochemistry, 37, 1998
1SKP
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BU of 1skp by Molmil
NMR STRUCTURE OF D(GCATATGATAG)(DOT)D(CTATCATATGC): A CONSENSUS SEQUENCE FOR PROMOTERS RECOGNIZED BY SIGMA-K RNA POLYMERASE, 4 STRUCTURES
Descriptor: SIGMA-K RNA POLYMERASE CONSENSUS SEQUENCE
Authors:Tonelli, M, Ragg, E, Bianucci, A.M, Lesiak, K, James, T.L.
Deposit date:1998-05-20
Release date:1999-01-13
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance structure of d(GCATATGATAG). d(CTATCATATGC): a consensus sequence for promoters recognized by sigma K RNA polymerase.
Biochemistry, 37, 1998
1TXS
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BU of 1txs by Molmil
STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA
Descriptor: Enteroviral 5'-UTR
Authors:Du, Z, Yu, J, Ulyanov, N.B, Andino, R, James, T.L.
Deposit date:2004-07-06
Release date:2004-10-05
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of a Consensus Stem-Loop D RNA Domain that Plays Important Roles in Regulating Translation and Replication in Enteroviruses and Rhinoviruses
Biochemistry, 43, 2004
3C4B
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BU of 3c4b by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
Descriptor: Endoribonuclease Dicer
Authors:Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
Deposit date:2008-01-29
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C4T
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BU of 3c4t by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
Descriptor: CADMIUM ION, Endoribonuclease Dicer
Authors:Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
Deposit date:2008-01-30
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
1D42
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BU of 1d42 by Molmil
SOLUTION STRUCTURE OF [D(GTATATAC)]2 VIA RESTRAINED MOLECULAR DYNAMICS SIMULATIONS WITH NUCLEAR MAGNETIC RESONANCE CONSTRAINTS DERIVED FROM RELAXATION MATRIX ANALYSIS OF TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT EXPERIMENTS
Descriptor: DNA (5'-D(*GP*TP*AP*TP*AP*TP*AP*C)-3')
Authors:Schmitz, U, James, T.L.
Deposit date:1991-05-15
Release date:1993-04-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments.
J.Mol.Biol., 221, 1991
28SP
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BU of 28sp by Molmil
NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA
Descriptor: CONSERVED MOTIF IN SRP RNA
Authors:Schmitz, U, James, T.L, Lukavsky, P, Walter, P.
Deposit date:1999-04-07
Release date:1999-04-12
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the most conserved internal loop in SRP RNA.
Nat.Struct.Biol., 6, 1999
28SR
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BU of 28sr by Molmil
NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA
Descriptor: SRP DOMAIN IV
Authors:Schmitz, U, James, T.L, Lukavsky, P, Walter, P.
Deposit date:1999-04-15
Release date:1999-04-20
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the most conserved internal loop in SRP RNA.
Nat.Struct.Biol., 6, 1999
2AXY
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BU of 2axy by Molmil
Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA
Descriptor: C-rich strand of human telomeric dna, Poly(rC)-binding protein 2
Authors:Du, Z, Lee, J.K, Tjhen, R.J, Li, S, Stroud, R.M, James, T.L.
Deposit date:2005-09-06
Release date:2005-09-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the First KH Domain of Human Poly(C)-binding Protein-2 in Complex with a C-rich Strand of Human Telomeric DNA at 1.7 A
J.Biol.Chem., 280, 2005
2GM0
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BU of 2gm0 by Molmil
Linear dimer of stemloop SL1 from HIV-1
Descriptor: RNA (35-MER)
Authors:Ulyanov, N.B, Mujeeb, A, Du, Z, Tonelli, M, Parslow, T.G, James, T.L.
Deposit date:2006-04-05
Release date:2006-04-25
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:NMR Structure of the Full-length Linear Dimer of Stem-Loop-1 RNA in the HIV-1 Dimer Initiation Site.
J.Biol.Chem., 281, 2006
1R7W
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BU of 1r7w by Molmil
NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE
Descriptor: 34-MER
Authors:Du, Z, Ulyanov, N.B, Yu, J, James, T.L.
Deposit date:2003-10-22
Release date:2004-05-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,).
Biochemistry, 43, 2004
1R7Z
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BU of 1r7z by Molmil
NMR STRUCTURE OF THE R(GGAGGACAUUCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUUCCU BULGE
Descriptor: 34-MER
Authors:Du, Z, Ulyanov, N.B, Yu, J, James, T.L.
Deposit date:2003-10-22
Release date:2004-05-25
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,).
Biochemistry, 43, 2004
1CQ5
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BU of 1cq5 by Molmil
NMR STRUCTURE OF SRP RNA DOMAIN IV
Descriptor: SRP RNA DOMAIN IV
Authors:Schmitz, U, James, T.L, Behrens, S, Freymann, D.M, Lukavsky, P, Walter, P.
Deposit date:1999-08-05
Release date:1999-08-23
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the phylogenetically most conserved domain of SRP RNA.
RNA, 5, 1999
1CQL
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BU of 1cql by Molmil
NMR STRUCTURE OF SRP RNA DOMAIN IV
Descriptor: SRP DOMAIN IV RNA
Authors:Schmitz, U, James, T.L.
Deposit date:1999-08-06
Release date:2000-01-14
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structure of the phylogenetically most conserved domain of SRP RNA.
RNA, 5, 1999
1D70
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BU of 1d70 by Molmil
SOLUTION STRUCTURE OF A DNA OCTAMER CONTAINING THE PRIBNOW BOX VIA RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE CONSTRAINTS DERIVED FROM TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE SPECTRAL FITTING
Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*TP*AP*AP*TP*G)-3')
Authors:Schmitz, U, James, T.L.
Deposit date:1992-04-15
Release date:1993-04-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting.
J.Mol.Biol., 227, 1992
1JVE
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BU of 1jve by Molmil
NMR Structure of an AT-Rich DNA with the GAA-Hairpin Loop
Descriptor: AT-Rich DNA with the GAA-Hairpin Loop
Authors:Ulyanov, N.B, Bauer, W.R, James, T.L.
Deposit date:2001-08-29
Release date:2002-05-22
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:High-resolution NMR structure of an AT-rich DNA sequence.
J.Biomol.NMR, 22, 2002

 

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