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2MX1
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BU of 2mx1 by Molmil
Structure of the E. coli Threonylcarbamoyl-AMP Synthase TSAC
Descriptor: Threonylcarbamoyl-AMP synthase
Authors:Harris, K.A, Bobay, B.G, Sarachan, K.L, Sims, A.F, Bilbille, Y, Deutsch, C, Iwata-Reuyl, D, Agris, P.F.
Deposit date:2014-12-06
Release date:2015-06-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR-based Structural Analysis of Threonylcarbamoyl-AMP Synthase and Its Substrate Interactions.
J.Biol.Chem., 290, 2015
5UDG
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BU of 5udg by Molmil
Mutant E97Q crystal structure of Bacillus subtilis QueF with a disulfide Cys 55-99
Descriptor: MAGNESIUM ION, NADPH-dependent 7-cyano-7-deazaguanine reductase, TRIETHYLENE GLYCOL
Authors:Mohammad, A, Kiani, M.K, Iwata-Reuyl, D, Stec, B, Swairjo, M.
Deposit date:2016-12-27
Release date:2017-03-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Protection of the Queuosine Biosynthesis Enzyme QueF from Irreversible Oxidation by a Conserved Intramolecular Disulfide.
Biomolecules, 7, 2017
3D2O
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BU of 3d2o by Molmil
Crystal Structure of Manganese-metallated GTP Cyclohydrolase Type IB
Descriptor: AZIDE ION, CHLORIDE ION, LITHIUM ION, ...
Authors:Swairjo, M.A.
Deposit date:2008-05-08
Release date:2009-05-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Zinc-independent folate biosynthesis: genetic, biochemical, and structural investigations reveal new metal dependence for GTP cyclohydrolase IB
J.Bacteriol., 191, 2009
5K9G
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BU of 5k9g by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with Tris
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, ...
Authors:Alvarez, J, Stec, B, Swairjo, M.A.
Deposit date:2016-05-31
Release date:2016-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
6N9A
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BU of 6n9a by Molmil
Crystal Structure of Thermotoga maritima threonylcarbamoyladenosine biosynthesis complex TsaB2D2E2 bound to ATP and carboxy-AMP
Descriptor: 2-(2-ETHOXYETHOXY)ETHANOL, 5'-O-[(R)-(carboxyoxy)(hydroxy)phosphoryl]adenosine, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Swairjo, M.A, Stec, B.
Deposit date:2018-12-01
Release date:2019-05-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Conformational communication mediates the reset step in t6A biosynthesis.
Nucleic Acids Res., 47, 2019
8DL3
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BU of 8dl3 by Molmil
Crystal structure of the human queuine salvage enzyme DUF2419, complexed with queuine
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Queuosine salvage protein
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-07-06
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
5CAJ
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BU of 5caj by Molmil
Crystal structure of E. coli YaaA, a member of the DUF328/UPF0246 family
Descriptor: BENZAMIDINE, CHLORIDE ION, UPF0246 protein YaaA
Authors:Prahlad, J, Lin, J, Wilson, M.A.
Deposit date:2015-06-29
Release date:2016-02-24
Last modified:2020-10-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The DUF328 family member YaaA is a DNA-binding protein with a novel fold.
J.Biol.Chem., 295, 2020
5JYX
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BU of 5jyx by Molmil
Crystal structure of the covalent thioimide intermediate of the archaeosine synthase QueF-Like
Descriptor: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, Archeaosine synthase QueF-Like, SODIUM ION
Authors:Mei, X, Swairjo, M.A.
Deposit date:2016-05-15
Release date:2016-11-09
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.
Proteins, 85, 2017
5K0P
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BU of 5k0p by Molmil
Crystal structure of the archaeosine synthase QueF-Like in the apo form
Descriptor: Archeaosine synthase QueF-Like, TETRAETHYLENE GLYCOL, THIOCYANATE ION, ...
Authors:Mei, X, Swairjo, M.A.
Deposit date:2016-05-17
Release date:2016-11-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.
Proteins, 85, 2017
5K95
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BU of 5k95 by Molmil
Crystal Structure of GTP Cyclohydrolase-IB with 8-oxo-GTP
Descriptor: 8-OXO-GUANOSINE-5'-TRIPHOSPHATE, GTP cyclohydrolase FolE2, ZINC ION
Authors:Alvarez, J, Stec, B, Swairjo, M.A.
Deposit date:2016-05-31
Release date:2016-09-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Mechanism and catalytic strategy of the prokaryotic-specific GTP cyclohydrolase-IB.
Biochem.J., 474, 2017
4F8B
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BU of 4f8b by Molmil
Crystal Structure of the Covalent Thioimide Intermediate of Unimodular Nitrile Reductase QueF
Descriptor: 2-amino-5-[(Z)-iminomethyl]-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, MAGNESIUM ION, ...
Authors:Stec, B, Swairjo, M.A.
Deposit date:2012-05-17
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
4FGC
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BU of 4fgc by Molmil
Crystal Structure of Active Site Mutant C55A of Nitrile Reductase QueF, Bound to Substrate PreQ0
Descriptor: 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, CALCIUM ION, ...
Authors:Stec, B, Swairjo, M.A.
Deposit date:2012-06-04
Release date:2012-07-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Structural basis of biological nitrile reduction.
J.Biol.Chem., 287, 2012
7UGK
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BU of 7ugk by Molmil
Crystal structure of the human queuine salvage enzyme DUF2419, wild-type apo form
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Queuosine salvage protein DUF2419
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-03-24
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U1O
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BU of 7u1o by Molmil
Crystal structure of queuine salvage enzyme DUF2419 complexed with queuosine
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, DI(HYDROXYETHYL)ETHER, MALONATE ION, ...
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-02-21
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U91
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BU of 7u91 by Molmil
Crystal structure of queuine salvage enzyme DUF2419, in complex with queuosine-5'-monophosphate
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-03-09
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U07
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BU of 7u07 by Molmil
Crystal structure of queuine salvage enzyme DUF2419, apo form
Descriptor: Queuine salvage enzyme DUF2419
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-02-17
Release date:2022-12-21
Last modified:2023-02-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7U5A
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BU of 7u5a by Molmil
Crystal structure of queuine salvage enzyme DUF2419 mutant K199C, complexed with queuosine
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-beta-D-ribofuranosyl-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, MALONATE ION, Queuine salvage enzyme DUF2419
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-03-01
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7UK3
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BU of 7uk3 by Molmil
Crystal structure of queuine salvage enzyme DUF2419, wild-type (non-His6x tagged)
Descriptor: Queuosine salvage protein DUF2419
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-03-31
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023
7UI4
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BU of 7ui4 by Molmil
Crystal structure of the DNA preQ0 insertase DpdA
Descriptor: DNA-guanine transglycosylase, ZINC ION
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-03-28
Release date:2023-02-22
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:7-Deazaguanines in DNA: functional and structural elucidation of a DNA modification system.
Nucleic Acids Res., 51, 2023
7ULC
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BU of 7ulc by Molmil
Crystal structure of queuine salvage enzyme DUF2419 mutant D231N, in complex with queuosine-5'-monophosphate
Descriptor: 2-amino-5-({[(1S,4S,5R)-4,5-dihydroxycyclopent-2-en-1-yl]amino}methyl)-7-(5-O-phosphono-beta-D-ribofuranosyl)-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one, DI(HYDROXYETHYL)ETHER, Queuosine salvage protein DUF2419
Authors:Hung, S.-H, Swairjo, M.A.
Deposit date:2022-04-04
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5'-monophosphate as the biological substrate.
Nucleic Acids Res., 51, 2023

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