Author results

2EVX
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CRYSTAL STRUCTURE OF PUMPKIN SEED GLOBULIN
Descriptor:11S globulin beta subunit, MAGNESIUM ION
Authors:Itoh, T., Fukuda, T., Mikami, B., Utsumi, S.
Deposit date:2005-11-01
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Pumpkin Seed Globulin
To be Published
5GZT
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, SODIUM ION, PHOSPHATE ION, ...
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2017-01-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZU
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZV
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, N-ACETYL-D-GLUCOSAMINE, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
1FP3
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CRYSTAL STRUCTURE OF N-ACYL-D-GLUCOSAMINE 2-EPIMERASE FROM PORCINE KIDNEY
Descriptor:N-ACYL-D-GLUCOSAMINE 2-EPIMERASE
Authors:Itoh, T., Mikami, B., Maru, I., Ohta, Y., Hashimoto, W., Murata, K.
Deposit date:2000-08-30
Release date:2000-11-22
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of N-acyl-D-glucosamine 2-epimerase from porcine kidney at 2.0 A resolution.
J.Mol.Biol., 303, 2000
1VD5
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CRYSTAL STRUCTURE OF UNSATURATED GLUCURONYL HYDROLASE, RESPONSIBLE FOR THE DEGRADATION OF GLYCOSAMINOGLYCAN, FROM BACILLUS SP. GL1 AT 1.8 A RESOLUTION
Descriptor:unsaturated glucuronyl hydrolase, GLYCINE, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ...
Authors:Itoh, T., Akao, S., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2004-03-18
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
J.Biol.Chem., 279, 2004
2AHF
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UNSATURATED GLUCURONYL HYDROLASE MUTANT D88N
Descriptor:unsaturated glucuronyl hydrolase
Authors:Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2005-07-28
Release date:2006-08-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM
J.Biol.Chem., 281, 2006
2AHG
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UNSATURATED GLUCURONYL HYDROLASE MUTANT D88N WITH DGLCA-GALNAC
Descriptor:unsaturated glucuronyl hydrolase, (4S,5R,6R)-6-((2R,3R,4R,5R,6R)-3-ACETAMIDO-2,5-DIHYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-4-YLOXY)-4,5-DIHYDROXY-5,6-DIHYDRO-4H-PYRAN-2-CARBOXYLIC ACID
Authors:Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2005-07-28
Release date:2006-08-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM
J.Biol.Chem., 281, 2006
2CV6
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CRYSTAL STRUCTURE OF 8SALPHA GLOBULIN, THE MAJOR SEED STORAGE PROTEIN OF MUNGBEAN
Descriptor:Seed storage protein
Authors:Itoh, T., Garcia, R.N., Adachi, M., Maruyama, Y., Tecson-Mendoza, E.M., Mikami, B., Utsumi, S.
Deposit date:2005-05-31
Release date:2006-06-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of 8Salpha globulin, the major seed storage protein of mung bean.
Acta Crystallogr.,Sect.D, 62, 2006
2D5J
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UNSATURATED GLUCURONYL HYDROLASE TRIGGERS HYDRATION OF VINYL ETHER GROUP BUT NOT OF GLYCOSIDIC BOND
Descriptor:unsaturated glucuronyl hydrolase
Authors:Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2005-11-02
Release date:2006-08-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM
J.Biol.Chem., 281, 2006
2D8L
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CRYSTAL STRUCTURE OF UNSATURATED RHAMNOGALACTURONYL HYDROLASE IN COMPLEX WITH DGLCA-GALNAC
Descriptor:Putative glycosyl hydrolase yteR, (4S,5R,6R)-6-((2R,3R,4R,5R,6R)-3-ACETAMIDO-2,5-DIHYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-4-YLOXY)-4,5-DIHYDROXY-5,6-DIHYDRO-4H-PYRAN-2-CARBOXYLIC ACID
Authors:Itoh, T., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2005-12-06
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide
J.Mol.Biol., 360, 2006
2FUZ
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UGL HEXAGONAL CRYSTAL STRUCTURE WITHOUT GLYCINE AND DTT MOLECULES
Descriptor:Unsaturated glucuronyl hydrolase, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2006-01-28
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
2FV0
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UGL_D88N/DGLCA-GLC-RHA-GLC
Descriptor:Unsaturated glucuronyl hydrolase, BETA-D-GLUCOSE, ALPHA-L-RHAMNOSE, ...
Authors:Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2006-01-28
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
2FV1
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UGL_D88N/DGLCA-GLCNAC
Descriptor:Unsaturated glucuronyl hydrolase, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, 2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID
Authors:Itoh, T., Hashimoto, W., Mikami, B., Murata, K.
Deposit date:2006-01-28
Release date:2006-05-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
2GH4
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YTER/D143N/DGALA-RHA
Descriptor:Putative glycosyl hydrolase yteR, ALPHA-L-RHAMNOSE, 2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID
Authors:Itoh, T., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2006-03-25
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate
Biochem.Biophys.Res.Commun., 347, 2006
2RGK
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FUNCTIONAL ANNOTATION OF ESCHERICHIA COLI YIHS-ENCODED PROTEIN
Descriptor:Uncharacterized sugar isomerase yihS, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-03
Release date:2008-08-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase
J.Mol.Biol., 377, 2008
2VSR
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 9-(S)-HODE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (9S,10E,12Z)-9-hydroxyoctadeca-10,12-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-04-29
Release date:2008-08-19
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VST
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 13-(S)-HODE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-04-29
Release date:2008-08-19
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV0
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DHA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV1
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-HDHA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (4S,5E,7Z,10Z,13Z,16Z,19Z)-4-hydroxydocosa-5,7,10,13,16,19-hexaenoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV2
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 5-HEPA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (5R,6E,8Z,11Z,14Z,17Z)-5-hydroxyicosa-6,8,11,14,17-pentaenoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VV3
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-OXODHA
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19-pentaenoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural Basis for the Activation of Ppargamma by Oxidized Fatty Acids.
Nat.Struct.Mol.Biol., 15, 2008
2VV4
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HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 6-OXOOTE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (8R,9Z,12Z)-8-hydroxy-6-oxooctadeca-9,12-dienoic acid, (8E,10S,12Z)-10-hydroxy-6-oxooctadeca-8,12-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-06-02
Release date:2008-08-19
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2ZBL
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FUNCTIONAL ANNOTATION OF SALMONELLA ENTERICA YIHS-ENCODED PROTEIN
Descriptor:Putative isomerase, BETA-D-MANNOSE
Authors:Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2007-10-24
Release date:2008-02-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase
J.Mol.Biol., 377, 2008
3A09
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CRYSTAL STRUCTURE OF SPHINGOMONAS SP. A1 ALGINATE-BINDING PROTEIN ALGQ1 IN COMPLEX WITH UNSATURATED TRIMANNURONATE
Descriptor:AlgQ1, 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid, beta-D-mannuronic acid, ...
Authors:Itoh, T., Mikami, B., Hashimoto, W., Murata, K.
Deposit date:2009-03-12
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate
To be Published