Author results

2DQ0
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CRYSTAL STRUCTURE OF SERYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH A SERYL-ADENYLATE ANALOG
Descriptor:Seryl-tRNA synthetase, SULFATE ION, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE
Authors:Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-18
Release date:2007-06-05
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
2DQ3
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CRYSTAL STRUCTURE OF AQ_298
Descriptor:Seryl-tRNA synthetase, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE
Authors:Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-05-18
Release date:2007-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of aq_298
To be Published
2YYE
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CRYSTAL STRUCTURE OF SELENOPHOSPHATE SYNTHETASE FROM AQUIFEX AEOLICUS COMPLEXED WITH AMPCPP
Descriptor:Selenide, water dikinase, COBALT (II) ION, ...
Authors:Itoh, Y., Sekine, S., Matsumoto, E., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-29
Release date:2008-04-29
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs
J.Mol.Biol., 385, 2009
2ZR2
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CRYSTAL STRUCTURE OF SERYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ATP
Descriptor:Seryl-tRNA synthetase, ADENOSINE MONOPHOSPHATE, SULFATE ION
Authors:Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-08-22
Release date:2008-09-09
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
2ZR3
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CRYSTAL STRUCTURE OF SERYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII
Descriptor:Seryl-tRNA synthetase
Authors:Itoh, Y., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-08-22
Release date:2008-09-09
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.
Rna Biol., 5, 2008
3A3A
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CRYSTAL STRUCTURE OF HUMAN SELENOCYSTINE TRNA
Descriptor:selenocysteine tRNA
Authors:Itoh, Y., Chiba, S., Sekine, S.I., Yokoyama, S.
Deposit date:2009-06-11
Release date:2009-08-11
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of human selenocysteine tRNA.
Nucleic Acids Res., 37, 2009
3W1H
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CRYSTAL STRUCTURE OF THE SELENOCYSTEINE SYNTHASE SELA FROM AQUIFEX AEOLICUS
Descriptor:L-seryl-tRNA(Sec) selenium transferase
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Method:X-RAY DIFFRACTION (3.893 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1I
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CRYSTAL STRUCTURE OF THE N-TERMINAL TRUNCATED SELENOCYSTEINE SYNTHASE SELA
Descriptor:L-seryl-tRNA(Sec) selenium transferase, PLATINUM (II) ION, POTASSIUM ION
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.192 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1J
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CRYSTAL STRUCTURE OF THE N-TERMINAL TRUNCATED SELENOCYSTEINE SYNTHASE SELA IN COMPLEX WITH THIOSULFATE
Descriptor:L-seryl-tRNA(Sec) selenium transferase, POTASSIUM ION, THIOSULFATE
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.252 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W1K
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CRYSTAL STRUCTURE OF THE SELENOCYSTEINE SYNTHASE SELA AND TRNASEC COMPLEX
Descriptor:L-seryl-tRNA(Sec) selenium transferase, selenocysteine tRNA
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2012-11-15
Release date:2013-06-05
Method:X-RAY DIFFRACTION (7.5 Å)
Cite:Decameric SelA-tRNA(Sec) ring structure reveals mechanism of bacterial selenocysteine formation
Science, 340, 2013
3W3S
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CRYSTAL STRUCTURE OF A. AEOLICUS TRNASEC IN COMPLEX WITH M. KANDLERI SERRS
Descriptor:Type-2 serine--tRNA ligase, selenocysteine tRNA, ZINC ION, ...
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2012-12-27
Release date:2013-02-13
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (3.095 Å)
Cite:Tertiary structure of bacterial selenocysteine tRNA
Nucleic Acids Res., 41, 2013
3WCN
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CRYSTAL STRUCTURE OF THE DEPENTAMERIZED MUTANT OF SELENOCYSTEINE SYNTHASE SELA
Descriptor:L-seryl-tRNA(Sec) selenium transferase, THIOSULFATE
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2013-05-29
Release date:2014-01-22
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Dimer-Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity
J.Mol.Biol., 426, 2014
3WCO
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CRYSTAL STRUCTURE OF THE DEPENTAMERIZED MUTANT OF N-TERMINAL TRUNCATED SELENOCYSTEINE SYNTHASE SELA
Descriptor:L-seryl-tRNA(Sec) selenium transferase, THIOSULFATE
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2013-05-29
Release date:2014-01-22
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dimer-Dimer Interaction of the Bacterial Selenocysteine Synthase SelA Promotes Functional Active-Site Formation and Catalytic Specificity
J.Mol.Biol., 426, 2014
4ZU9
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CRYSTAL STRUCTURE OF BACTERIAL SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR EF-SEC
Descriptor:Elongation factor SelB, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ...
Authors:Itoh, Y., Sekine, S., Yokoyama, S.
Deposit date:2015-05-15
Release date:2015-09-23
Last modified:2015-10-28
Method:X-RAY DIFFRACTION (3.191 Å)
Cite:Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB
Nucleic Acids Res., 43, 2015
3W9F
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CRYSTAL STRUCTURE OF THE ANKILIN REPEAT DOMAIN OF CHICKEN TRPV4 IN COMPLEX WITH IP3
Descriptor:Vanilloid receptor-related osmotically activated channel protein, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
Authors:Itoh, Y., Hamada-nakahara, S., Suetsugu, S.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2014-10-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
3W9G
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CRYSTAL STRUCTURE OF THE ANKILIN REPEAT DOMAIN OF CHICKEN TRPV4
Descriptor:Vanilloid receptor-related osmotically activated channel protein
Authors:Itoh, Y., Hamada-nakahara, S., Suetsugu, S.
Deposit date:2013-04-04
Release date:2014-04-09
Last modified:2014-10-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2
Nat Commun, 5, 2014
3ADB
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CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 1)
Descriptor:L-seryl-tRNA(Sec) kinase, selenocysteine tRNA, PHOSPHATE ION, ...
Authors:Itoh, Y., Chiba, S., Sekine, S., Yokoyama, S.
Deposit date:2010-01-18
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3ADC
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CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 2)
Descriptor:L-seryl-tRNA(Sec) kinase, selenocysteine tRNA, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Itoh, Y., Chiba, S., Sekine, S., Yokoyama, S.
Deposit date:2010-01-18
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3ADD
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CRYSTAL STRUCTURE OF O-PHOSPHOSERYL-TRNA KINASE COMPLEXED WITH SELENOCYSTEINE TRNA AND AMPPNP (CRYSTAL TYPE 3)
Descriptor:L-seryl-tRNA(Sec) kinase, selenocysteine tRNA, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Itoh, Y., Chiba, S., Sekine, S., Yokoyama, S.
Deposit date:2010-01-18
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
6HZ4
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STRUCTURE OF MCRBC WITHOUT DNA BINDING DOMAINS (ONE HALF OF THE FULL COMPLEX)
Descriptor:5-methylcytosine-specific restriction enzyme B, Protein McrC, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Itoh, Y., Nirwan, N., Saikrishnan, K., Amunts, A.
Deposit date:2018-10-22
Release date:2019-07-24
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun, 10, 2019
6HZ5
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STRUCTURE OF MCRBC WITHOUT DNA BINDING DOMAINS (CLASS 1)
Descriptor:5-methylcytosine-specific restriction enzyme B, Protein McrC, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Itoh, Y., Nirwan, N., Saikrishnan, K., Amunts, A.
Deposit date:2018-10-22
Release date:2019-07-24
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun, 10, 2019
6HZ6
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STRUCTURE OF MCRBC WITHOUT DNA BINDING DOMAINS (CLASS 2)
Descriptor:5-methylcytosine-specific restriction enzyme B, Protein McrC, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Itoh, Y., Nirwan, N., Saikrishnan, K., Amunts, A.
Deposit date:2018-10-22
Release date:2019-07-24
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun, 10, 2019
6HZ7
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STRUCTURE OF MCRBC WITHOUT DNA BINDING DOMAINS (CLASS 3)
Descriptor:5-methylcytosine-specific restriction enzyme B, Protein McrC, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Itoh, Y., Nirwan, N., Saikrishnan, K., Amunts, A.
Deposit date:2018-10-22
Release date:2019-07-24
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun, 10, 2019
6HZ8
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STRUCTURE OF MCRBC WITHOUT DNA BINDING DOMAINS (CLASS 4)
Descriptor:5-methylcytosine-specific restriction enzyme B, Protein McrC, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Itoh, Y., Nirwan, N., Saikrishnan, K., Amunts, A.
Deposit date:2018-10-22
Release date:2019-07-24
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun, 10, 2019
6HZ9
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STRUCTURE OF MCRBC WITHOUT DNA BINDING DOMAINS (CLASS 5)
Descriptor:5-methylcytosine-specific restriction enzyme B, Protein McrC, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Itoh, Y., Nirwan, N., Saikrishnan, K., Amunts, A.
Deposit date:2018-10-22
Release date:2019-07-24
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nat Commun, 10, 2019
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