Author results

1IQW
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CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF THE MOUSE ANTI-HUMAN FAS ANTIBODY HFE7A
Descriptor:ANTIBODY M-HFE7A, LIGHT CHAIN, HEAVY CHAIN
Authors:Ito, S., Takayama, T., Hanzawa, H., Ichikawa, K., Ohsumi, J., Serizawa, N., Hata, T., Haruyama, H.
Deposit date:2001-08-10
Release date:2002-01-23
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the antigen-binding fragment of apoptosis-inducing mouse anti-human Fas monoclonal antibody HFE7A.
J.Biochem.(Tokyo), 131, 2002
1GC5
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CRYSTAL STRUCTURE OF A NOVEL ADP-DEPENDENT GLUCOKINASE FROM THERMOCOCCUS LITORALIS
Descriptor:ADP-DEPENDENT GLUCOKINASE, ADENOSINE-5'-DIPHOSPHATE
Authors:Ito, S., Fushinobu, S., Yoshioka, I., Koga, S., Matsuzawa, H., Wakagi, T.
Deposit date:2000-07-20
Release date:2001-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis for the ADP-Specificity of a Novel Glucokinase from a Hyperthermophilic Archaeon
Structure, 9, 2001
1IQA
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CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF MOUSE RANK LIGAND
Descriptor:RECEPTOR ACTIVATOR OF NUCLEAR FACTOR KAPPA B LIGAND
Authors:Ito, S., Wakabayashi, K., Ubukata, O., Hayashi, S., Okada, F., Hata, T.
Deposit date:2001-07-11
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the extracellular domain of mouse RANK ligand at 2.2-A resolution.
J.Biol.Chem., 277, 2002
1UA4
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CRYSTAL STRUCTURE OF AN ADP-DEPENDENT GLUCOKINASE FROM PYROCOCCUS FURIOSUS
Descriptor:ADP-dependent glucokinase, ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, ...
Authors:Ito, S., Jeong, J.J., Yoshioka, I., Koga, S., Fushinobu, S., Shoun, H., Wakagi, T.
Deposit date:2003-02-27
Release date:2004-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an ADP-dependent glucokinase from Pyrococcus furiosus: implications for a sugar-induced conformational change in ADP-dependent kinase
J.Mol.Biol., 331, 2003
2Z7U
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CRYSTAL STRUCTURE OF H2O2 TREATED CU,ZN-SOD
Descriptor:Superoxide dismutase [Cu-Zn], ZINC ION, COPPER (II) ION
Authors:Ito, S., Ishii, T., Uchida, K.
Deposit date:2007-08-28
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2Z7W
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CRYSTAL STRUCTURE OF H2O2 TREATED CU,ZN-SOD
Descriptor:Superoxide dismutase [Cu-Zn], ZINC ION, COPPER (II) ION
Authors:Ito, S., Ishii, T., Uchida, K.
Deposit date:2007-08-29
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2Z7Y
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CRYSTAL STRUCTURE OF H2O2 TREATED CU,ZN-SOD
Descriptor:Superoxide dismutase [Cu-Zn], ZINC ION, COPPER (II) ION
Authors:Ito, S., Ishii, T., Uchida, K.
Deposit date:2007-08-30
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2Z7Z
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CRYSTAL STRUCTURE OF H2O2 TREATED CU,ZN-SOD
Descriptor:Superoxide dismutase [Cu-Zn], ZINC ION, COPPER (II) ION
Authors:Ito, S., Ishii, T., Uchida, K.
Deposit date:2007-08-30
Release date:2008-09-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
2ZOW
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CRYSTAL STRUCTURE OF H2O2 TREATED CU,ZN-SOD
Descriptor:Superoxide dismutase [Cu-Zn], ZINC ION, COPPER (I) ION
Authors:Ito, S., Ishii, T., Sakai, H., Uchida, K.
Deposit date:2008-06-11
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structures of H2O2-treated Cu,Zn-superoxide dismutase
To be Published
1IT9
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CRYSTAL STRUCTURE OF AN ANTIGEN-BINDING FRAGMENT FROM A HUMANIZED VERSION OF THE ANTI-HUMAN FAS ANTIBODY HFE7A
Descriptor:HUMANIZED ANTIBODY HFE7A, LIGHT CHAIN, HEAVY CHAIN
Authors:Ito, S., Takayama, T., Hanzawa, H., Takahashi, T., Miyadai, K., Serizawa, N., Hata, T., Haruyama, H.
Deposit date:2002-01-11
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Humanization of the Mouse Anti-Fas Antibody HFE7A and Crystal Structure of the Humanized HFE7A Fab Fragment
BIOL.PHARM.BULL., 25, 2002
2DDQ
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CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF A R310 ANTIBODY COMPLEXED WITH (R)-HNE-HISTIDINE ADDUCT
Descriptor:R310 antibody heavy chain, R310 antibody light chain, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Ito, S.
Deposit date:2006-02-02
Release date:2006-07-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Bispecific abs against modified protein and DNA with oxidized lipids
Proc.Natl.Acad.Sci.Usa, 103, 2006
3A73
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CRYSTAL STRUCTURE ANALYSIS OF HUMAN SERUM ALBUMIN COMPLEXED WITH DELTA 12-PROSTAGLANDIN J2
Descriptor:Serum albumin, MYRISTIC ACID, (5Z,12Z,15S)-15-hydroxy-11-oxoprosta-5,9,12-trien-1-oic acid
Authors:Ito, S.
Deposit date:2009-09-11
Release date:2010-01-19
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Delta12-prostaglandin J2 as a product and ligand of human serum albumin: formation of an unusual covalent adduct at His146.
J.Am.Chem.Soc., 132, 2010
3A5J
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CRYSTAL STRUCTURE OF PROTEIN-TYROSINE PHOSPHATASE 1B
Descriptor:Tyrosine-protein phosphatase non-receptor type 1, MAGNESIUM ION
Authors:Ito, S.
Deposit date:2009-08-08
Release date:2010-08-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Post-translational modification of a non-catalytic Cys121 of PTP1B
To be Published
3A5K
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CRYSTAL STRUCTURE OF PROTEIN-TYROSINE PHOSPHATASE 1B
Descriptor:Tyrosine-protein phosphatase non-receptor type 1, MAGNESIUM ION
Authors:Ito, S.
Deposit date:2009-08-08
Release date:2010-08-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Post-translational modification of a non-catalytic Cys121 of PTP1B
To be Published
2YX0
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CRYSTAL STRUCTURE OF P. HORIKOSHII TYW1
Descriptor:radical sam enzyme
Authors:Goto-Ito, S., Ishii, R., Ito, T., Shibata, R., Fusatomi, E., Sekine, S., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-23
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis
Acta Crystallogr.,Sect.D, 63, 2007
2YX1
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CRYSTAL STRUCTURE OF M.JANNASCHII TRNA M1G37 METHYLTRANSFERASE
Descriptor:Hypothetical protein MJ0883, ZINC ION, SINEFUNGIN
Authors:Goto-Ito, S., Ito, T., Ishii, R., Bessho, Y., Yokoyama, S.
Deposit date:2007-04-23
Release date:2008-04-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of archaeal tRNA(m(1)G37)methyltransferase aTrm5.
Proteins, 72, 2008
2ZZM
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THE COMPLEX STRUCTURE OF ATRM5 AND TRNALEU
Descriptor:Uncharacterized protein MJ0883, RNA (84-MER), S-ADENOSYLMETHIONINE, ...
Authors:Goto-Ito, S., Ito, T., Yokoyama, S.
Deposit date:2009-02-19
Release date:2009-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation
Nat.Struct.Mol.Biol., 16, 2009
2ZZN
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THE COMPLEX STRUCTURE OF ATRM5 AND TRNACYS
Descriptor:Uncharacterized protein MJ0883, RNA (71-MER), S-ADENOSYLMETHIONINE, ...
Authors:Goto-Ito, S., Ito, T., Yokoyama, S.
Deposit date:2009-02-19
Release date:2009-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation.
Nat.Struct.Mol.Biol., 16, 2009
3AIB
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CRYSTAL STRUCTURE OF GLUCANSUCRASE
Descriptor:Glucosyltransferase-SI, CALCIUM ION, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Ito, K., Ito, S., Shimamura, T., Iwata, S.
Deposit date:2010-05-12
Release date:2011-03-23
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans.
J.Mol.Biol., 408, 2011
3AIC
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CRYSTAL STRUCTURE OF GLUCANSUCRASE FROM STREPTOCOCCUS MUTANS
Descriptor:Glucosyltransferase-SI, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Ito, K., Ito, S., Shimamura, T., Iwata, S.
Deposit date:2010-05-12
Release date:2011-03-23
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans.
J.Mol.Biol., 408, 2011
3AIE
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CRYSTAL STRUCTURE OF GLUCANSUCRASE FROM STREPTOCOCCUS MUTANS
Descriptor:Glucosyltransferase-SI, CALCIUM ION, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Ito, K., Ito, S., Shimamura, T., Iwata, S.
Deposit date:2010-05-12
Release date:2011-03-23
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans.
J.Mol.Biol., 408, 2011
3AXZ
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CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE TRMD IN COMPLEX WITH ADENOSINE
Descriptor:tRNA (guanine-N(1)-)-methyltransferase, ADENOSINE
Authors:Yoshida, K., Goto-Ito, S., Ito, T., Hou, Y.M., Yokoyama, S.
Deposit date:2011-04-21
Release date:2011-08-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Differentiating analogous tRNA methyltransferases by fragments of the methyl donor.
Rna, 17, 2011
3AY0
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CRYSTAL STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII TRM5 IN COMPLEX WITH ADENOSINE
Descriptor:Uncharacterized protein MJ0883, ZINC ION, ADENOSINE
Authors:Goto-Ito, S., Ito, T., Hou, Y.M., Yokoyama, S.
Deposit date:2011-04-21
Release date:2011-08-17
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Differentiating analogous tRNA methyltransferases by fragments of the methyl donor.
Rna, 17, 2011
3VRH
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CRYSTAL STRUCTURE OF PH0300
Descriptor:Putative uncharacterized protein PH0300, ZINC ION, BICINE
Authors:Nakagawa, H., Kuratani, M., Goto-Ito, S., Ito, T., Sekine, S.I., Yokoyama, S.
Deposit date:2012-04-10
Release date:2013-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA.
Proteins, 2013
5ZQU
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CRYSTAL STRUCTURE OF TETRAMERIC RXRALPHA-LBD COMPLEXED WITH PARTIAL AGONIST CBT-PMN
Descriptor:Retinoic acid receptor RXR-alpha, 1-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)benzotriazole-5-carboxylic acid, BROMIDE ION
Authors:Miyashita, Y., Numoto, N., Arulmozhiraja, S., Nakano, S., Matsuo, N., Shimizu, K., Kakuta, H., Ito, S., Ikura, T., Ito, N., Tokiwa, H.
Deposit date:2018-04-20
Release date:2019-02-27
Method:X-RAY DIFFRACTION (2.600388 Å)
Cite:Dual conformation of the ligand induces the partial agonistic activity of retinoid X receptor alpha (RXR alpha ).
FEBS Lett., 593, 2019