Author results

1AUG
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CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS AMYLOLIQUEFACIENS
Descriptor:PYROGLUTAMYL PEPTIDASE-1
Authors:Odagaki, Y., Hayashi, A., Okada, K., Hirotsu, K., Kabashima, T., Ito, K., Yoshimoto, T., Tsuru, D., Sato, M., Clardy, J.
Deposit date:1997-08-26
Release date:1999-03-23
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of pyroglutamyl peptidase I from Bacillus amyloliquefaciens reveals a new structure for a cysteine protease.
Structure Fold.Des., 7, 1999
1BK1
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ENDO-1,4-BETA-XYLANASE C
Descriptor:ENDO-1,4-B-XYLANASE C
Authors:Fushinobu, S., Ito, K., Konno, M., Wakagi, T., Matsuzawa, H.
Deposit date:1998-07-14
Release date:1999-01-13
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH.
Protein Eng., 11, 1998
1QTR
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CRYSTAL STRUCTURE ANALYSIS OF THE PROLYL AMINOPEPTIDASE FROM SERRATIA MARCESCENS
Descriptor:PROLYL AMINOPEPTIDASE (E.C.3.4.11.5)
Authors:Yoshimoto, T., Kabashima, T., Uchikawa, K., Inoue, T., Tanaka, N.
Deposit date:1999-06-28
Release date:1999-07-07
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of prolyl aminopeptidase from Serratia marcescens.
J.Biochem.(Tokyo), 126, 1999
1D5M
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X-RAY CRYSTAL STRUCTURE OF HLA-DR4 COMPLEXED WITH PEPTIDE AND SEB
Descriptor:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN
Authors:Swain, A.L., Crowther, R., Kammlott, U.
Deposit date:1999-10-07
Release date:2000-06-28
Last modified:2011-07-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures.
J.Med.Chem., 43, 2000
1D5X
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X-RAY CRYSTAL STRUCTURE OF HLA-DR4 COMPLEXED WITH DIPEPTIDE MIMETIC AND SEB
Descriptor:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN/HLA CLASS II HISTOCOMPATIBILITY ANTIGEN/ENTEROTOXIN TYPE B
Authors:Swain, A., Crowther, R., Kammlott, U.
Deposit date:1999-10-12
Release date:2000-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures.
J.Med.Chem., 43, 2000
1D5Z
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X-RAY CRYSTAL STRUCTURE OF HLA-DR4 COMPLEXED WITH PEPTIDOMIMETIC AND SEB
Descriptor:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN/HLA CLASS II HISTOCOMPATIBILITY ANTIGEN/ENTEROTOXIN TYPE B/PEPTIDE INHIBITOR
Authors:Swain, A., Crowther, R., Kammlott, U.
Deposit date:1999-10-12
Release date:2000-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures.
J.Med.Chem., 43, 2000
1D6E
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CRYSTAL STRUCTURE OF HLA-DR4 COMPLEX WITH PEPTIDOMIMETIC AND SEB
Descriptor:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN/HLA CLASS II HISTOCOMPATIBILITY ANTIGEN/ENTEROTOXIN TYPE B/PEPTIDOMIMETIC INHIBITOR
Authors:Swain, A., Crowther, R., Kammlott, U.
Deposit date:1999-10-13
Release date:2000-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Peptide and peptide mimetic inhibitors of antigen presentation by HLA-DR class II MHC molecules. Design, structure-activity relationships, and X-ray crystal structures.
J.Med.Chem., 43, 2000
1EH1
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RIBOSOME RECYCLING FACTOR FROM THERMUS THERMOPHILUS
Descriptor:RIBOSOME RECYCLING FACTOR
Authors:Toyoda, T., Tin, O.F., Ito, K., Fujiwara, T., Kumasaka, T., Yamamoto, M., Garber, M.B., Nakamura, Y.
Deposit date:2000-02-18
Release date:2000-11-15
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure combined with genetic analysis of the Thermus thermophilus ribosome recycling factor shows that a flexible hinge may act as a functional switch.
RNA, 6, 2000
1IRE
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CRYSTAL STRUCTURE OF CO-TYPE NITRILE HYDRATASE FROM PSEUDONOCARDIA THERMOPHILA
Descriptor:Nitrile Hydratase(E.C.4.2.1.84)
Authors:Miyanaga, A., Fushinobu, S., Ito, K., Wakagi, T.
Deposit date:2001-10-01
Release date:2002-10-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of cobalt-containing nitrile hydratase.
Biochem.Biophys.Res.Commun., 288, 2001
1KOL
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CRYSTAL STRUCTURE OF FORMALDEHYDE DEHYDROGENASE
Descriptor:formaldehyde dehydrogenase(E.C.1.2.1.46)/ NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Tanaka, N., Kusakabe, Y., Ito, K., Yoshimoto, T., Nakamura, K.T.
Deposit date:2001-12-21
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of Formaldehyde Dehydrogenase from Pseudomonas putida: the Structural Origin of the Tightly Bound Cofactor in Nicotinoprotein Dehydrogenases
J.mol.biol., 324, 2002
1J2T
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CREATININASE MN
Descriptor:creatinine amidohydrolase(E.C.3.5.2.10)
Authors:Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.
Deposit date:2003-01-11
Release date:2004-01-27
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1J2U
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CREATININASE ZN
Descriptor:creatinine amidohydrolase(E.C.3.5.2.10)
Authors:Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.
Deposit date:2003-01-11
Release date:2004-01-27
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1UGP
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CRYSTAL STRUCTURE OF CO-TYPE NITRILE HYDRATASE COMPLEXED WITH N-BUTYRIC ACID
Descriptor:Nitrile Hydratase alpha subunit(E.C.4.2.1.84)/Nitrile Hydratase beta subunit(E.C.4.2.1.84)
Authors:Miyanaga, A., Fushinobu, S., Ito, K., Shoun, H., Wakagi, T.
Deposit date:2003-06-17
Release date:2004-06-17
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding
Eur.J.Biochem., 271, 2004
1UGQ
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CRYSTAL STRUCTURE OF APOENZYME OF CO-TYPE NITRILE HYDRATASE
Descriptor:Nitrile Hydratase alpha subunit(E.C.4.2.1.84)/Nitrile Hydratase beta subunit(E.C.4.2.1.84)
Authors:Miyanaga, A., Fushinobu, S., Ito, K., Shoun, H., Wakagi, T.
Deposit date:2003-06-17
Release date:2004-06-17
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding
Eur.J.Biochem., 271, 2004
1UGR
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CRYSTAL STRUCTURE OF AT109S MUTANT OF CO-TYPE NITRILE HYDRATASE
Descriptor:Nitrile Hydratase alpha subunit(E.C.4.2.1.84)/Nitrile Hydratase beta subunit(E.C.4.2.1.84)
Authors:Miyanaga, A., Fushinobu, S., Ito, K., Shoun, H., Wakagi, T.
Deposit date:2003-06-17
Release date:2004-06-17
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding
Eur.J.Biochem., 271, 2004
1UGS
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CRYSTAL STRUCTURE OF AY114T MUTANT OF CO-TYPE NITRILE HYDRATASE
Descriptor:Nitrile Hydratase alpha subunit(E.C.4.2.1.84)/Nitrile Hydratase beta subunit(E.C.4.2.1.84)
Authors:Miyanaga, A., Fushinobu, S., Ito, K., Shoun, H., Wakagi, T.
Deposit date:2003-06-17
Release date:2004-06-17
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding
Eur.J.Biochem., 271, 2004
1R5B
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CRYSTAL STRUCTURE ANALYSIS OF SUP35
Descriptor:Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Kong, C., Song, H.
Deposit date:2003-10-10
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe
Mol.Cell, 14, 2004
1R5N
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CRYSTAL STRUCTURE ANALYSIS OF SUP35 COMPLEXED WITH GDP
Descriptor:Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Kong, C., Song, H.
Deposit date:2003-10-10
Release date:2004-05-25
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe
Mol.Cell, 14, 2004
1R5O
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CRYSTAL STRUCTURE ANALYSIS OF SUP35 COMPLEXED WITH GMPPNP
Descriptor:Eukaryotic peptide chain release factor GTP-binding subunit
Authors:Kong, C., Song, H.
Deposit date:2003-10-11
Release date:2004-05-25
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe
Mol.Cell, 14, 2004
1V3Y
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THE CRYSTAL STRUCTURE OF PEPTIDE DEFORMYLASE FROM THERMUS THERMOPHILUS HB8
Descriptor:Peptide deformylase(E.C.3.5.1.88)
Authors:Kamo, M., Kudo, N., Lee, W.C., Ito, K., Motoshim, H., Tanokura, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-07
Release date:2004-12-28
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:The crystal structure of peptide deformylase from Thermus thermophilus HB8
to be published
1V4B
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THE CRYSTAL STRUCTURE OF AZOR (AZO REDUCTASE) FROM ESCHERICHIA COLI: OXIDIZED FORM
Descriptor:Azo Reductase (E.C.1.7.1.6)
Authors:Ito, K., Tanokura, M.
Deposit date:2003-11-12
Release date:2005-01-18
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms
J.Biol.Chem., 281, 2006
1V7Z
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CREATININASE-PRODUCT COMPLEX
Descriptor:creatinine amidohydrolase(E.C.3.5.2.10)
Authors:Yoshimoto, T., Tanaka, N., Kanada, N., Inoue, T., Nakajima, Y., Haratake, M., Nakamura, K.T., Xu, Y., Ito, K.
Deposit date:2003-12-26
Release date:2004-01-27
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1WM1
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CRYSTAL STRUCTURE OF PROLYL AMINOPEPTIDASE, COMPLEX WITH PRO-TBODA
Descriptor:Proline iminopeptidase(E.C.3.4.11.5)
Authors:Nakajima, Y., Inoue, T., Ito, K., Tozaka, T., Hatakeyama, S., Tanaka, N., Nakamura, K.T., Yoshimoto, T.
Deposit date:2004-07-01
Release date:2004-07-20
Last modified:2009-02-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Novel inhibitor for prolyl aminopeptidase from Serratia marcescens and studies on the mechanism of substrate recognition of the enzyme using the inhibitor
ARCH.BIOCHEM.BIOPHYS., 416, 2003
1WMB
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CRYSTAL STRUCTURE OF NAD DEPENDENT D-3-HYDROXYBUTYLATE DEHYDROGENASE
Descriptor:3-hydroxybutyrate dehydrogenase (E.C.1.1.1.30)
Authors:Ito, K., Nakajima, Y., Ichihara, E., Ogawa, K., Yoshimoto, T.
Deposit date:2004-07-06
Release date:2005-09-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:d-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme
J.Mol.Biol., 355, 2006
1X1T
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CRYSTAL STRUCTURE OF D-3-HYDROXYBUTYRATE DEHYDROGENASE FROM PSEUDOMONAS FRAGI COMPLEXED WITH NAD+
Descriptor:D(-)-3-hydroxybutyrate dehydrogenase (E.C.1.1.1.30)
Authors:Ito, K., Nakajima, Y., Ichihara, E., Ogawa, K., Yoshimoto, T.
Deposit date:2005-04-13
Release date:2006-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:d-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme
J.Mol.Biol., 355, 2006
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