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3AIB
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CRYSTAL STRUCTURE OF GLUCANSUCRASE
Descriptor:Glucosyltransferase-SI (E.C.2.4.1.5)
Authors:Ito, K., Ito, S., Shimamura, T., Iwata, S.
Deposit date:2010-05-12
Release date:2011-03-23
Modification date:2013-08-07
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans.
J.Mol.Biol., 408, 2011
3AIC
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CRYSTAL STRUCTURE OF GLUCANSUCRASE FROM STREPTOCOCCUS MUTANS
Descriptor:Glucosyltransferase-SI (E.C.2.4.1.5)
Authors:Ito, K., Ito, S., Shimamura, T., Iwata, S.
Deposit date:2010-05-12
Release date:2011-03-23
Modification date:2013-08-07
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans.
J.Mol.Biol., 408, 2011
3AIE
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CRYSTAL STRUCTURE OF GLUCANSUCRASE FROM STREPTOCOCCUS MUTANS
Descriptor:Glucosyltransferase-SI (E.C.2.4.1.5)
Authors:Ito, K., Ito, S., Shimamura, T., Iwata, S.
Deposit date:2010-05-12
Release date:2011-03-23
Modification date:2013-08-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of glucansucrase from the dental caries pathogen Streptococcus mutans.
J.Mol.Biol., 408, 2011
1WMB
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CRYSTAL STRUCTURE OF NAD DEPENDENT D-3-HYDROXYBUTYLATE DEHYDROGENASE
Descriptor:3-hydroxybutyrate dehydrogenase (E.C.1.1.1.30)
Authors:Ito, K., Nakajima, Y., Ichihara, E., Ogawa, K., Yoshimoto, T.
Deposit date:2004-07-06
Release date:2005-09-06
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:d-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme
J.Mol.Biol., 355, 2006
1X1T
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CRYSTAL STRUCTURE OF D-3-HYDROXYBUTYRATE DEHYDROGENASE FROM PSEUDOMONAS FRAGI COMPLEXED WITH NAD+
Descriptor:D(-)-3-hydroxybutyrate dehydrogenase (E.C.1.1.1.30)
Authors:Ito, K., Nakajima, Y., Ichihara, E., Ogawa, K., Yoshimoto, T.
Deposit date:2005-04-13
Release date:2006-01-10
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:d-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme
J.Mol.Biol., 355, 2006
1V4B
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THE CRYSTAL STRUCTURE OF AZOR (AZO REDUCTASE) FROM ESCHERICHIA COLI: OXIDIZED FORM
Descriptor:Azo Reductase (E.C.1.7.1.6)
Authors:Ito, K., Tanokura, M.
Deposit date:2003-11-12
Release date:2005-01-18
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms
J.Biol.Chem., 281, 2006
2D5I
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THE CRYSTAL STRUCTURE OF AZOR (AZO REDUCTASE) FROM ESCHERICHIA COLI
Descriptor:Azo Reductase
Authors:Ito, K., Tanokura, M.
Deposit date:2005-11-02
Release date:2006-05-16
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms
J.Biol.Chem., 281, 2006
2Z98
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THE CRYSTAL STRUCTURE OF AZOR (AZOREDUCTASE) FROM ESCHERICHIA COLI: OXIDIZED AZOR IN TETRAGONAL CRYSTALS (THE RESOLUTION HAS IMPROVED FROM 1.8 (1V4B) TO 1.4 ANGSTROM)
Descriptor:FMN-dependent NADH-azoreductase (E.C.1.7.1.6)
Authors:Ito, K.
Deposit date:2007-09-18
Release date:2008-03-11
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Expansion of Substrate Specificity and Catalytic Mechanism of Azoreductase by X-ray Crystallography and Site-directed Mutagenesis
J.Biol.Chem., 283, 2008
2Z9B
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THE CRYSTAL STRUCTURE OF AZOR (AZOREDUCTASE) FROM ESCHERICHIA COLI: REDUCED AZOR IN TETRAGONAL CRYSTALS
Descriptor:FMN-dependent NADH-azoreductase (E.C.1.7.1.6)
Authors:Ito, K.
Deposit date:2007-09-18
Release date:2008-03-11
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Expansion of Substrate Specificity and Catalytic Mechanism of Azoreductase by X-ray Crystallography and Site-directed Mutagenesis
J.Biol.Chem., 283, 2008
2Z9C
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THE CRYSTAL STRUCTURE OF AZOR (AZOREDUCTASE) FROM ESCHERICHIA COLI: AZOR IN COMPLEX WITH DICOUMAROL
Descriptor:FMN-dependent NADH-azoreductase (E.C.1.7.1.6)
Authors:Ito, K.
Deposit date:2007-09-18
Release date:2008-03-11
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Expansion of Substrate Specificity and Catalytic Mechanism of Azoreductase by X-ray Crystallography and Site-directed Mutagenesis
J.Biol.Chem., 283, 2008
2Z9D
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THE CRYSTAL STRUCTURE OF AZOR (AZOREDUCTASE) FROM ESCHERICHIA COLI: OXIDIZED AZOR IN ORTHORHOMBIC CRYSTALS
Descriptor:FMN-dependent NADH-azoreductase (E.C.1.7.1.6)
Authors:Ito, K.
Deposit date:2007-09-18
Release date:2008-03-11
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Expansion of Substrate Specificity and Catalytic Mechanism of Azoreductase by X-ray Crystallography and Site-directed Mutagenesis
J.Biol.Chem., 283, 2008
3VJR
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CRYSTAL STRUCTURE OF PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHIA COLI IN COMPLEX WITH THE CCA-ACCEPTOR-T[PSI]C DOMAIN OF TRNA
Descriptor:Peptidyl-tRNA hydrolase (E.C.3.1.1.29)
Authors:Ito, K., Murakami, R., Mochizuki, M., Qi, H., Shimizu, Y., Miura, K.I., Ueda, T., Uchiumi, T.
Deposit date:2011-10-28
Release date:2012-09-12
Modification date:2013-06-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.
Nucleic Acids Res., 40, 2012
2CWQ
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CRYSTAL STRUCTURE OF CONSERVED PROTEIN TTHA0727 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA0727
Authors:Ito, K., Arai, R., Fusatomi, E., Kamo-Uchikubo, T., Kawaguchi, S., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-23
Release date:2005-12-23
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
Protein Sci., 15, 2006
2CYJ
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CRYSTAL STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN PH1505 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:hypothetical protein PH1505
Authors:Ito, K., Arai, R., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-07
Release date:2006-01-07
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3
To be Published
2CZC
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CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Glyceraldehyde-3-phosphate dehydrogenase (E.C.1.2.1.59)
Authors:Ito, K., Arai, R., Kamo-Uchikubo, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-01-13
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Pyrococcus horikoshii OT3
To be Published
2CZF
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CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE FROM PYROCOCCUS HORIKOSHII OT3 COMPLEXED WITH XMP
Descriptor:Orotidine 5'-phosphate decarboxylase (E.C.4.1.1.23)
Authors:Ito, K., Arai, R., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-01-13
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with XMP
To be Published
3WY9
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CRYSTAL STRUCTURE OF A COMPLEX OF THE ARCHAEAL RIBOSOMAL STALK PROTEIN AP1 AND THE GDP-BOUND ARCHAEAL ELONGATION FACTOR AEF1ALPHA
Descriptor:Elongation factor 1-alpha, 50S ribosomal protein L12
Authors:Ito, K., Honda, T., Suzuki, T., Miyoshi, T., Murakami, R., Yao, M., Uchiumi, T.
Deposit date:2014-08-22
Release date:2014-12-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1 alpha
Nucleic Acids Res., 2014
3WYA
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CRYSTAL STRUCTURE OF GDP-BOUND EF1ALPHA FROM PYROCOCCUS HORIKOSHII
Descriptor:Elongation factor 1-alpha
Authors:Ito, K., Honda, T., Suzuki, T., Miyoshi, T., Murakami, R., Yao, M., Uchiumi, T.
Deposit date:2014-08-22
Release date:2014-12-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1 alpha
Nucleic Acids Res., 2014
2D5L
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CRYSTAL STRUCTURE OF PROLYL TRIPEPTIDYL AMINOPEPTIDASE FROM PORPHYROMONAS GINGIVALIS
Descriptor:dipeptidyl aminopeptidase IV, putative(E.C.3.4.14.-)
Authors:Nakajima, Y., Ito, K., Xu, Y., Yamada, N., Onohara, Y., Yoshimoto, T.
Deposit date:2005-11-02
Release date:2006-09-19
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
J.Mol.Biol., 362, 2006
2DCM
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THE CRYSTAL STRUCTURE OF S603A MUTATED PROLYL TRIPEPTIDYL AMINOPEPTIDASE COMPLEXED WITH SUBSTRATE
Descriptor:dipeptidyl aminopeptidase IV, putative (E.C.3.4.14.-)
Authors:Nakajima, Y., Ito, K., Xu, Y., Yamada, N., Onohara, Y., Yoshimoto, T.
Deposit date:2006-01-09
Release date:2006-09-19
Modification date:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis
J.Mol.Biol., 362, 2006
2DQ6
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CRYSTAL STRUCTURE OF AMINOPEPTIDASE N FROM ESCHERICHIA COLI
Descriptor:Aminopeptidase N (E.C.3.4.11.2)
Authors:Nakajima, Y., Onohara, Y., Ito, K., Yoshimoto, T.
Deposit date:2006-05-22
Release date:2006-08-01
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
2DQM
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CRYSTAL STRUCTURE OF AMINOPEPTIDASE N COMPLEXED WITH BESTATIN
Descriptor:Aminopeptidase N (E.C.3.4.11.2)
Authors:Onohara, Y., Nakajima, Y., Ito, K., Yoshimoto, T.
Deposit date:2006-05-29
Release date:2006-08-01
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Aminopeptidase N (proteobacteria alanyl aminopeptidase) from Escherichia coli: Crystal structure and conformational change of the methionine 260 residue involved in substrate recognition
J.Biol.Chem., 281, 2006
2CZH
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CRYSTAL STRUCTURE OF HUMAN MYO-INOSITOL MONOPHOSPHATASE 2 (IMPA2) WITH PHOSPHATE ION (ORTHORHOMBIC FORM)
Descriptor:Inositol monophosphatase 2 (E.C.3.1.3.25)
Authors:Ito, K., Arai, R., Kamo-Uchikubo, T., Ohnishi, T., Ohba, H., Yoshikawa, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-13
Release date:2006-07-25
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of human myo-inositol monophosphatase 2, the product of the putative susceptibility gene for bipolar disorder, schizophrenia, and febrile seizures
Proteins, 67, 2007
1X3U
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SOLUTION STRUCTURE OF THE C-TERMINAL TRANSCRIPTIONAL ACTIVATOR DOMAIN OF FIXJ FROM SINORHIZOBIUM MELILOT
Descriptor:Transcriptional regulatory protein fixJ
Authors:Kurashima-Ito, K., Kasai, Y., Hosono, K., Tamura, K., Oue, S., Isogai, M., Ito, Y., Nakamura, H., Shiro, Y.
Deposit date:2005-05-10
Release date:2006-05-02
Modification date:2009-02-24
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter
Biochemistry, 44, 2005
1BK1
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ENDO-1,4-BETA-XYLANASE C
Descriptor:ENDO-1,4-B-XYLANASE C
Authors:Fushinobu, S., Ito, K., Konno, M., Wakagi, T., Matsuzawa, H.
Deposit date:1998-07-14
Release date:1999-01-13
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH.
Protein Eng., 11, 1998
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