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2EFA
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NEUTRON CRYSTAL STRUCTURE OF CUBIC INSULIN AT PD6.6
Descriptor:Insulin
Authors:Ishikawa, T., Tanaka, I., Niimura, N.
Deposit date:2007-02-22
Release date:2008-01-22
Last modified:2018-03-07
Method:NEUTRON DIFFRACTION (2.7 Å)
Cite:A neutron crystallographic analysis of a cubic porcine insulin at pD 6.6
Chem.Phys., 345, 2008
2ZPP
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NEUTRON CRYSTAL STRUCTURE OF CUBIC INSULIN AT PD9
Descriptor:Insulin A chain, Insulin B chain
Authors:Ishikawa, T., Tanaka, I., Niimura, N.
Deposit date:2008-07-26
Release date:2008-10-28
Last modified:2018-03-07
Method:NEUTRON DIFFRACTION (2.5 Å)
Cite:An abnormal pK(a) value of internal histidine of the insulin molecule revealed by neutron crystallographic analysis
Biochem.Biophys.Res.Commun., 376, 2008
3WG7
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A 1.9 ANGSTROM RADIATION DAMAGE FREE X-RAY STRUCTURE OF LARGE (420KDA) PROTEIN BY FEMTOSECOND CRYSTALLOGRAPHY
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Hirata, K., Shinzawa-Itoh, K., Yano, N., Takemura, S., Kato, K., Hatanaka, M., Muramoto, K., Kawahara, T., Tsukihara, T., Yamashita, E., Tono, K., Ueno, G., Hikima, T., Murakami, H., Inubushi, Y., Yabashi, M., Ishikawa, T., Yamamoto, M., Ogura, T., Sugimoto, H., Shen, J.R., Yoshikawa, S., Ago, H.
Deposit date:2013-07-29
Release date:2014-04-30
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Nat.Methods, 2014
3AJ8
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X-RAY ANALYSIS OF CRYSTAL OF PROTEINASE K OBTAINED FROM H2O SOLUTION USING PEG 8000
Descriptor:Proteinase K, CALCIUM ION, GLYCEROL
Authors:Chatake, T., Ishikawa, T., Morimoto, Y.
Deposit date:2010-05-27
Release date:2011-06-22
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
3AJ9
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X-RAY ANALYSIS OF CRYSTAL OF PROTEINASE K OBTAINED FROM D2O SOLUTION USING PEG 8000
Descriptor:Proteinase K, CALCIUM ION, GLYCEROL
Authors:Chatake, T., Ishikawa, T., Morimoto, Y.
Deposit date:2010-05-27
Release date:2011-06-22
Last modified:2012-05-02
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution X-ray study of the effects of deuteration on crystal growth and the crystal structure of proteinase K
Acta Crystallogr.,Sect.F, 67, 2011
2IY3
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STRUCTURE OF THE E. COLI SIGNAL REGOGNITION PARTICLE
Descriptor:Signal recognition particle protein,Signal recognition particle 54 kDa protein, 4.5S RNA, SIGNAL SEQUENCE
Authors:Schaffitzel, C., Oswald, M., Berger, I., Ishikawa, T., Abrahams, J.P., Koerten, H.K., Koning, R.I., Ban, N.
Deposit date:2006-07-12
Release date:2006-11-02
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Structure of the E. Coli Signal Recognition Particle Bound to a Translating Ribosome
Nature, 444, 2006
3JAO
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CILIARY MICROTUBULE DOUBLET
Descriptor:Tubulin alpha 1A chain, Tubulin beta chain, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Maheshwari, A., Obbineni, J.M., Bui, K.H., Shibata, K., Toyoshima, Y.Y., Ishikawa, T.
Deposit date:2015-06-18
Release date:2015-08-05
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (23 Å)
Cite:alpha- and beta-Tubulin Lattice of the Axonemal Microtubule Doublet and Binding Proteins Revealed by Single Particle Cryo-Electron Microscopy and Tomography.
Structure, 23, 2015
3RCD
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HER2 KINASE DOMAIN COMPLEXED WITH TAK-285
Descriptor:Receptor tyrosine-protein kinase erbB-2, N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-3-hydroxy-3-methylbutanamide
Authors:Aertgeerts, K., Skene, R., Sogabe, S.
Deposit date:2011-03-30
Release date:2011-11-23
Last modified:2011-12-14
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Design and Synthesis of Novel Human Epidermal Growth Factor Receptor 2 (HER2)/Epidermal Growth Factor Receptor (EGFR) Dual Inhibitors Bearing a Pyrrolo[3,2-d]pyrimidine Scaffold.
J.Med.Chem., 54, 2011
5GTH
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (DARK DATASET)
Descriptor:Photosystem II protein D1, Photosystem II CP47 reaction center protein, Photosystem II CP43 reaction center protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5GTI
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (TWO FLASH DATASET)
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-08-20
Release date:2017-03-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5WS5
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (PREFLASH DARK DATASET)
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5WS6
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NATIVE XFEL STRUCTURE OF PHOTOSYSTEM II (PREFLASH TWO-FLASH DATASET
Descriptor:Photosystem II D1 protein, Photosystem II CP47 reaction center protein, Photosystem II CP43 chlorophyll protein, ...
Authors:Suga, M., Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
3VNT
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CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF HUMAN VEGFR2 WITH A [1,3]THIAZOLO[5,4-B]PYRIDINE DERIVATIVE
Descriptor:Vascular endothelial growth factor receptor 2, 2-chloro-3-(1-cyanocyclopropyl)-N-[5-({2-[(cyclopropylcarbonyl)amino][1,3]thiazolo[5,4-b]pyridin-5-yl}oxy)-2-fluorophenyl]benzamide, 1,2-ETHANEDIOL
Authors:Oki, H.
Deposit date:2012-01-17
Release date:2012-04-11
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Design and synthesis of novel DFG-out RAF/vascular endothelial growth factor receptor 2 (VEGFR2) inhibitors. 1. Exploration of [5,6]-fused bicyclic scaffolds
J.Med.Chem., 55, 2012
4DBN
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CRYSTAL STRUCTURE OF THE KINASE DOMAIN OF HUMAN B-RAF WITH A [1,3]THIAZOLO[5,4-B]PYRIDINE DERIVATIVE
Descriptor:Serine/threonine-protein kinase B-raf, 2-chloro-3-(1-cyanocyclopropyl)-N-[5-({2-[(cyclopropylcarbonyl)amino][1,3]thiazolo[5,4-b]pyridin-5-yl}oxy)-2-fluorophenyl]benzamide
Authors:Yano, J.K., Aertgeerts, K.
Deposit date:2012-01-16
Release date:2012-04-11
Last modified:2012-06-13
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Design and synthesis of novel DFG-out RAF/vascular endothelial growth factor receptor 2 (VEGFR2) inhibitors. 1. Exploration of [5,6]-fused bicyclic scaffolds.
J.Med.Chem., 55, 2012
4FC0
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CRYSTAL STRUCTURE OF HUMAN KINASE DOMAIN OF B-RAF WITH A DFG-OUT INHIBITOR
Descriptor:Serine/threonine-protein kinase B-raf, 2-chloro-3-[(2-cyanopropan-2-yl)oxy]-N-{5-[{2-[(cyclopropylcarbonyl)amino][1,3]thiazolo[5,4-b]pyridin-5-yl}(methyl)amino]-2-fluorophenyl}benzamide
Authors:Yano, J.K., Aertgeerts, K.
Deposit date:2012-05-23
Release date:2014-01-08
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Design and synthesis of novel DFG-out RAF/vascular endothelial growth factor receptor 2 (VEGFR2) inhibitors: 3. Evaluation of 5-amino-linked thiazolo[5,4-d]pyrimidine and thiazolo[5,4-b]pyridine derivatives.
Bioorg.Med.Chem., 20, 2012
3W32
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EGFR KINASE DOMAIN COMPLEXED WITH COMPOUND 20A
Descriptor:Epidermal growth factor receptor, 4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)-N-[2-(methylsulfonyl)ethyl]-8,9-dihydro-7H-pyrimido[4,5-b]azepine-6-carboxamide, SULFATE ION
Authors:Sogabe, S., Kawakita, Y.
Deposit date:2012-12-07
Release date:2013-03-06
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design and synthesis of novel pyrimido[4,5-b]azepine derivatives as HER2/EGFR dual inhibitors
Bioorg.Med.Chem., 21, 2013
3W33
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EGFR KINASE DOMAIN COMPLEXED WITH COMPOUND 19B
Descriptor:Epidermal growth factor receptor, 4-{[4-(1-benzothiophen-4-yloxy)-3-chlorophenyl]amino}-N-(2-hydroxyethyl)-8,9-dihydro-7H-pyrimido[4,5-b]azepine-6-carboxamide, SULFATE ION
Authors:Sogabe, S., Kawakita, Y.
Deposit date:2012-12-07
Release date:2013-03-06
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design and synthesis of novel pyrimido[4,5-b]azepine derivatives as HER2/EGFR dual inhibitors
Bioorg.Med.Chem., 21, 2013
4KSP
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CRYSTAL STRUCTURE OF HUMAN B-RAF BOUND TO A DFG-OUT INHIBITOR TAK-632
Descriptor:Serine/threonine-protein kinase B-raf, N-{7-cyano-6-[4-fluoro-3-({[3-(trifluoromethyl)phenyl]acetyl}amino)phenoxy]-1,3-benzothiazol-2-yl}cyclopropanecarboxamide
Authors:Yano, J.K., Masanori, O.
Deposit date:2013-05-17
Release date:2013-07-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Discovery of a Selective Kinase Inhibitor (TAK-632) Targeting Pan-RAF Inhibition: Design, Synthesis, and Biological Evaluation of C-7-Substituted 1,3-Benzothiazole Derivatives.
J.Med.Chem., 56, 2013
4KSQ
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CRYSTAL STRUCTURE OF HUMAN B-RAF BOUND TO A DFG-OUT INHIBITOR 5B
Descriptor:Serine/threonine-protein kinase B-raf, N-{7-cyano-6-[4-fluoro-3-({[3-(trifluoromethyl)phenyl]carbamoyl}amino)phenoxy]-1,3-benzothiazol-2-yl}cyclopropanecarboxamide
Authors:Yano, J.K., Masanori, O.
Deposit date:2013-05-17
Release date:2013-07-24
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Discovery of a Selective Kinase Inhibitor (TAK-632) Targeting Pan-RAF Inhibition: Design, Synthesis, and Biological Evaluation of C-7-Substituted 1,3-Benzothiazole Derivatives.
J.Med.Chem., 56, 2013
4ZFZ
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CRYSTAL STRUCTURE OF RHESUS MACAQUE MHC CLASS I MOLECULE MAMU-B*098 COMPLEXED WITH MYRISTOYLATED 5-MER LIPOPEPTIDE DERIVED FROM SIV NEF PROTEIN
Descriptor:Major histocompatibility complex class I, Beta-2-microglobulin, 5-mer lipopeptide from Protein Nef, ...
Authors:Morita, D., Sugita, M.
Deposit date:2015-04-22
Release date:2016-01-13
Last modified:2016-01-27
Method:X-RAY DIFFRACTION (1.763 Å)
Cite:Crystal structure of the N-myristoylated lipopeptide-bound MHC class I complex
Nat Commun, 7, 2016
1IYN
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CRYSTAL STRUCTURE OF CHLOROPLASTIC ASCORBATE PEROXIDASE FROM TOBACCO PLANTS AND STRUCTURAL INSIGHTS FOR ITS INSTABILITY
Descriptor:Chloroplastic ascorbate peroxidase, SODIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Wada, K., Tada, T., Nakamura, Y.
Deposit date:2002-09-03
Release date:2003-09-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of chloroplastic ascorbate peroxidase from tobacco plants and structural insights into its instability
J.BIOCHEM.(TOKYO), 134, 2003
3KMF
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ROOM TEMPERATURE TIME-OF-FLIGHT NEUTRON DIFFRACTION STUDY OF DEOXY HUMAN NORMAL ADULT HEMOGLOBIN
Descriptor:Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kovalevsky, A.Y., Morimoto, Y., Chatake, T.
Deposit date:2009-11-10
Release date:2010-04-21
Last modified:2018-06-13
Method:NEUTRON DIFFRACTION (2 Å)
Cite:Direct Determination of Protonation States of Histidine Residues in a 2 A Neutron Structure of Deoxy-Human Normal Adult Hemoglobin and Implications for the Bohr Effect.
J.Mol.Biol., 398, 2010
3WIX
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CRYSTAL STRUCTURE OF MCL-1 IN COMPLEX WITH COMPOUND 4
Descriptor:Induced myeloid leukemia cell differentiation protein Mcl-1, 7-(4-carboxyphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid
Authors:Sogabe, S., Igaki, S., Hayano, Y.
Deposit date:2013-09-26
Release date:2013-11-27
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery of potent Mcl-1/Bcl-xL dual inhibitors by using a hybridization strategy based on structural analysis of target proteins.
J.Med.Chem., 56, 2013
3WIY
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CRYSTAL STRUCTURE OF MCL-1 IN COMPLEX WITH COMPOUND 10
Descriptor:Induced myeloid leukemia cell differentiation protein Mcl-1, 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid
Authors:Sogabe, S., Igaki, S., Hayano, Y.
Deposit date:2013-09-26
Release date:2013-11-27
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of potent Mcl-1/Bcl-xL dual inhibitors by using a hybridization strategy based on structural analysis of target proteins.
J.Med.Chem., 56, 2013
3WIZ
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CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH COMPOUND 10
Descriptor:Bcl-2-like protein 1, 7-(4-{[(4-{[(2R)-4-(dimethylamino)-1-(phenylsulfanyl)butan-2-yl]amino}-3-nitrophenyl)sulfonyl]carbamoyl}-2-methylphenyl)-3-[3-(naphthalen-1-yloxy)propyl]pyrazolo[1,5-a]pyridine-2-carboxylic acid, PHOSPHATE ION
Authors:Sogabe, S., Igaki, S., Hayano, Y.
Deposit date:2013-09-26
Release date:2013-11-27
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Discovery of potent Mcl-1/Bcl-xL dual inhibitors by using a hybridization strategy based on structural analysis of target proteins.
J.Med.Chem., 56, 2013
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