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1UDN
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CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH FROM AQUIFEX AEOLICUS
Descriptor:Ribonuclease PH, PHOSPHATE ION, SULFATE ION
Authors:Ishii, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDO
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CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH R86A MUTANT FROM AQUIFEX AEOLICUS
Descriptor:Ribonuclease PH, PHOSPHATE ION, SULFATE ION
Authors:Ishii, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDQ
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CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH T125A MUTANT FROM AQUIFEX AEOLICUS
Descriptor:Ribonuclease PH, PHOSPHATE ION, SULFATE ION
Authors:Ishii, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1UDS
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CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH R126A MUTANT FROM AQUIFEX AEOLICUS
Descriptor:Ribonuclease PH, PHOSPHATE ION, SULFATE ION
Authors:Ishii, R., Nureki, O., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-02
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the tRNA Processing Enzyme RNase PH from Aquifex aeolicus
J.Biol.Chem., 278, 2003
1WW1
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CRYSTAL STRUCTURE OF TRNASE Z FROM THERMOTOGA MARITIMA
Descriptor:tRNase Z, ZINC ION
Authors:Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-30
Release date:2005-02-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the tRNA 3' Processing Endoribonuclease tRNase Z from Thermotoga maritima
J.Biol.Chem., 280, 2005
2E7Y
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HIGH RESOLUTION STRUCTURE OF T. MARITIMA TRNASE Z
Descriptor:tRNase Z, ZINC ION, SULFATE ION, ...
Authors:Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-15
Release date:2007-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
Acta Crystallogr.,Sect.F, 63, 2007
2YVT
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CRYSTAL STRUCTURE OF AQ_1956
Descriptor:Hypothetical protein aq_1956
Authors:Ishii, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of aq_1956
To be Published
2YVU
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CRYSTAL STRUCTURE OF APE1195
Descriptor:Probable adenylyl-sulfate kinase
Authors:Ishii, R., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of APE1195
To be published
5B83
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CRYSTAL STRUCTURE OF OPTINEURIN UBAN IN COMPLEX WITH LINEAR UBIQUITIN
Descriptor:tetra ubiquitin, Optineurin
Authors:Ishii, R., Nureki, O.
Deposit date:2016-06-12
Release date:2016-09-07
Method:X-RAY DIFFRACTION (2.694 Å)
Cite:Linear ubiquitination is involved in the pathogenesis of optineurin-associated amyotrophic lateral sclerosis
Nat Commun, 7, 2016
3W1W
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PROTEIN-DRUG COMPLEX
Descriptor:Ferrochelatase, mitochondrial, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Ishii, R., Gupta, V., Yamaguchi, Y., Handa, H., Nureki, O.
Deposit date:2012-11-21
Release date:2013-10-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:Salicylic Acid induces mitochondrial injury by inhibiting ferrochelatase heme biosynthesis activity
Mol.Pharmacol., 84, 2013
3VQV
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH AMPPNP (RE-REFINED)
Descriptor:Pyrrolysine--tRNA ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION
Authors:Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2012-04-01
Release date:2013-01-02
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
2D54
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CRYSTAL STRUCTURE OF METHIONYL TRNA SYNTHETASE Y225A MUTANT FROM THERMUS THERMOPHILUS
Descriptor:Methionyl-tRNA synthetase, ZINC ION
Authors:Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-28
Release date:2006-12-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Y225F/Amutation for Met-tRNA synthetase reveals importance of hydrophobic circumstance
To be Published
2D5B
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS METHIONYL TRNA SYNTHETASE Y225F MUTANT OBTAINED IN THE PRESENCE OF PEG6000
Descriptor:Methionyl-tRNA Synthetase, ZINC ION
Authors:Konno, M., Takeda, R., Takasaka, R., Mori, Y., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-31
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Y225F/A Mutation for Met-tRNA synthetase reveals importance of hydrophobic circumstances
To be Published
1WWR
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CRYSTAL STRUCTURE OF TRNA ADENOSINE DEAMINASE TADA FROM AQUIFEX AEOLICUS
Descriptor:tRNA adenosine deaminase TadA, ZINC ION
Authors:Kuratani, M., Ishii, R., Bessho, Y., Fukunaga, R., Sengoku, T., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
J.Biol.Chem., 280, 2005
2YVL
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CRYSTAL STRUCTURE OF TRNA (M1A58) METHYLTRANSFERASE TRMI FROM AQUIFEX AEOLICUS
Descriptor:Hypothetical protein, S-ADENOSYLMETHIONINE
Authors:Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
To be Published
2YX0
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CRYSTAL STRUCTURE OF P. HORIKOSHII TYW1
Descriptor:radical sam enzyme
Authors:Goto-Ito, S., Ishii, R., Ito, T., Shibata, R., Fusatomi, E., Sekine, S., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-23
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis
Acta Crystallogr.,Sect.D, 63, 2007
3WNB
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CRYSTAL STRUCTURE OF EF-PYL IN COMPLEX WITH GMPPNP
Descriptor:Protein translation elongation factor 1A, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION
Authors:Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
To be Published
3WNC
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CRYSTAL STRUCTURE OF EF-PYL IN COMPLEX WITH GDP
Descriptor:Protein translation elongation factor 1A, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
To be Published
3WND
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CRYSTAL STRUCTURE OF EF-PYL
Descriptor:Protein translation elongation factor 1A, CITRIC ACID
Authors:Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
To be Published
3WTR
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CRYSTAL STRUCTURE OF E. COLI YFCM BOUND TO CO(II)
Descriptor:Uncharacterized protein, COBALT (II) ION
Authors:Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-19
Release date:2015-04-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation
Nucleic Acids Res., 42, 2014
3WUH
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QRI7 AND AMP COMPLEX
Descriptor:tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial, ZINC ION, ...
Authors:Tominaga, T., Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-24
Release date:2014-09-17
Method:X-RAY DIFFRACTION (2.937 Å)
Cite:Structure of Saccharomyces cerevisiae mitochondrial Qri7 in complex with AMP
ACTA CRYSTALLOGR.,SECT.F, 70, 2014
4MKP
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CRYSTAL STRUCTURE OF HUMAN CGAS APO FORM
Descriptor:Cyclic GMP-AMP synthase, ZINC ION
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2013-09-05
Release date:2013-10-30
Method:X-RAY DIFFRACTION (1.953 Å)
Cite:Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Plos One, 8, 2013
4PDN
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CRYSTAL STRUCTURE OF E. COLI YFCM
Descriptor:Uncharacterized protein, MAGNESIUM ION
Authors:Kobayashi, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2014-04-19
Release date:2015-03-04
Last modified:2015-04-08
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation.
Nucleic Acids Res., 42, 2014
4XJ1
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CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV APO FORM
Descriptor:Cyclic AMP-GMP synthase, 1,2-ETHANEDIOL
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
4XJ3
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CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV GTP BOUND FORM
Descriptor:Cyclic AMP-GMP synthase, MAGNESIUM ION, 1,2-ETHANEDIOL, ...
Authors:Kato, K., Ishii, R., Ishitani, R., Nureki, O.
Deposit date:2015-01-08
Release date:2015-04-29
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Basis for the Catalytic Mechanism of DncV, Bacterial Homolog of Cyclic GMP-AMP Synthase
Structure, 23, 2015
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