Author results

1ED7
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor:CHITINASE A1
Authors:Ikegami, T., Okada, T., Hashimoto, M., Seino, S., Watanabe, T., Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
1FR0
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SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.
Descriptor:ARCB
Authors:Ikegami, T., Okada, T., Ohki, I., Hirayama, J., Mizuno, T., Shirakawa, M.
Deposit date:2000-09-07
Release date:2001-03-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli.
Biochemistry, 40, 2001
1XPA
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SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE
Descriptor:XPA, ZINC ION
Authors:Ikegami, T., Kuraoka, I., Saijo, M., Kodo, N., Kyogoku, Y., Morikawa, K., Tanaka, K., Shirakawa, M.
Deposit date:1998-07-06
Release date:1999-07-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA.
Nat.Struct.Biol., 5, 1998
1WSO
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THE SOLUTION STRUCTURES OF HUMAN OREXIN-A
Descriptor:Orexin-A
Authors:Ikegami, T., Takai, T.
Deposit date:2004-11-08
Release date:2004-11-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor
J.Pept.Sci., 12, 2006
5ZF0
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X-RAY STRUCTURE OF THE ELECTRON TRANSFER COMPLEX BETWEEN FERREDOXIN AND PHOTOSYSTEM I
Descriptor:Photosystem I P700 chlorophyll a apoprotein A1, Photosystem I P700 chlorophyll a apoprotein A2, Photosystem I iron-sulfur center, ...
Authors:Kubota-Kawai, H., Mutoh, R., Shinmura, K., Setif, P., Nowaczyk, M., Roegner, M., Ikegami, T., Tanaka, T., Kurisu, G.
Deposit date:2018-03-01
Release date:2018-04-11
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex
Nat Plants, 4, 2018
3A57
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CRYSTAL STRUCTURE OF THERMOSTABLE DIRECT HEMOLYSIN
Descriptor:Thermostable direct hemolysin 2
Authors:Hashimoto, H., Yanagihara, I., Nakahira, K., Hamada, D., Ikegami, T., Mayanagi, K., Kaieda, S., Fukui, T., Ohnishi, K., Kajiyama, S., Yamane, T., Ikeguchi, M., Honda, T., Shimizu, T., Sato, M.
Deposit date:2009-08-03
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
1K85
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SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN FROM BACILLUS CIRCULANS WL-12 CHITINASE A1.
Descriptor:CHITINASE A1
Authors:Jee, J.G., Ikegami, T., Hashimoto, M., Kawabata, T., Ikeguchi, M., Watanabe, T., Shirakawa, M.
Deposit date:2001-10-23
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Fibronectin Type III Domain from Bacillus circulans WL-12 Chitinase A1
J.Biol.Chem., 277, 2002
1WU0
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SOLUTION STRUCTURE OF SUBUNIT C OF F1FO-ATP SYNTHASE FROM THE THERMOPHILIC BACILLUS PS3
Descriptor:ATP synthase C chain
Authors:Nakano, T., Ikegami, T., Suzuki, T., Yoshida, M., Akutsu, H.
Deposit date:2004-11-29
Release date:2005-12-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:solution structure TF1Fo subunit c
To be Published
1WUZ
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STRUCTURE OF EC1 DOMAIN OF CNR
Descriptor:Pcdha4 protein
Authors:Morishita, H., Umitsu, M., Yamaguchi, T., Murata, Y., Shibata, N., Udaka, K., Higuchi, Y., Akutsu, H., Yagi, T., Ikegami, T.
Deposit date:2004-12-09
Release date:2005-12-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural diversity of the first cadherin domains revealed by the structure of CNR/Protocadherin alpha
To be Published
2CZN
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF HYPERTHERMOPHILIC CHITINASE FROM PYROCOCCUS FURIOSUS
Descriptor:chitinase
Authors:Uegaki, T., Ikegami, T., Nakamura, T., Hagihara, Y., Mine, S., Inoue, T., Matsumura, H., Ataka, M., Ishikawa, K.
Deposit date:2005-07-13
Release date:2006-07-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus.
J.Mol.Biol., 381, 2008
2D49
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF STREPTOMYCES GRISEUS CHITINASE C
Descriptor:chitinase C
Authors:Akagi, K., Watanabe, J., Hara, M., Kezuka, Y., Chikaishi, E., Yamaguchi, T., Akutsu, H., Nonaka, T., Watanabe, T., Ikegami, T.
Deposit date:2005-10-11
Release date:2006-10-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Identification of the substrate interaction region of the chitin-binding domain of Streptomyces griseus chitinase C
J.Biochem.(Tokyo), 139, 2006
2EIX
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THE STRUCTURE OF PHYSARUM POLYCEPHALUM CYTOCHROME B5 REDUCTASE
Descriptor:NADH-cytochrome b5 reductase, IODIDE ION, SODIUM ION, ...
Authors:Kim, S.W., Suga, M., Ogasahara, K., Ikegami, T., Minami, Y., Yubisui, T., Tsukihara, T.
Deposit date:2007-03-14
Release date:2007-04-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure of Physarum polycephalum cytochrome b5 reductase at 1.56 A resolution.
Acta Crystallogr.,Sect.F, 63, 2007
2ND5
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LYSINE DIMETHYLATED FKBP12
Descriptor:Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Hattori, Y., Sebera, J., Sychrovsky, V., Furuita, K., Sugiki, T., Ohki, I., Ikegami, T., Kobayashi, N., Tanaka, Y., Fujiwara, T., Kojima, C.
Deposit date:2016-05-05
Release date:2017-05-17
Method:SOLUTION NMR
Cite:NMR Observation of Protein Surface Salt Bridges at Neutral pH
To be Published
2RTT
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF CHI18AC FROM STREPTOMYCES COELICOLOR
Descriptor:ChiC
Authors:Okumura, A., Uemura, M., Yamada, N., Chikaishi, E., Takai, T., Yoshio, S., Akagi, K., Morita, J., Lee, Y., Yokogawa, D., Suzuki, K., Watanabe, T., Ikegami, T.
Deposit date:2013-08-26
Release date:2014-08-27
Method:SOLUTION NMR
Cite:Solution structure of the Chitin-binding domain of chitinase Chi18aC from Streptomyces coelicolor
To be Published
2RUJ
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SOLUTION STRUCTURE OF MTSL SPIN-LABELED SCHIZOSACCHAROMYCES POMBE SIN1 CRIM DOMAIN
Descriptor:Stress-activated map kinase-interacting protein 1
Authors:Furuita, K., Kataoka, S., Sugiki, T., Kobayashi, N., Ikegami, T., Shiozaki, K., Fujiwara, T., Kojima, C.
Deposit date:2014-07-24
Release date:2015-07-29
Method:SOLUTION NMR
Cite:Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints
J.Biomol.Nmr, 61, 2015
1GEA
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RECEPTOR-BOUND CONFORMATION OF PACAP21
Descriptor:PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE
Authors:Inooka, H., Ohtaki, T., Kitahara, O., Ikegami, T., Endo, S., Kitada, C., Ogi, K., Onda, H., Fujino, M., Shirakawa, M.
Deposit date:2000-10-20
Release date:2001-04-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Conformation of a peptide ligand bound to its G-protein coupled receptor.
Nat.Struct.Biol., 8, 2001
2D1X
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THE CRYSTAL STRUCTURE OF THE CORTACTIN-SH3 DOMAIN AND AMAP1-PEPTIDE COMPLEX
Descriptor:cortactin isoform a, proline rich region from development and differentiation enhancing factor 1, SULFATE ION
Authors:Hashimoto, S., Hirose, M., Hashimoto, A., Morishige, M., Yamada, A., Hosaka, H., Akagi, K., Ogawa, E., Oneyama, C., Agatsuma, T., Okada, M., Kobayashi, H., Wada, H., Nakano, H., Ikegami, T., Nakagawa, A., Sabe, H.
Deposit date:2005-09-01
Release date:2006-04-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2RPQ
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SOLUTION STRUCTURE OF A SUMO-INTERACTING MOTIF OF MBD1-CONTAINING CHROMATIN-ASSOCIATED FACTOR 1 BOUND TO SUMO-3
Descriptor:Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1
Authors:Sekiyama, N., Ikegami, T., Yamane, T., Ikeguchi, M., Uchimura, Y., Baba, D., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2015-12-09
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
2RRH
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NMR STRUCTURE OF VASOACTIVE INTESTINAL PEPTIDE IN METHANOL
Descriptor:VIP peptides
Authors:Umetsu, Y., Tenno, T., Goda, N., Ikegami, T., Hiroaki, H.
Deposit date:2010-11-12
Release date:2011-04-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural difference of vasoactive intestinal peptide in two distinct membrane mimicking environments
Biochem.Biophys.Acta Proteins & Proteomics, 2011
2RRI
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NMR STRUCTURE OF VASOACTIVE INTESTINAL PEPTIDE IN DPC MICELLE
Descriptor:Vasoactive intestinal peptide
Authors:Umetsu, Y., Tenno, T., Goda, N., Shirakawa, M., Ikegami, T., Hiroaki, H.
Deposit date:2010-12-21
Release date:2011-04-06
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments
Biochim.Biophys.Acta, 1814, 2011
2RSY
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SOLUTION STRUCTURE OF THE SH2 DOMAIN OF CSK IN COMPLEX WITH A PHOSPHOPEPTIDE FROM CBP
Descriptor:Tyrosine-protein kinase CSK, Phosphoprotein associated with glycosphingolipid-enriched microdomains 1
Authors:Tanaka, H., Akagi, K., Oneyama, C., Tanaka, M., Sasaki, Y., Kanou, T., Lee, Y., Yokogawa, D., Debenecker, M., Nakagawa, A., Okada, M., Ikegami, T.
Deposit date:2012-09-10
Release date:2013-04-10
Method:SOLUTION NMR
Cite:Identification of a new interaction mode between the Src homology 2 (SH2) domain of C-terminal Src kinase (Csk) and Csk-binding protein (Cbp)/phosphoprotein associated with glycosphingolipid microdomains (PAG)
J.Biol.Chem., 2013
1IG4
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SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF HUMAN MBD1 IN COMPLEX WITH METHYLATED DNA
Descriptor:5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3', Methyl-CpG Binding Protein
Authors:Ohki, I., Shimotake, N., Fujita, N., Jee, J.-G., Ikegami, T., Nakao, M., Shirakawa, M.
Deposit date:2001-04-17
Release date:2001-05-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA.
Cell(Cambridge,Mass.), 105, 2001
1SNH
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SOLUTION STRUCTURE OF THE DNA DECAMER DUPLEX CONTAINING DOUBLE TG MISMATCHES OF CIS-SYN CYCLOBUTANE PYRIMIDINE DIMER
Descriptor:5'-D(*CP*GP*CP*AP*TP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*GP*GP*TP*GP*CP*G)-3'
Authors:Lee, J.H., Park, C.J., Shin, J.S., Ikegami, T., Akutsu, H., Choi, B.S.
Deposit date:2004-03-11
Release date:2004-05-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.
Nucleic Acids Res., 32, 2004
2MXA
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SOLUTION STRUCTURE OF THE NDH-1 COMPLEX SUBUNIT CUPS FROM THERMOSYNECHOCOCCUS ELONGATUS
Descriptor:NDH-1 complex sensory subunit CupS
Authors:Korste, A., Wulfhorst, H., Ikegami, T., Nowaczyk, M.M., Stoll, R.
Deposit date:2014-12-17
Release date:2015-06-10
Last modified:2015-08-26
Method:SOLUTION NMR
Cite:Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus.
Biochim.Biophys.Acta, 1847, 2015
2N5U
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SOLUTION STRUCTURE OF THE CYANOBACTERIAL CYTOCHROME B6F COMPLEX SUBUNIT PETP
Descriptor:Tsr0524 protein
Authors:Veit, S., Ikegami, T., Roegner, M., Stoll, R.
Deposit date:2015-07-29
Release date:2016-04-13
Last modified:2016-05-18
Method:SOLUTION NMR
Cite:The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution
Biochim.Biophys.Acta, 1857, 2016
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