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1ED7
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BU of 1ed7 by Molmil
SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor: CHITINASE A1
Authors:Ikegami, T, Okada, T, Hashimoto, M, Seino, S, Watanabe, T, Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
1FR0
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BU of 1fr0 by Molmil
SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.
Descriptor: ARCB
Authors:Ikegami, T, Okada, T, Ohki, I, Hirayama, J, Mizuno, T, Shirakawa, M.
Deposit date:2000-09-07
Release date:2001-03-14
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli.
Biochemistry, 40, 2001
1XPA
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BU of 1xpa by Molmil
SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE
Descriptor: XPA, ZINC ION
Authors:Ikegami, T, Kuraoka, I, Saijo, M, Kodo, N, Kyogoku, Y, Morikawa, K, Tanaka, K, Shirakawa, M.
Deposit date:1998-07-06
Release date:1999-07-22
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA.
Nat.Struct.Biol., 5, 1998
1WSO
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BU of 1wso by Molmil
The solution structures of human Orexin-A
Descriptor: Orexin-A
Authors:Ikegami, T, Takai, T.
Deposit date:2004-11-08
Release date:2004-11-30
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor
J.Pept.Sci., 12, 2006
1K85
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BU of 1k85 by Molmil
Solution structure of the fibronectin type III domain from Bacillus circulans WL-12 Chitinase A1.
Descriptor: CHITINASE A1
Authors:Jee, J.G, Ikegami, T, Hashimoto, M, Kawabata, T, Ikeguchi, M, Watanabe, T, Shirakawa, M.
Deposit date:2001-10-23
Release date:2002-12-18
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution Structure of the Fibronectin Type III Domain from Bacillus circulans WL-12 Chitinase A1
J.Biol.Chem., 277, 2002
5ZF0
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BU of 5zf0 by Molmil
X-ray Structure of the Electron Transfer Complex between Ferredoxin and Photosystem I
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Kubota-Kawai, H, Mutoh, R, Shinmura, K, Setif, P, Nowaczyk, M, Roegner, M, Ikegami, T, Tanaka, T, Kurisu, G.
Deposit date:2018-03-01
Release date:2018-04-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex
Nat Plants, 4, 2018
7WEM
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BU of 7wem by Molmil
Solid-state NMR Structure of TFo c-Subunit Ring
Descriptor: ATP synthase subunit c
Authors:Akutsu, H, Todokoro, Y, Kang, S.-J, Suzuki, T, Yoshida, M, Ikegami, T, Fujiwara, T.
Deposit date:2021-12-23
Release date:2022-08-10
Last modified:2022-08-24
Method:SOLID-STATE NMR
Cite:Chemical Conformation of the Essential Glutamate Site of the c -Ring within Thermophilic Bacillus F o F 1 -ATP Synthase Determined by Solid-State NMR Based on its Isolated c -Ring Structure.
J.Am.Chem.Soc., 144, 2022
2ND5
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BU of 2nd5 by Molmil
Lysine dimethylated FKBP12
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A
Authors:Hattori, Y, Sebera, J, Sychrovsky, V, Furuita, K, Sugiki, T, Ohki, I, Ikegami, T, Kobayashi, N, Tanaka, Y, Fujiwara, T, Kojima, C.
Deposit date:2016-05-05
Release date:2017-05-17
Method:SOLUTION NMR
Cite:NMR Observation of Protein Surface Salt Bridges at Neutral pH
To be Published
1GEA
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BU of 1gea by Molmil
RECEPTOR-BOUND CONFORMATION OF PACAP21
Descriptor: PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE
Authors:Inooka, H, Ohtaki, T, Kitahara, O, Ikegami, T, Endo, S, Kitada, C, Ogi, K, Onda, H, Fujino, M, Shirakawa, M.
Deposit date:2000-10-20
Release date:2001-04-20
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Conformation of a peptide ligand bound to its G-protein coupled receptor.
Nat.Struct.Biol., 8, 2001
1SNH
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BU of 1snh by Molmil
Solution structure of the DNA Decamer Duplex Containing Double TG Mismatches of Cis-syn Cyclobutane Pyrimidine Dimer
Descriptor: 5'-D(*CP*GP*CP*AP*TP*TP*AP*CP*GP*C)-3', 5'-D(*GP*CP*GP*TP*GP*GP*TP*GP*CP*G)-3'
Authors:Lee, J.H, Park, C.J, Shin, J.S, Ikegami, T, Akutsu, H, Choi, B.S.
Deposit date:2004-03-11
Release date:2004-05-18
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR structure of the DNA decamer duplex containing double T*G mismatches of cis-syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC-hHR23B complex.
Nucleic Acids Res., 32, 2004
1WU0
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BU of 1wu0 by Molmil
Solution structure of subunit c of F1Fo-ATP synthase from the thermophilic bacillus PS3
Descriptor: ATP synthase C chain
Authors:Nakano, T, Ikegami, T, Suzuki, T, Yoshida, M, Akutsu, H.
Deposit date:2004-11-29
Release date:2005-12-13
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:solution structure TF1Fo subunit c
To be Published
1WUZ
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BU of 1wuz by Molmil
Structure of EC1 domain of CNR
Descriptor: Pcdha4 protein
Authors:Morishita, H, Umitsu, M, Yamaguchi, T, Murata, Y, Shibata, N, Udaka, K, Higuchi, Y, Akutsu, H, Yagi, T, Ikegami, T.
Deposit date:2004-12-09
Release date:2005-12-13
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural diversity of the first cadherin domains revealed by the structure of CNR/Protocadherin alpha
To be Published
3A57
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BU of 3a57 by Molmil
Crystal structure of Thermostable Direct Hemolysin
Descriptor: Thermostable direct hemolysin 2
Authors:Hashimoto, H, Yanagihara, I, Nakahira, K, Hamada, D, Ikegami, T, Mayanagi, K, Kaieda, S, Fukui, T, Ohnishi, K, Kajiyama, S, Yamane, T, Ikeguchi, M, Honda, T, Shimizu, T, Sato, M.
Deposit date:2009-08-03
Release date:2010-03-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
2D49
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BU of 2d49 by Molmil
Solution structure of the Chitin-Binding Domain of Streptomyces griseus Chitinase C
Descriptor: chitinase C
Authors:Akagi, K, Watanabe, J, Hara, M, Kezuka, Y, Chikaishi, E, Yamaguchi, T, Akutsu, H, Nonaka, T, Watanabe, T, Ikegami, T.
Deposit date:2005-10-11
Release date:2006-10-11
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Identification of the substrate interaction region of the chitin-binding domain of Streptomyces griseus chitinase C
J.Biochem.(Tokyo), 139, 2006
2N5U
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BU of 2n5u by Molmil
Solution structure of the cyanobacterial cytochrome b6f complex subunit PetP
Descriptor: Tsr0524 protein
Authors:Veit, S, Ikegami, T, Roegner, M, Stoll, R.
Deposit date:2015-07-29
Release date:2016-04-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The cyanobacterial cytochrome b6f subunit PetP adopts an SH3 fold in solution
Biochim.Biophys.Acta, 1857, 2016
2MXA
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BU of 2mxa by Molmil
Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus
Descriptor: NDH-1 complex sensory subunit CupS
Authors:Korste, A, Wulfhorst, H, Ikegami, T, Nowaczyk, M.M, Stoll, R.
Deposit date:2014-12-17
Release date:2015-06-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus.
Biochim.Biophys.Acta, 1847, 2015
2CZN
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BU of 2czn by Molmil
Solution structure of the chitin-binding domain of hyperthermophilic chitinase from pyrococcus furiosus
Descriptor: chitinase
Authors:Uegaki, T, Ikegami, T, Nakamura, T, Hagihara, Y, Mine, S, Inoue, T, Matsumura, H, Ataka, M, Ishikawa, K.
Deposit date:2005-07-13
Release date:2006-07-18
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus.
J.Mol.Biol., 381, 2008
2EIX
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BU of 2eix by Molmil
The Structure of Physarum polycephalum cytochrome b5 reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, IODIDE ION, ...
Authors:Kim, S.W, Suga, M, Ogasahara, K, Ikegami, T, Minami, Y, Yubisui, T, Tsukihara, T.
Deposit date:2007-03-14
Release date:2007-04-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structure of Physarum polycephalum cytochrome b5 reductase at 1.56 A resolution.
Acta Crystallogr.,Sect.F, 63, 2007
1IG4
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BU of 1ig4 by Molmil
Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA
Descriptor: 5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3', Methyl-CpG Binding Protein
Authors:Ohki, I, Shimotake, N, Fujita, N, Jee, J.-G, Ikegami, T, Nakao, M, Shirakawa, M.
Deposit date:2001-04-17
Release date:2001-05-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA.
Cell(Cambridge,Mass.), 105, 2001
2D1X
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BU of 2d1x by Molmil
The crystal structure of the cortactin-SH3 domain and AMAP1-peptide complex
Descriptor: SULFATE ION, cortactin isoform a, proline rich region from development and differentiation enhancing factor 1
Authors:Hashimoto, S, Hirose, M, Hashimoto, A, Morishige, M, Yamada, A, Hosaka, H, Akagi, K, Ogawa, E, Oneyama, C, Agatsuma, T, Okada, M, Kobayashi, H, Wada, H, Nakano, H, Ikegami, T, Nakagawa, A, Sabe, H.
Deposit date:2005-09-01
Release date:2006-04-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Targeting AMAP1 and cortactin binding bearing an atypical src homology 3/proline interface for prevention of breast cancer invasion and metastasis.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2RUJ
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BU of 2ruj by Molmil
Solution structure of MTSL spin-labeled Schizosaccharomyces pombe Sin1 CRIM domain
Descriptor: Stress-activated map kinase-interacting protein 1
Authors:Furuita, K, Kataoka, S, Sugiki, T, Kobayashi, N, Ikegami, T, Shiozaki, K, Fujiwara, T, Kojima, C.
Deposit date:2014-07-24
Release date:2015-07-29
Method:SOLUTION NMR
Cite:Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints
J.Biomol.Nmr, 61, 2015
2RTT
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BU of 2rtt by Molmil
Solution structure of the chitin-binding domain of Chi18aC from Streptomyces coelicolor
Descriptor: ChiC
Authors:Okumura, A, Uemura, M, Yamada, N, Chikaishi, E, Takai, T, Yoshio, S, Akagi, K, Morita, J, Lee, Y, Yokogawa, D, Suzuki, K, Watanabe, T, Ikegami, T.
Deposit date:2013-08-26
Release date:2014-08-27
Method:SOLUTION NMR
Cite:Solution structure of the Chitin-binding domain of chitinase Chi18aC from Streptomyces coelicolor
To be Published
2RSY
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BU of 2rsy by Molmil
Solution structure of the SH2 domain of Csk in complex with a phosphopeptide from Cbp
Descriptor: Phosphoprotein associated with glycosphingolipid-enriched microdomains 1, Tyrosine-protein kinase CSK
Authors:Tanaka, H, Akagi, K, Oneyama, C, Tanaka, M, Sasaki, Y, Kanou, T, Lee, Y, Yokogawa, D, Debenecker, M, Nakagawa, A, Okada, M, Ikegami, T.
Deposit date:2012-09-10
Release date:2013-04-10
Last modified:2019-12-25
Method:SOLUTION NMR
Cite:Identification of a new interaction mode between the Src homology 2 domain of C-terminal Src kinase (Csk) and Csk-binding protein/phosphoprotein associated with glycosphingolipid microdomains.
J.Biol.Chem., 288, 2013
2RPQ
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BU of 2rpq by Molmil
Solution Structure of a SUMO-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
Descriptor: Activating transcription factor 7-interacting protein 1, Small ubiquitin-related modifier 2
Authors:Sekiyama, N, Ikegami, T, Yamane, T, Ikeguchi, M, Uchimura, Y, Baba, D, Ariyoshi, M, Tochio, H, Saitoh, H, Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2015-12-09
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
2RRH
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BU of 2rrh by Molmil
NMR structure of vasoactive intestinal peptide in Methanol
Descriptor: VIP peptides
Authors:Umetsu, Y, Tenno, T, Goda, N, Ikegami, T, Hiroaki, H.
Deposit date:2010-11-12
Release date:2011-04-06
Last modified:2020-01-01
Method:SOLUTION NMR
Cite:Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments.
Biochim.Biophys.Acta, 1814, 2011

 

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