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1BZA
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BU of 1bza by Molmil
BETA-LACTAMASE TOHO-1 FROM ESCHERICHIA COLI TUH12191
Descriptor: BETA-LACTAMASE, SULFATE ION
Authors:Ibuka, A, Taguchi, A, Ishiguro, M, Fushinobu, S, Ishii, Y, Kamitori, S, Okuyama, K, Yamaguchi, K, Konno, M, Matsuzawa, H.
Deposit date:1998-10-28
Release date:1999-04-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the E166A mutant of extended-spectrum beta-lactamase Toho-1 at 1.8 A resolution.
J.Mol.Biol., 285, 1999
4WBG
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BU of 4wbg by Molmil
Crystal structure of class C beta-lactamase Mox-1 covalently complexed with aztorenam
Descriptor: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, ACETATE ION, Beta-lactamase, ...
Authors:Oguri, T, Shimizu-ibuka, A, Ishii, Y.
Deposit date:2014-09-03
Release date:2015-07-01
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational Change Observed in the Active Site of Class C beta-Lactamase MOX-1 upon Binding to Aztreonam
Antimicrob.Agents Chemother., 59, 2015
7YRP
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BU of 7yrp by Molmil
Crystal structure of VIM-28 metallo-beta-lactamase
Descriptor: CITRATE ANION, GLYCEROL, Metallo-beta-lactamase VIM-28, ...
Authors:Shimizu-Ibuka, A, Sato, H.
Deposit date:2022-08-10
Release date:2023-06-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of VIM-28 metallo-beta-lactamase
To Be Published
5YH4
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BU of 5yh4 by Molmil
Miraculin-like protein from Vitis vinifera
Descriptor: 1,2-ETHANEDIOL, mirauclin-like protein
Authors:Shimizu-Ibuka, A, Furukawa, N.
Deposit date:2017-09-27
Release date:2018-10-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural and functional analysis of miraculin-like protein from Vitis vinifera.
Biochim Biophys Acta Proteins Proteom, 1866, 2018
5ZYB
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BU of 5zyb by Molmil
Crystal structure of MOX-1 complexed with a boronic acid transition state inhibitor S02030
Descriptor: 1-{(2R)-2-(dihydroxyboranyl)-2-[(thiophen-2-ylacetyl)amino]ethyl}-1H-1,2,3-triazole-4-carboxylic acid, ACETATE ION, Beta-lactamase, ...
Authors:Shimizu-Ibuka, A, Furukawa, N.
Deposit date:2018-05-23
Release date:2019-06-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of MOX-1 complexed with a boronic acid transition state inhibitor S02030
To Be Published
6L3S
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BU of 6l3s by Molmil
Crystal structure of metallo-beta-lactamase IMP-27 from Morganella morganii
Descriptor: IMP-27 metallo-beta-lactamase, ZINC ION
Authors:Kato, Y, Shimizu-Ibuka, A.
Deposit date:2019-10-15
Release date:2020-10-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the metallo-beta-lactamase IMP-27
To Be Published
7XLL
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BU of 7xll by Molmil
Alanine racemase from Lactobacillus sakei Uonuma-1.
Descriptor: ACETATE ION, ALANINE, Alanine racemase, ...
Authors:Shimizu-Ibuka, A, Kato, Y.
Deposit date:2022-04-22
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Regulation of alanine racemase activity by carboxylates and the d-type substrate d-alanine.
Febs J., 290, 2023
5B3R
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BU of 5b3r by Molmil
Crystal structure of metallo-beta-lactamase IMP-18 from Pseudomonas aeruginosa
Descriptor: CITRIC ACID, IMP-18, ZINC ION
Authors:Shimizu-Ibuka, A, Ishii, Y.
Deposit date:2016-03-10
Release date:2017-02-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Mutagenic Analysis of Metallo-beta-Lactamase IMP-18
Antimicrob. Agents Chemother., 60, 2016
2ZC7
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BU of 2zc7 by Molmil
Crystal Structure of Class C beta-Lactamase ACT-1
Descriptor: Beta-lactamase ACT-1
Authors:Shimizu-Ibuka, A, Sakai, H, Galleni, M.
Deposit date:2007-11-02
Release date:2008-09-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the plasmid-mediated class C beta-lactamase ACT-1
Acta Crystallogr.,Sect.F, 64, 2008
1WE4
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BU of 1we4 by Molmil
Crystal Structure of Class A beta-Lactamase Toho-1 G238C mutant
Descriptor: Beta-lactamase Toho-1, SULFATE ION
Authors:Shimizu-Ibuka, A, Matsuzawa, H, Sakai, H.
Deposit date:2004-05-24
Release date:2005-03-15
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:An Engineered Disulfide Bond between Residues 69 and 238 in Extended-Spectrum beta-Lactamase Toho-1 Reduces Its Activity toward Third-Generation Cephalosporins
Biochemistry, 43, 2004
3W8K
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BU of 3w8k by Molmil
Crystal structure of class C beta-lactamase Mox-1
Descriptor: ACETATE ION, Beta-lactamase, ZINC ION
Authors:Shimizu-ibuka, A, Oguri, T, Furuyama, T, Ishii, Y.
Deposit date:2013-03-15
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Mox-1, a unique plasmid-mediated class C beta-lactamase with hydrolytic activity towards moxalactam
Antimicrob.Agents Chemother., 58, 2014
1IYO
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BU of 1iyo by Molmil
Toho-1 beta-Lactamase In Complex With Cefotaxime
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H.
Deposit date:2002-09-04
Release date:2002-12-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin.
J.Biol.Chem., 277, 2002
1IYQ
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BU of 1iyq by Molmil
Toho-1 beta-Lactamase In Complex With Benzylpenicillin
Descriptor: OPEN FORM - PENICILLIN G, SULFATE ION, Toho-1 beta-lactamase
Authors:Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H.
Deposit date:2002-09-04
Release date:2002-12-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin.
J.Biol.Chem., 277, 2002
1IYP
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BU of 1iyp by Molmil
Toho-1 beta-Lactamase In Complex With Cephalothin
Descriptor: CEPHALOTHIN GROUP, SULFATE ION, Toho-1 beta-lactamase
Authors:Shimamura, T, Ibuka, A, Fushinobu, S, Wakagi, T, Ishiguro, M, Ishii, Y, Matsuzawa, H.
Deposit date:2002-09-04
Release date:2002-12-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Acyl-intermediate Structures of the Extended-spectrum Class A beta -Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin.
J.Biol.Chem., 277, 2002
2D04
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BU of 2d04 by Molmil
Crystal structure of neoculin, a sweet protein with taste-modifying activity.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Curculin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Shimizu-Ibuka, A, Morita, Y, Terada, T, Asakura, T, Nakajima, K, Iwata, S, Misaka, T, Sorimachi, H, Arai, S, Abe, K.
Deposit date:2005-07-25
Release date:2006-06-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Crystal structure of neoculin: insights into its sweetness and taste-modifying activity
J.Mol.Biol., 359, 2006
2E28
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BU of 2e28 by Molmil
Crystal structure analysis of pyruvate kinase from Bacillus stearothermophilus
Descriptor: Pyruvate kinase, SULFATE ION
Authors:Suzuki, K.
Deposit date:2006-11-09
Release date:2008-02-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of pyruvate kinase from Geobacillus stearothermophilus.
J.Biochem., 144, 2008

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