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2AU3
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BU of 2au3 by Molmil
Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
Descriptor: DNA primase, ZINC ION
Authors:Corn, J.E, Pease, P.J, Hura, G.L, Berger, J.M.
Deposit date:2005-08-26
Release date:2005-11-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crosstalk between primase subunits can act to regulate primer synthesis in trans.
Mol.Cell, 20, 2005
3HM3
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BU of 3hm3 by Molmil
The Structure and conformation of Lys-63 linked tetra-ubiquitin
Descriptor: Ubiquitin, ZINC ION
Authors:Datta, A.B, Hura, G.L, Wolberger, C.
Deposit date:2009-05-28
Release date:2009-08-25
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The structure and conformation of Lys63-linked tetraubiquitin.
J.Mol.Biol., 392, 2009
5T5X
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BU of 5t5x by Molmil
High resolution structure of mouse Cryptochrome 1
Descriptor: CHLORIDE ION, Cryptochrome-1
Authors:Michael, A.K, Tripathi, S, Partch, C.L.
Deposit date:2016-08-31
Release date:2017-02-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4WHV
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BU of 4whv by Molmil
E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiquitin-B
Descriptor: E3 ubiquitin-protein ligase RNF8, Polyubiquitin-B, Ubiquitin-conjugating enzyme E2 N, ...
Authors:Hodge, C.D, Edwards, R.A, Glover, J.N.M.
Deposit date:2014-09-23
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (8.3 Å)
Cite:RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment.
J.Biol.Chem., 291, 2016
6XIP
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BU of 6xip by Molmil
The 1.5 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS CoV-2
Descriptor: 1,2-ETHANEDIOL, Non-structural protein 7, Non-structural protein 8
Authors:Wilamowski, M, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-06-20
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication.
Biophys.J., 120, 2021
8SZZ
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BU of 8szz by Molmil
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Descriptor: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
Authors:Weidle, C, Borst, A.
Deposit date:2023-05-30
Release date:2023-11-01
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8FAR
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BU of 8far by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: I432-1-CC
Authors:Bera, A.K, Li, Z, Baker, D.
Deposit date:2022-11-28
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.66 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
3POM
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BU of 3pom by Molmil
Crystal Structure of the Unliganded Retinoblastoma Protein Pocket Domain
Descriptor: Retinoblastoma-associated protein
Authors:Balog, E.R.M, Burke, J.R, Rubin, S.M.
Deposit date:2010-11-23
Release date:2011-04-27
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the unliganded retinoblastoma protein pocket domain.
Proteins, 79, 2011
4QCC
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BU of 4qcc by Molmil
Structure of a cube-shaped, highly porous protein cage designed by fusing symmetric oligomeric domains
Descriptor: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-prolyl cis-trans isomerase chimera
Authors:Lai, Y.-T, Yeates, T.O.
Deposit date:2014-05-10
Release date:2014-11-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (7.078 Å)
Cite:Structure of a designed protein cage that self-assembles into a highly porous cube.
Nat Chem, 6, 2014
3BJI
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BU of 3bji by Molmil
Structural Basis of Promiscuous Guanine Nucleotide Exchange by the T-Cell Essential Vav1
Descriptor: Proto-oncogene vav, Ras-related C3 botulinum toxin substrate 1 precursor, ZINC ION
Authors:Chrencik, J.E, Brooun, A, Kuhn, P, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)
Deposit date:2007-12-04
Release date:2008-07-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1.
J.Mol.Biol., 380, 2008
6WIQ
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BU of 6wiq by Molmil
Crystal structure of the co-factor complex of NSP7 and the C-terminal domain of NSP8 from SARS CoV-2
Descriptor: Non-structural protein 7, Non-structural protein 8
Authors:Wilamowski, M, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-04-10
Release date:2020-04-22
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication.
Biophys.J., 120, 2021
6WQD
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BU of 6wqd by Molmil
The 1.95 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS-CoV-2
Descriptor: 1,2-ETHANEDIOL, Non-structural protein 7, Non-structural protein 8
Authors:Kim, Y, Wilamowski, M, Jedrzejczak, R, Maltseva, N, Endres, M, Godzik, A, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-04-28
Release date:2020-05-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication.
Biophys.J., 120, 2021
5KVH
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BU of 5kvh by Molmil
Crystal structure of human apoptosis-inducing factor with W196A mutation
Descriptor: Apoptosis-inducing factor 1, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Brosey, C.A, Nix, J, Ellenberger, T, Tainer, J.A.
Deposit date:2016-07-14
Release date:2016-11-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.273 Å)
Cite:Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor.
Structure, 24, 2016
5KVI
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BU of 5kvi by Molmil
Crystal structure of monomeric human apoptosis-inducing factor with E413A/R422A/R430A mutations
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Apoptosis-inducing factor 1, mitochondrial, ...
Authors:Brosey, C.A, Nix, J, Ellenberger, T, Tainer, J.A.
Deposit date:2016-07-14
Release date:2016-11-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.995 Å)
Cite:Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor.
Structure, 24, 2016
4ILT
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BU of 4ilt by Molmil
Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium Streptomyces sp. SirexAA-E
Descriptor: CHLORIDE ION, FE (III) ION, Intradiol ring-cleavage dioxygenase
Authors:Bianchetti, C.M, Takasuka, T.E, Bergeman, L.F, Harmann, C.H, Fox, B.G.
Deposit date:2012-12-31
Release date:2013-05-15
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E.
J.Biol.Chem., 288, 2013
4ILV
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BU of 4ilv by Molmil
Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium Streptomyces sp. SirexAA-E
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Intradiol ring-cleavage dioxygenase
Authors:Bianchetti, C.M, Takasuka, T.E, Bergeman, L.F, Harmann, C.H, Fox, B.G.
Deposit date:2013-01-01
Release date:2013-05-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E.
J.Biol.Chem., 288, 2013
4ELL
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BU of 4ell by Molmil
Structure of the inactive retinoblastoma protein pocket domain
Descriptor: Retinoblastoma-associated protein
Authors:Burke, J.R, Rubin, S.M.
Deposit date:2012-04-10
Release date:2012-05-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control.
Genes Dev., 26, 2012
4ELJ
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BU of 4elj by Molmil
Crystal structure of the inactive retinoblastoma protein phosphorylated at T373
Descriptor: Retinoblastoma-associated protein
Authors:Burke, J.R, Rubin, S.M.
Deposit date:2012-04-10
Release date:2012-05-23
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control.
Genes Dev., 26, 2012
3EC3
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BU of 3ec3 by Molmil
Crystal structure of the bb fragment of ERp72
Descriptor: Protein disulfide-isomerase A4
Authors:Kozlov, G, Gehring, K.
Deposit date:2008-08-28
Release date:2009-04-14
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structure of the Noncatalytic Domains and Global Fold of the Protein Disulfide Isomerase ERp72.
Structure, 17, 2009
3F7K
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BU of 3f7k by Molmil
X-ray Crystal Structure of an Alvinella pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex
Descriptor: COPPER (I) ION, COPPER (II) ION, Copper,Zinc Superoxide Dismutase, ...
Authors:Shin, D.S, DiDonato, M, Barondeau, D.P, Getzoff, E.D, Tainer, J.A.
Deposit date:2008-11-09
Release date:2009-02-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
J.Mol.Biol., 385, 2009
3F7L
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BU of 3f7l by Molmil
X-ray Crystal Structure of Alvinella pompejana Cu,Zn Superoxide Dismutase
Descriptor: ACETIC ACID, COPPER (I) ION, COPPER (II) ION, ...
Authors:Shin, D.S, DiDonato, M, Barondeau, D.P, Getzoff, E.D, Tainer, J.A.
Deposit date:2008-11-09
Release date:2009-02-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
J.Mol.Biol., 385, 2009
7Z3F
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BU of 7z3f by Molmil
Crystal structure of the cupredoxin AcoP from Acidithiobacillus ferrooxidans, oxidized form
Descriptor: ACETATE ION, AcoP, CHLORIDE ION, ...
Authors:Leone, P, Sciara, G, Ilbert, M.
Deposit date:2022-03-02
Release date:2023-09-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Beyond the coupled distortion model: structural analysis of the single domain cupredoxin AcoP, a green mononuclear copper centre with original features.
Dalton Trans, 53, 2024
7Z3G
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BU of 7z3g by Molmil
Crystal structure of the cupredoxin AcoP from Acidithiobacillus ferrooxidans, H166A mutant
Descriptor: AcoP, COPPER (I) ION, GLYCEROL
Authors:Leone, P, Sciara, G, Ilbert, M.
Deposit date:2022-03-02
Release date:2023-09-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Beyond the coupled distortion model: structural analysis of the single domain cupredoxin AcoP, a green mononuclear copper centre with original features.
Dalton Trans, 53, 2024
7Z3B
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BU of 7z3b by Molmil
Crystal structure of the cupredoxin AcoP from Acidithiobacillus ferrooxidans, reduced form
Descriptor: ACETATE ION, AcoP, COPPER (I) ION, ...
Authors:Leone, P, Sciara, G, Ilbert, M.
Deposit date:2022-03-02
Release date:2023-09-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Beyond the coupled distortion model: structural analysis of the single domain cupredoxin AcoP, a green mononuclear copper centre with original features.
Dalton Trans, 53, 2024
7Z3I
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BU of 7z3i by Molmil
Crystal structure of the cupredoxin AcoP from Acidithiobacillus ferrooxidans, M171A mutant
Descriptor: ACETATE ION, AcoP, COPPER (II) ION, ...
Authors:Leone, P, Sciara, G, Ilbert, M.
Deposit date:2022-03-02
Release date:2023-09-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Beyond the coupled distortion model: structural analysis of the single domain cupredoxin AcoP, a green mononuclear copper centre with original features.
Dalton Trans, 53, 2024

 

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