Author results

1G12
  • Download 1g12
  • View 1g12
Molmil generated image of 1g12
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor:PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION
Authors:Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.
Deposit date:2000-10-10
Release date:2001-03-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1GE5
  • Download 1ge5
  • View 1ge5
Molmil generated image of 1ge5
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor:PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION
Authors:Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.
Deposit date:2000-10-11
Release date:2001-03-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1GE6
  • Download 1ge6
  • View 1ge6
Molmil generated image of 1ge6
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor:PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION
Authors:Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.
Deposit date:2000-10-11
Release date:2001-03-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1GE7
  • Download 1ge7
  • View 1ge7
Molmil generated image of 1ge7
ZINC PEPTIDASE FROM GRIFOLA FRONDOSA
Descriptor:PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION
Authors:Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.
Deposit date:2000-10-11
Release date:2001-03-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
1V3T
  • Download 1v3t
  • View 1v3t
Molmil generated image of 1v3t
CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE
Descriptor:leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
1V3U
  • Download 1v3u
  • View 1v3u
Molmil generated image of 1v3u
CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE IN APO FORM
Descriptor:leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, CHLORIDE ION
Authors:Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-05
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
1V3V
  • Download 1v3v
  • View 1v3v
Molmil generated image of 1v3v
CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE COMPLEXED WITH NADP AND 15-OXO-PGE2
Descriptor:leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-06
Release date:2004-07-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
2DM6
  • Download 2dm6
  • View 2dm6
Molmil generated image of 2dm6
CRYSTAL STRUCTURE OF ANTI-CONFIGURATION OF INDOMETHACIN AND LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE COMPLEX
Descriptor:NADP-dependent leukotriene B4 12-hydroxydehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, INDOMETHACIN, ...
Authors:Hori, T., Ishijima, J., Yokomizo, T., Ago, H., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-20
Release date:2006-11-28
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex reveals the structural basis of broad spectrum indomethacin efficacy
J.Biochem.(Tokyo), 140, 2006
5X33
  • Download 5x33
  • View 5x33
Molmil generated image of 5x33
LEUKOTRIENE B4 RECEPTOR BLT1 IN COMPLEX WITH BIIL260
Descriptor:LTB4 receptor,Lysozyme,LTB4 receptor, 4-[[3-[[4-[2-(4-hydroxyphenyl)propan-2-yl]phenoxy]methyl]phenyl]methoxy]benzenecarboximidamide
Authors:Hori, T., Hirata, K., Yamashita, K., Kawano, Y., Yamamoto, M., Yokoyama, S.
Deposit date:2017-02-03
Release date:2018-01-03
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Na+-mimicking ligands stabilize the inactive state of leukotriene B4receptor BLT1.
Nat. Chem. Biol., 14, 2018
3B0B
  • Download 3b0b
  • View 3b0b
Molmil generated image of 3b0b
CRYSTAL STRUCTURE OF THE CHICKEN CENP-S/CENP-X COMPLEX
Descriptor:Centromere protein S, Centromere protein X
Authors:Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
Deposit date:2011-06-08
Release date:2012-03-07
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
3B0C
  • Download 3b0c
  • View 3b0c
Molmil generated image of 3b0c
CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W COMPLEX, CRYSTAL FORM I
Descriptor:Centromere protein T, Centromere protein W, CITRIC ACID
Authors:Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
Deposit date:2011-06-08
Release date:2012-03-07
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
3B0D
  • Download 3b0d
  • View 3b0d
Molmil generated image of 3b0d
CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W COMPLEX, CRYSTAL FORM II
Descriptor:Centromere protein T, Centromere protein W, CITRIC ACID
Authors:Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
Deposit date:2011-06-08
Release date:2012-03-07
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
3VH5
  • Download 3vh5
  • View 3vh5
Molmil generated image of 3vh5
CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W/CENP-S/CENP-X HETEROTETRAMERIC COMPLEX, CRYSTAL FORM I
Descriptor:CENP-S, CENP-X, CENP-T, ...
Authors:Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
Deposit date:2011-08-23
Release date:2012-03-07
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold
Cell(Cambridge,Mass.), 148, 2012
3VH6
  • Download 3vh6
  • View 3vh6
Molmil generated image of 3vh6
CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W/CENP-S/CENP-X HETEROTETRAMERIC COMPLEX, CRYSTAL FORM II
Descriptor:CENP-S, CENP-X, CENP-T, ...
Authors:Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.
Deposit date:2011-08-23
Release date:2012-03-07
Method:X-RAY DIFFRACTION (3.351 Å)
Cite:CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold
Cell(Cambridge,Mass.), 148, 2012
1ULT
  • Download 1ult
  • View 1ult
Molmil generated image of 1ult
CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8
Descriptor:long chain fatty acid-CoA ligase, CITRIC ACID
Authors:Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-09-16
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural basis of the substrate specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer
J.Biol.Chem., 279, 2004
1V25
  • Download 1v25
  • View 1v25
Molmil generated image of 1v25
CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8
Descriptor:long-chain-fatty-acid-CoA synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-07
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer
J.Biol.Chem., 279, 2004
1V26
  • Download 1v26
  • View 1v26
Molmil generated image of 1v26
CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8
Descriptor:long-chain-fatty-acid-CoA synthetase, MAGNESIUM ION, MYRISTIC ACID, ...
Authors:Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-07
Release date:2004-07-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer
J.Biol.Chem., 279, 2004
3VZ9
  • Download 3vz9
  • View 3vz9
Molmil generated image of 3vz9
CRYSTAL STRUCTURE OF THE CHICKEN SPC24-SPC25 GLOBULAR DOMAIN
Descriptor:Uncharacterized protein, Spc24 protein
Authors:Nishino, T., Fukagawa, T.
Deposit date:2012-10-09
Release date:2013-04-03
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:CENP-T provides a structural platform for outer kinetochore assembly
Embo J., 32, 2013
3VZA
  • Download 3vza
  • View 3vza
Molmil generated image of 3vza
CRYSTAL STRUCTURE OF THE CHICKEN SPC24-SPC25 GLOBULAR DOMAIN IN COMPLEX WITH CENP-T PEPTIDE
Descriptor:Uncharacterized protein, Spc24 protein, Centromere protein T
Authors:Nishino, T., Fukagawa, T.
Deposit date:2012-10-09
Release date:2013-04-03
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:CENP-T provides a structural platform for outer kinetochore assembly
Embo J., 32, 2013
1F88
  • Download 1f88
  • View 1f88
Molmil generated image of 1f88
CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Descriptor:RHODOPSIN, N-ACETYL-D-GLUCOSAMINE, MERCURY (II) ION, ...
Authors:Okada, T., Palczewski, K., Stenkamp, R.E., Miyano, M.
Deposit date:2000-06-29
Release date:2000-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
2ZIY
  • Download 2ziy
  • View 2ziy
Molmil generated image of 2ziy
CRYSTAL STRUCTURE OF SQUID RHODOPSIN
Descriptor:Rhodopsin, RETINAL, PALMITIC ACID
Authors:Miyano, M., Shimamura, T.
Deposit date:2008-02-27
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region
J.Biol.Chem., 283, 2008
5ZWE
  • Download 5zwe
  • View 5zwe
Molmil generated image of 5zwe
COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING A VINYL KETONE GROUP VIA CONJUGATE ADDITION REACTION
Descriptor:Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one
Authors:Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K.
Deposit date:2018-05-15
Release date:2018-07-18
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
5ZWF
  • Download 5zwf
  • View 5zwf
Molmil generated image of 5zwf
COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING A ENONE WITH A BETA METHYL GROUP VIA CONJUGATE ADDITION REACTION
Descriptor:Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (E,7R)-7-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-2-en-4-one
Authors:Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K.
Deposit date:2018-05-15
Release date:2018-07-18
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
5ZWH
  • Download 5zwh
  • View 5zwh
Molmil generated image of 5zwh
COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING AN ENE-YNONE GROUP VIA CONJUGATE ADDITION REACTION
Descriptor:Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one, ...
Authors:Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K.
Deposit date:2018-05-15
Release date:2018-07-18
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
5ZWI
  • Download 5zwi
  • View 5zwi
Molmil generated image of 5zwi
INTERACTION BETWEEN VITAMIN D RECEPTOR (VDR) AND A LIGAND HAVING A DIENONE GROUP
Descriptor:Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one
Authors:Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K.
Deposit date:2018-05-15
Release date:2018-07-18
Last modified:2018-08-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
<12>