1G12 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | Descriptor: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION | | Authors: | Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K. | | Deposit date: | 2000-10-10 | | Release date: | 2001-03-14 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
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1GE5 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | Descriptor: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION | | Authors: | Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K. | | Deposit date: | 2000-10-11 | | Release date: | 2001-03-14 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
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1GE6 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | Descriptor: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION | | Authors: | Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K. | | Deposit date: | 2000-10-11 | | Release date: | 2001-03-14 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
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1GE7 | | ZINC PEPTIDASE FROM GRIFOLA FRONDOSA | | Descriptor: | PEPTIDYL-LYS METALLOENDOPEPTIDASE, ALPHA-D-MANNOSE, ZINC ION | | Authors: | Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K. | | Deposit date: | 2000-10-11 | | Release date: | 2001-03-14 | | Last modified: | 2017-10-04 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structure of a new 'aspzincin' metalloendopeptidase from Grifola frondosa: implications for the catalytic mechanism and substrate specificity based on several different crystal forms.
Acta Crystallogr.,Sect.D, 57, 2001
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1V3T | | CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE | | Descriptor: | leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | Authors: | Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2003-11-05 | | Release date: | 2004-07-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
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1V3U | | CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE IN APO FORM | | Descriptor: | leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, CHLORIDE ION | | Authors: | Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2003-11-05 | | Release date: | 2004-07-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
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1V3V | | CRYSTAL STRUCTURE OF LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE COMPLEXED WITH NADP AND 15-OXO-PGE2 | | Descriptor: | leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | | Authors: | Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2003-11-06 | | Release date: | 2004-07-13 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop
J.Biol.Chem., 279, 2004
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2DM6 | | CRYSTAL STRUCTURE OF ANTI-CONFIGURATION OF INDOMETHACIN AND LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE/15-OXO-PROSTAGLANDIN 13-REDUCTASE COMPLEX | | Descriptor: | NADP-dependent leukotriene B4 12-hydroxydehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, INDOMETHACIN, ... | | Authors: | Hori, T., Ishijima, J., Yokomizo, T., Ago, H., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2006-04-20 | | Release date: | 2006-11-28 | | Last modified: | 2017-10-11 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex reveals the structural basis of broad spectrum indomethacin efficacy
J.Biochem.(Tokyo), 140, 2006
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5X33 | | LEUKOTRIENE B4 RECEPTOR BLT1 IN COMPLEX WITH BIIL260 | | Descriptor: | LTB4 receptor,Lysozyme,LTB4 receptor, 4-[[3-[[4-[2-(4-hydroxyphenyl)propan-2-yl]phenoxy]methyl]phenyl]methoxy]benzenecarboximidamide | | Authors: | Hori, T., Hirata, K., Yamashita, K., Kawano, Y., Yamamoto, M., Yokoyama, S. | | Deposit date: | 2017-02-03 | | Release date: | 2018-01-03 | | Last modified: | 2018-04-04 | | Method: | X-RAY DIFFRACTION (3.7 Å) | | Cite: | Na+-mimicking ligands stabilize the inactive state of leukotriene B4receptor BLT1.
Nat. Chem. Biol., 14, 2018
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3B0B | | CRYSTAL STRUCTURE OF THE CHICKEN CENP-S/CENP-X COMPLEX | | Descriptor: | Centromere protein S, Centromere protein X | | Authors: | Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T. | | Deposit date: | 2011-06-08 | | Release date: | 2012-03-07 | | Method: | X-RAY DIFFRACTION (2.15 Å) | | Cite: | CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
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3B0C | | CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W COMPLEX, CRYSTAL FORM I | | Descriptor: | Centromere protein T, Centromere protein W, CITRIC ACID | | Authors: | Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T. | | Deposit date: | 2011-06-08 | | Release date: | 2012-03-07 | | Method: | X-RAY DIFFRACTION (2.201 Å) | | Cite: | CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
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3B0D | | CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W COMPLEX, CRYSTAL FORM II | | Descriptor: | Centromere protein T, Centromere protein W, CITRIC ACID | | Authors: | Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T. | | Deposit date: | 2011-06-08 | | Release date: | 2012-03-07 | | Last modified: | 2017-10-11 | | Method: | X-RAY DIFFRACTION (2.197 Å) | | Cite: | CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Cell(Cambridge,Mass.), 148, 2012
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3VH5 | | CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W/CENP-S/CENP-X HETEROTETRAMERIC COMPLEX, CRYSTAL FORM I | | Descriptor: | CENP-S, CENP-X, CENP-T, ... | | Authors: | Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T. | | Deposit date: | 2011-08-23 | | Release date: | 2012-03-07 | | Method: | X-RAY DIFFRACTION (2.402 Å) | | Cite: | CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold
Cell(Cambridge,Mass.), 148, 2012
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3VH6 | | CRYSTAL STRUCTURE OF THE CHICKEN CENP-T HISTONE FOLD/CENP-W/CENP-S/CENP-X HETEROTETRAMERIC COMPLEX, CRYSTAL FORM II | | Descriptor: | CENP-S, CENP-X, CENP-T, ... | | Authors: | Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T. | | Deposit date: | 2011-08-23 | | Release date: | 2012-03-07 | | Method: | X-RAY DIFFRACTION (3.351 Å) | | Cite: | CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold
Cell(Cambridge,Mass.), 148, 2012
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1ULT | | CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8 | | Descriptor: | long chain fatty acid-CoA ligase, CITRIC ACID | | Authors: | Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2003-09-16 | | Release date: | 2004-07-27 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.55 Å) | | Cite: | Structural basis of the substrate specific two-step catalysis of long chain fatty acyl-CoA synthetase dimer
J.Biol.Chem., 279, 2004
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1V25 | | CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8 | | Descriptor: | long-chain-fatty-acid-CoA synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | | Authors: | Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2003-10-07 | | Release date: | 2004-07-27 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer
J.Biol.Chem., 279, 2004
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1V26 | | CRYSTAL STRUCTURE OF TT0168 FROM THERMUS THERMOPHILUS HB8 | | Descriptor: | long-chain-fatty-acid-CoA synthetase, MAGNESIUM ION, MYRISTIC ACID, ... | | Authors: | Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2003-10-07 | | Release date: | 2004-07-27 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structural Basis of the Substrate-specific Two-step Catalysis of Long Chain Fatty Acyl-CoA Synthetase Dimer
J.Biol.Chem., 279, 2004
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3VZ9 | |
3VZA | |
1F88 | | CRYSTAL STRUCTURE OF BOVINE RHODOPSIN | | Descriptor: | RHODOPSIN, N-ACETYL-D-GLUCOSAMINE, MERCURY (II) ION, ... | | Authors: | Okada, T., Palczewski, K., Stenkamp, R.E., Miyano, M. | | Deposit date: | 2000-06-29 | | Release date: | 2000-08-04 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
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2ZIY | | CRYSTAL STRUCTURE OF SQUID RHODOPSIN | | Descriptor: | Rhodopsin, RETINAL, PALMITIC ACID | | Authors: | Miyano, M., Shimamura, T. | | Deposit date: | 2008-02-27 | | Release date: | 2008-05-06 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (3.7 Å) | | Cite: | Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region
J.Biol.Chem., 283, 2008
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5ZWE | | COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING A VINYL KETONE GROUP VIA CONJUGATE ADDITION REACTION | | Descriptor: | Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one | | Authors: | Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K. | | Deposit date: | 2018-05-15 | | Release date: | 2018-07-18 | | Last modified: | 2018-08-08 | | Method: | X-RAY DIFFRACTION (2.72 Å) | | Cite: | Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
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5ZWF | | COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING A ENONE WITH A BETA METHYL GROUP VIA CONJUGATE ADDITION REACTION | | Descriptor: | Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (E,7R)-7-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-2-en-4-one | | Authors: | Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K. | | Deposit date: | 2018-05-15 | | Release date: | 2018-07-18 | | Last modified: | 2018-08-08 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
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5ZWH | | COVALENT BOND FORMATION BETWEEN HISTIDINE OF VITAMIN D RECEPTOR (VDR) AND A FULL AGONIST HAVING AN ENE-YNONE GROUP VIA CONJUGATE ADDITION REACTION | | Descriptor: | Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one, ... | | Authors: | Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K. | | Deposit date: | 2018-05-15 | | Release date: | 2018-07-18 | | Last modified: | 2018-08-08 | | Method: | X-RAY DIFFRACTION (2.38 Å) | | Cite: | Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
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5ZWI | | INTERACTION BETWEEN VITAMIN D RECEPTOR (VDR) AND A LIGAND HAVING A DIENONE GROUP | | Descriptor: | Vitamin D3 receptor, 13-meric peptide from DRIP205 NR2 BOX peptide, (2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one | | Authors: | Yoshizawa, M., Itoh, T., Anami, Y., Kato, A., Yoshimoto, N., Yamamoto, K. | | Deposit date: | 2018-05-15 | | Release date: | 2018-07-18 | | Last modified: | 2018-08-08 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands
J. Med. Chem., 61, 2018
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