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1VTT
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BU of 1vtt by Molmil
GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)
Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
Authors:Ho, P.S, Frederick, C.A, Quigley, G.J, Van Der Marel, G.A, Van Boom, J.H, Wang, A.H.-J, Rich, A.
Deposit date:1988-08-18
Release date:2011-07-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1 Å)
Cite:GT Wobble Base-Pairing in Z-DNA at 1.0 Angstrom Atomic Resolution: The Crystal Structure of d(CGCGTG)
Embo J., 4, 1985
4GRE
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BU of 4gre by Molmil
DNA holliday junction stabilized by iodine halogen bond. I2J Construct of related reference
Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(IOU)P*CP*GP*G)-3')
Authors:Ho, P.S, Carter, M.
Deposit date:2012-08-24
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GSI
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BU of 4gsi by Molmil
DNA Holliday junction stabilized by fluorine halogen bond. F2J construct of related reference.
Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UFP)P*CP*GP*G)-3')
Authors:Ho, P.S, Carter, M.
Deposit date:2012-08-27
Release date:2013-07-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GS2
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BU of 4gs2 by Molmil
DNA Holliday junction stabilized by iodine halogen bond. I1J construct in related reference.
Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(5IU)P*CP*GP*G)-3')
Authors:Ho, P.S, Carter, M.
Deposit date:2012-08-27
Release date:2013-07-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
4GSG
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BU of 4gsg by Molmil
DNA Holliday junction stabilized by chlorine halogen bond. Cl1J construct of related reference.
Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UCL)P*CP*GP*G)-3')
Authors:Ho, P.S, Carter, M.
Deposit date:2012-08-27
Release date:2013-07-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions.
Biochemistry, 52, 2013
1D40
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BU of 1d40 by Molmil
BASE SPECIFIC BINDING OF COPPER(II) TO Z-DNA: THE 1.3-ANGSTROMS SINGLE CRYSTAL STRUCTURE OF D(M5CGUAM5CG) IN THE PRESENCE OF CUCL2
Descriptor: COPPER (II) CHLORIDE, COPPER (II) ION, DNA (5'-D(*(5CM)P*(CU)GP*UP*AP*(5CM)P*(CU)G)-3')
Authors:Geierstanger, B.H, Kagawa, T.F, Chen, S.-L, Quigley, G.J, Ho, P.S.
Deposit date:1991-05-07
Release date:1992-04-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Base-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2.
J.Biol.Chem., 266, 1991
1D41
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BU of 1d41 by Molmil
STABILIZATION OF Z-DNA BY DEMETHYLATION OF THYMINE BASES: 1.3 ANGSTROMS SINGLE-CRYSTAL STRUCTURE OF D(M5CGUAM5CG)
Descriptor: DNA (5'-D(*(5CM)P*GP*UP*AP*(5CM)P*G)-3'), MAGNESIUM ION
Authors:Zhou, G, Ho, P.S.
Deposit date:1991-05-07
Release date:1992-04-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG).
Biochemistry, 29, 1990
1D39
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BU of 1d39 by Molmil
COVALENT MODIFICATION OF GUANINE BASES IN DOUBLE STRANDED DNA: THE 1.2 ANGSTROMS Z-DNA STRUCTURE OF D(CGCGCG) IN THE PRESENCE OF CUCL2
Descriptor: COPPER (II) ION, DNA (5'-D(*CP*(CU)GP*CP*(CU)GP*CP*(CU)G)-3'), SODIUM ION
Authors:Kagawa, T.F, Geierstanger, B.H, Wang, A.H.-J, Ho, P.S.
Deposit date:1991-05-07
Release date:1992-04-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Covalent modification of guanine bases in double-stranded DNA. The 1.2-A Z-DNA structure of d(CGCGCG) in the presence of CuCl2.
J.Biol.Chem., 266, 1991
1DCV
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BU of 1dcv by Molmil
B-DNA DECAMER WITH CENTRAL TA DINUCLEOTIDE
Descriptor: DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3')
Authors:Eichman, B.F, Vargason, J.M, Mooers, B.H.M, Ho, P.S.
Deposit date:1999-11-05
Release date:2000-04-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA, 97, 2000
1DCW
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BU of 1dcw by Molmil
STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE.
Descriptor: DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'), SODIUM ION
Authors:Eichman, B.F, Vargason, J.M, Mooers, B.H.M, Ho, P.S.
Deposit date:1999-11-05
Release date:2000-04-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
Proc.Natl.Acad.Sci.USA, 97, 2000
1FHZ
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BU of 1fhz by Molmil
PSORALEN CROSS-LINKED D(CCGGTACCGG) FORMS HOLLIDAY JUNCTION
Descriptor: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3')
Authors:Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S.
Deposit date:2000-08-02
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol., 308, 2001
1FHY
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BU of 1fhy by Molmil
PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION
Descriptor: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, CALCIUM ION, DNA (5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3')
Authors:Eichman, B.F, Mooers, B.H.M, Alberti, M, Hearst, J.E, Ho, P.S.
Deposit date:2000-08-02
Release date:2001-04-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol., 308, 2001
1F69
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BU of 1f69 by Molmil
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), MAGNESIUM ION
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-20
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6C
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BU of 1f6c by Molmil
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH SPERMINE
Descriptor: DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), SPERMINE
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6E
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BU of 1f6e by Molmil
CRYSTAL STRUCTURE OF THE A-DNA HEXAMER GGCGM5CC
Descriptor: DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6I
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BU of 1f6i by Molmil
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGM5CC
Descriptor: DNA (5'-D(*GP*GP*CP*GP*(5CM)P*C)-3')
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
1F6J
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BU of 1f6j by Molmil
CRYSTAL STRUCTURE OF THE E-DNA HEXAMER GGCGBR5CC
Descriptor: DNA (5'-D(*GP*GP*CP*GP*(CBR)P*C)-3')
Authors:Vargason, J.M, Eichman, B.F, Ho, P.S.
Deposit date:2000-06-21
Release date:2000-08-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The extended and eccentric E-DNA structure induced by cytosine methylation or bromination.
Nat.Struct.Biol., 7, 2000
254D
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BU of 254d by Molmil
ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA
Descriptor: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*C)-3')
Authors:Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S.
Deposit date:1995-09-29
Release date:1996-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.
J.Mol.Biol., 249, 1995
275D
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BU of 275d by Molmil
ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA
Descriptor: DNA (5'-D(*GP*(5CM)P*CP*GP*GP*C)-3')
Authors:Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S.
Deposit date:1995-09-29
Release date:1996-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.
J.Mol.Biol., 249, 1995
253D
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BU of 253d by Molmil
CRYSTAL STRUCTURE OF THE B-DNA NONAMER D(GCGTACGCG) WITH A NOVEL D[G*(G.C)] BASE-TRIPLET INVOLVING THE MINOR GROOVE
Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Mooers, B.H.M, Ho, P.S.
Deposit date:1996-03-20
Release date:1996-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the B-DNA Nonamer d(GCGTACGCG) with a Novel d[G*(G.C)] Base-triplet Involving the Minor Groove
To be Published, 1996
257D
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BU of 257d by Molmil
ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA
Descriptor: DNA (5'-D(*GP*CP*CP*GP*GP*C)-3')
Authors:Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S.
Deposit date:1996-03-31
Release date:1996-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.
J.Mol.Biol., 249, 1995
256D
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BU of 256d by Molmil
ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA
Descriptor: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*C)-3')
Authors:Mooers, B.H, Schroth, G.P, Baxter, W.W, Ho, P.S.
Deposit date:1996-03-31
Release date:1996-04-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.
J.Mol.Biol., 249, 1995
2B2B
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BU of 2b2b by Molmil
Structural distortions in psoralen cross-linked DNA
Descriptor: 4'-HYDROXYMETHYL-4,5',8-TRIMETHYLPSORALEN, 5'-D(*CP*CP*GP*CP*TP*AP*GP*CP*GP*G)-3', CALCIUM ION, ...
Authors:Hays, F.A, Yonggang, H, Eichman, B.F, Kong, W, Hearst, J, Ho, P.S.
Deposit date:2005-09-19
Release date:2006-10-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural distortions in psoralen cross-linked DNA
To be Published
3TOK
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BU of 3tok by Molmil
Assaying the energies of biological halogen bonds.
Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*TP*CP*GP*G)-3'), SODIUM ION
Authors:Carter, M, Ho, P.S.
Deposit date:2011-09-05
Release date:2012-08-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Assaying the Energies of Biological Halogen Bonds
CRYST.GROWTH DES., 11, 2011
1S1L
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BU of 1s1l by Molmil
Influence of Groove Interactions on the Formation of DNA Holliday Junctions
Descriptor: 5'-D(*CP*CP*(OIP)*GP*TP*AP*CP*(5CM)P*GP*G)-3'
Authors:Hays, F.A, Jones, Z.J, Ho, P.S.
Deposit date:2004-01-06
Release date:2004-08-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Influence of minor groove substituents on the structure of DNA holliday junctions.
Biochemistry, 43, 2004

 

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