Author results

1GD5
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SOLUTION STRUCTURE OF THE PX DOMAIN FROM HUMAN P47PHOX NADPH OXIDASE
Descriptor:NEUTROPHIL CYTOSOL FACTOR 1
Authors:Hiroaki, H., Ago, T., Ito, T., Sumimoto, H., Kohda, D.
Deposit date:2000-09-14
Release date:2001-06-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the PX domain, a target of the SH3 domain.
Nat.Struct.Biol., 8, 2001
2RRM
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INTERPLAY BETWEEN PHOSPHATIDYL-INOSITOL-PHOSPHATES AND CLAUDINS UPON BINDING TO THE 1ST PDZ DOMAIN OF ZONULA OCCLUDENS 1
Descriptor:Tight junction protein ZO-1
Authors:Hiroaki, H., Satomura, K., Goda, N., Umetsu, Y., Taniguchi, R., Ikegami, T., Furuse, M.
Deposit date:2011-01-06
Release date:2011-05-25
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:1H, 13C, and 15N resonance assignment of the first PDZ domain of mouse ZO-1
Biomol.Nmr Assign., 5, 2011
413D
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A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)
Descriptor:RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3')
Authors:Tanaka, Y., Fujii, S., Hiroaki, H., Sakata, T., Tanaka, T., Uesugi, S., Tomita, K.-I., Kyogoku, Y.
Deposit date:1998-07-10
Release date:1998-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Nucleic Acids Res., 27, 1999
2RRE
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STRUCTURE AND FUNCTION OF THE N-TERMINAL NUCLEOLIN BINDING DOMAIN OF NUCLEAR VALOCINE CONTAINING PROTEIN LIKE 2 (NVL2) HARBORING A NUCLEOLAR LOCALIZATION SIGNAL
Descriptor:Putative uncharacterized protein
Authors:Fujiwara, Y., Fujiwara, K., Goda, N., Iwaya, N., Tenno, T., Shirakawa, M., Hiroaki, H.
Deposit date:2010-08-03
Release date:2011-04-06
Last modified:2011-11-23
Method:SOLUTION NMR
Cite:Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal
J.Biol.Chem., 286, 2011
1WR0
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STRUCTURAL CHARACTERIZATION OF THE MIT DOMAIN FROM HUMAN VPS4B
Descriptor:SKD1 protein
Authors:Takasu, H., Jee, J.G., Ohno, A., Goda, N., Fujiwara, K., Tochio, H., Shirakawa, M., Hiroaki, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-07
Release date:2005-08-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization of the MIT domain from human Vps4b
Biochem.Biophys.Res.Commun., 334, 2005
1WR1
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THE COMPLEX STURCTURE OF DSK2P UBA WITH UBIQUITIN
Descriptor:Ubiquitin, Ubiquitin-like protein DSK2
Authors:Ohno, A., Jee, J.G., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Hiroaki, H., kobayashi, H., Shirakawa, M.
Deposit date:2004-10-08
Release date:2005-04-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1WYW
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CRYSTAL STRUCTURE OF SUMO1-CONJUGATED THYMINE DNA GLYCOSYLASE
Descriptor:G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3C, CHLORIDE ION, ...
Authors:Baba, D., Maita, N., Jee, J.G., Uchimura, Y., Saitoh, H., Sugasawa, K., Hanaoka, F., Tochio, H., Hiroaki, H., Shirakawa, M.
Deposit date:2005-02-17
Release date:2005-06-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of thymine DNA glycosylase conjugated to SUMO-1.
Nature, 435, 2005
2D07
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CRYSTAL STRUCTURE OF SUMO-3-MODIFIED THYMINE-DNA GLYCOSYLASE
Descriptor:G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3B
Authors:Baba, D., Maita, N., Jee, J.G., Uchimura, Y., Saitoh, H., Sugasawa, K., Hanaoka, F., Tochio, H., Hiroaki, H., Shirakawa, M.
Deposit date:2005-07-26
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase
J.Mol.Biol., 359, 2006
2D2P
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THE SOLUTION STRUCTURE OF MICELLE-BOUND PEPTIDE
Descriptor:Pituitary adenylate cyclase activating polypeptide-38
Authors:Tateishi, Y., Jee, J.G., Inooka, H., Tochio, H., Hiroaki, H., Shirakawa, M.
Deposit date:2005-09-14
Release date:2006-09-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of micelle-bound peptide
To be Published
2Z5V
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SOLUTION STRUCTURE OF THE TIR DOMAIN OF HUMAN MYD88
Descriptor:Myeloid differentiation primary response protein MyD88
Authors:Ohnishi, H., Tochio, H., Hiroaki, H., Kondo, N., Kato, Z., Shirakawa, M.
Deposit date:2007-07-19
Release date:2008-08-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling.
Proc.Natl.Acad.Sci.USA, 2009
1UEL
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SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPLEXED WITH UBIQUITIN-INTERACTING MOTIF OF PROTEASOME SUBUNIT S5A
Descriptor:UV excision repair protein RAD23 homolog B, 26S proteasome non-ATPase regulatory subunit 4
Authors:Fujiwara, K., Tenno, T., Jee, J.G., Sugasawa, K., Ohki, I., Kojima, C., Tochio, H., Hiroaki, H., Hanaoka, H., Shirakawa, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
2EXD
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THE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF A NFED HOMOLOG FROM PYROCOCCUS HORIKOSHII
Descriptor:nfeD short homolog
Authors:Kuwahara, Y., Ohno, A., Morii, T., Tochio, H., Shirakawa, M., Hiroaki, H.
Deposit date:2005-11-08
Release date:2006-12-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold.
Protein Sci., 17, 2008
2RPA
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THE SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF MICROTUBULE SEVERING ENZYME
Descriptor:Katanin p60 ATPase-containing subunit A1
Authors:Iwaya, N., Kuwahara, Y., Unzai, S., Nagata, T., Tomii, K., Goda, N., Tochio, H., Shirakawa, M., Hiroaki, H.
Deposit date:2008-05-13
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A common substrate recognition mode conserved between katanin P60 and VPS4 governs microtubule severing and membrane skeleton reorganization
J.Biol.Chem., 285, 2010
2RQQ
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STRUCTURE OF C-TERMINAL REGION OF CDT1
Descriptor:DNA replication factor Cdt1
Authors:Jee, J.G., Mizuno, T., Kamada, K., Tochio, H., Hiroaki, H., Hanaoka, F., Shirakawa, M.
Deposit date:2009-10-14
Release date:2010-03-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and mutagenesis studies of the C-terminal region of licensing factor Cdt1 enable the identification of key residues for binding to replicative helicase Mcm proteins
J.Biol.Chem., 285, 2010
3AXA
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CRYSTAL STRUCTURE OF AFADIN PDZ DOMAIN IN COMPLEX WITH THE C-TERMINAL PEPTIDE FROM NECTIN-3
Descriptor:Afadin, Nectin-3
Authors:Fujiwara, Y., Goda, N., Narita, H., Satomura, K., Nakagawa, A., Sakisaka, T., Suzuki, M., Hiroaki, H.
Deposit date:2011-03-31
Release date:2012-04-25
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site.
Protein Sci., 24, 2015
3VQF
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CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-22
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3VQG
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CRYSTAL STRUCTURE ANALYSIS OF THE PDZ DOMAIN DERIVED FROM THE TIGHT JUNCTION REGULATING PROTEIN
Descriptor:E3 ubiquitin-protein ligase LNX, C-terminal peptide from Immunoglobulin superfamily member 5, SULFATE ION
Authors:Akiyoshi, Y., Hamada, D., Goda, N., Tenno, T., Narita, H., Nakagawa, A., Furuse, M., Suzuki, M., Hiroaki, H.
Deposit date:2012-03-23
Release date:2013-03-27
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
1WLF
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STRUCTURE OF THE N-TERMINAL DOMAIN OF PEX1 AAA-ATPASE: CHARACTERIZATION OF A PUTATIVE ADAPTOR-BINDING DOMAIN
Descriptor:Peroxisome biogenesis factor 1, SULFATE ION
Authors:Shiozawa, K., Maita, N., Tomii, K., Seto, A., Goda, N., Tochio, H., Akiyama, Y., Shimizu, T., Shirakawa, M., Hiroaki, H.
Deposit date:2004-06-25
Release date:2004-09-07
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of the N-terminal Domain of PEX1 AAA-ATPase: CHARACTERIZATION OF A PUTATIVE ADAPTOR-BINDING DOMAIN
J.Biol.Chem., 279, 2004
2RPB
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THE SOLUTION STRUCTURE OF MEMBRANE PROTEIN
Descriptor:hypothetical membrane protein
Authors:Kuwahara, Y., Unzai, S., Nagata, T., Hiroaki, H.
Deposit date:2008-05-13
Release date:2009-05-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The solution structure of membrane protein
To be Published
2RRH
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NMR STRUCTURE OF VASOACTIVE INTESTINAL PEPTIDE IN METHANOL
Descriptor:VIP peptides
Authors:Umetsu, Y., Tenno, T., Goda, N., Ikegami, T., Hiroaki, H.
Deposit date:2010-11-12
Release date:2011-04-06
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural difference of vasoactive intestinal peptide in two distinct membrane mimicking environments
Biochem.Biophys.Acta Proteins & Proteomics, 2011
2RRI
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NMR STRUCTURE OF VASOACTIVE INTESTINAL PEPTIDE IN DPC MICELLE
Descriptor:Vasoactive intestinal peptide
Authors:Umetsu, Y., Tenno, T., Goda, N., Shirakawa, M., Ikegami, T., Hiroaki, H.
Deposit date:2010-12-21
Release date:2011-04-06
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments
Biochim.Biophys.Acta, 1814, 2011
3L3F
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CRYSTAL STRUCTURE OF A PFU-PUL DOMAIN PAIR OF SACCHAROMYCES CEREVISIAE DOA1/UFD3
Descriptor:Protein DOA1
Authors:Komori, H., Nishimasu, R., Kuno, T., Higuchi, Y.
Deposit date:2009-12-16
Release date:2010-11-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a PFU-PUL Domain Pair of Saccharomyces Cerevisiae Doa1/Ufd3
KOBE J.MED.SCI., 56, 2010
1H6H
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STRUCTURE OF THE PX DOMAIN FROM P40PHOX BOUND TO PHOSPHATIDYLINOSITOL 3-PHOSPHATE
Descriptor:NEUTROPHIL CYTOSOL FACTOR 4, 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE, GLYCEROL
Authors:Karathanassis, D., Bravo, J., Pacold, M., Perisic, O., Williams, R.L.
Deposit date:2001-06-15
Release date:2001-11-01
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Crystal Structure of the Px Domain from P40Phox Bound to Phosphatidylinositol 3-Phosphate
Mol.Cell, 8, 2001