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4XFP
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BU of 4xfp by Molmil
Crystal Structure of Highly Active Mutant of Bacillus sp. TB-90 Urate Oxidase
Descriptor: 8-AZAXANTHINE, CHLORIDE ION, SULFATE ION, ...
Authors:Hibi, T, Hayashi, Y, Kawamura, A, Itoh, T.
Deposit date:2014-12-28
Release date:2016-01-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Glycine Substitution of Surface Proline 287 Involves Entropic Enhancement of Bacillus sp. TB-90 Uricase Activity
To be published
7CMQ
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BU of 7cmq by Molmil
Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 88% RH.
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2020-07-28
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
To be published
5AYJ
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BU of 5ayj by Molmil
Hyperthermostable mutant of Bacillus sp. TB-90 Urate Oxidase - R298C
Descriptor: 9-METHYL URIC ACID, HEXAETHYLENE GLYCOL, SULFATE ION, ...
Authors:Hibi, T, Kume, A, Kawamura, A, Itoh, T, Nishiya, Y.
Deposit date:2015-08-21
Release date:2016-01-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Hyperstabilization of Tetrameric Bacillus sp. TB-90 Urate Oxidase by Introducing Disulfide Bonds through Structural Plasticity
Biochemistry, 55, 2016
7CUF
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BU of 7cuf by Molmil
Crystal Structure of Urate Oxidase from Bacillus sp. TB-90 in the absence from Chloride Anion at 1.44 A resolution
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T.
Deposit date:2020-08-22
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity.
J.Biochem., 169, 2021
7CUG
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BU of 7cug by Molmil
Crystal Structure of Urate Oxidase from Bacillus sp. TB-90 in the absence from Chloride Anion at 1.62 A resolution
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T.
Deposit date:2020-08-23
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity.
J.Biochem., 169, 2021
1J2G
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BU of 1j2g by Molmil
Crystal structure of Urate oxidase from Bacillus SP. TB-90 co-crystallized with 8-Azaxanthine
Descriptor: 8-AZAXANTHINE, SULFATE ION, Uricase
Authors:Hibi, T, Nago, T, Nishiya, Y, Oda, J.
Deposit date:2003-01-05
Release date:2004-06-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of urate oxidase from Bacillus SP.
To be Published
1V4G
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BU of 1v4g by Molmil
Crystal Structure of gamma-Glutamylcysteine Synthetase from Escherichia coli B
Descriptor: Glutamate--cysteine ligase
Authors:Hibi, T, Nii, H, Nakatsu, T, Kato, H, Hiratake, J, Oda, J.
Deposit date:2003-11-13
Release date:2004-10-05
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VA6
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BU of 1va6 by Molmil
Crystal structure of Gamma-glutamylcysteine synthetase from Escherichia Coli B complexed with Transition-state analogue
Descriptor: (2S)-2-AMINO-4-[[(2R)-2-CARBOXYBUTYL](PHOSPHONO)SULFONIMIDOYL]BUTANOIC ACID, ADENOSINE-5'-DIPHOSPHATE, Glutamate--cysteine ligase, ...
Authors:Hibi, T, Nii, H, Nakatsu, T, Kato, H, Hiratake, J, Oda, J.
Deposit date:2004-02-12
Release date:2004-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
2D32
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BU of 2d32 by Molmil
Crystal Structure of Michaelis Complex of gamma-Glutamylcysteine Synthetase
Descriptor: CYSTEINE, GLUTAMIC ACID, Glutamate--cysteine ligase, ...
Authors:Hibi, T, Nakayama, M, Nii, H, Kurokawa, Y, Katano, H, Oda, J.
Deposit date:2005-09-25
Release date:2006-11-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of efficient coupling peptide ligation and ATP hydrolysis by gamma-gluatamylcysteine synthetase
To be Published
2D33
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BU of 2d33 by Molmil
Crystal Structure of gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CYSTEINE, ...
Authors:Hibi, T, Nakayama, M, Nii, H, Kurokawa, Y, Katano, H, Oda, J.
Deposit date:2005-09-25
Release date:2006-11-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of efficient coupling between peptide ligation and ATP hydrolysis by gamma-gluatamylcysteine synthetase
To be Published
5YJ2
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BU of 5yj2 by Molmil
Crystal structure of Bacillus sp. TB-90 urate oxidase without dehydration
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2017-10-07
Release date:2018-10-10
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of Bacillus sp. TB-90 urate oxidase without dehydration
To Be Published
5YJA
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BU of 5yja by Molmil
Crystal structure of highly active BTUO mutant P287G without dehydration
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2017-10-09
Release date:2018-10-10
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
5Z2B
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BU of 5z2b by Molmil
Crystal structure of highly active BTUO mutant P287G Improved by Humidity Control at 86% RH
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2018-01-02
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
5Z27
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BU of 5z27 by Molmil
Crystal structure of highly active BTUO mutant P287G without dehydration
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2017-12-29
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
7CMN
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BU of 7cmn by Molmil
Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 88% RH.
Descriptor: 1,2-ETHANEDIOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T, Nishiya, Y.
Deposit date:2020-07-28
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
To be published
7CUC
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BU of 7cuc by Molmil
Crystal Structure of Urate Oxidase from Bacillus sp. TB-90 in the absence from Chloride Anion at 1.44 A resolution
Descriptor: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T, Itoh, T.
Deposit date:2020-08-22
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity.
J.Biochem., 169, 2021
3WLV
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BU of 3wlv by Molmil
Thermostable urate oxidase from Bacillus sp. TB-90
Descriptor: 8-AZAXANTHINE, CHLORIDE ION, POTASSIUM ION, ...
Authors:Hibi, T, Hayashi, Y, Itoh, T.
Deposit date:2013-11-14
Release date:2014-06-18
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Intersubunit salt bridges with a sulfate anion control subunit dissociation and thermal stabilization of Bacillus sp. TB-90 urate oxidase.
Biochemistry, 53, 2014
5ZJG
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BU of 5zjg by Molmil
Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with Gly-Gly
Descriptor: GLYCEROL, GLYCINE, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 L-subunit, ...
Authors:Hibi, T, Imaoka, M, Itoh, T, Wakayama, M.
Deposit date:2018-03-20
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure analysis and enzymatic characterization of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biosci. Biotechnol. Biochem., 83, 2019
7D9W
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BU of 7d9w by Molmil
Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON
Descriptor: 6-DIAZENYL-5-OXO-L-NORLEUCINE, GLYCINE, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03
Authors:Hibi, T, Sano, C, Putthapong, P, Hayashi, J, Itoh, T, Wakayama, M.
Deposit date:2020-10-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
7D9X
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BU of 7d9x by Molmil
Highly active mutant W525D of Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens
Descriptor: GAMMA-BUTYROLACTONE, GLYCEROL, GLYCINE, ...
Authors:Hibi, T, Sano, C, Itoh, T, Wakayama, M.
Deposit date:2020-10-14
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
7D9E
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BU of 7d9e by Molmil
Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON
Descriptor: 6-DIAZENYL-5-OXO-L-NORLEUCINE, GLYCEROL, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03
Authors:Hibi, T, Sano, C, Itoh, T, Wakayama, M.
Deposit date:2020-10-13
Release date:2021-06-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
8W7P
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BU of 8w7p by Molmil
Extracellular domain of a sensor histidine kinase
Descriptor: Extracellular domain of a sensor histidine kinase NagS, GLYCEROL
Authors:Itoh, T, Ogawa, T, Hibi, T, Kimoto, H.
Deposit date:2023-08-31
Release date:2024-01-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Characterization of the extracellular domain of sensor histidine kinase NagS from Paenibacillus sp. str. FPU-7: nagS interacts with oligosaccharide binding protein NagB1 in complexes with N, N'-diacetylchitobiose.
Biosci.Biotechnol.Biochem., 88, 2024
5GZT
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BU of 5gzt by Molmil
Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
Descriptor: Chitinase, FORMIC ACID, PHOSPHATE ION, ...
Authors:Itoh, T, Hibi, T, Suzuki, F, Sugimoto, I, Fujiwara, A, Inaka, K, Tanaka, H, Ohta, K, Fujii, Y, Taketo, A, Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZU
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BU of 5gzu by Molmil
Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
Descriptor: Chitinase, PHOSPHATE ION
Authors:Itoh, T, Hibi, T, Suzuki, F, Sugimoto, I, Fujiwara, A, Inaka, K, Tanaka, H, Ohta, K, Fujii, Y, Taketo, A, Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZV
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BU of 5gzv by Molmil
Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase, PHOSPHATE ION
Authors:Itoh, T, Hibi, T, Suzuki, F, Sugimoto, I, Fujiwara, A, Inaka, K, Tanaka, H, Ohta, K, Fujii, Y, Taketo, A, Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016

 

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