Author results

5YJ2
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CRYSTAL STRUCTURE OF BACILLUS SP. TB-90 URATE OXIDASE WITHOUT DEHYDRATION
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T., Itoh, T., Nishiya, Y.
Deposit date:2017-10-07
Release date:2018-10-10
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of Bacillus sp. TB-90 urate oxidase without dehydration
To Be Published
5YJA
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CRYSTAL STRUCTURE OF HIGHLY ACTIVE BTUO MUTANT P287G WITHOUT DEHYDRATION
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T., Itoh, T., Nishiya, Y.
Deposit date:2017-10-09
Release date:2018-10-10
Last modified:2018-12-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
5Z27
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CRYSTAL STRUCTURE OF HIGHLY ACTIVE BTUO MUTANT P287G WITHOUT DEHYDRATION
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, SULFATE ION, ...
Authors:Hibi, T., Itoh, T., Nishiya, Y.
Deposit date:2017-12-29
Release date:2019-01-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
5Z29
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CRYSTAL STRUCTURE OF BACILLUS SP. TB-90 URATE OXIDASE IMPROVED BY HUMIDITY CONTROL AT 88% RH.
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T., Itoh, T., Nishiya, Y.
Deposit date:2017-12-30
Release date:2019-01-02
Method:X-RAY DIFFRACTION (1.432 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
To be published
5Z2A
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CRYSTAL STRUCTURE OF BACILLUS SP. TB-90 URATE OXIDASE IMPROVED BY HUMIDITY CONTROL AT 86% RH.
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Hibi, T., Itoh, T., Nishiya, Y.
Deposit date:2017-12-31
Release date:2019-01-02
Method:X-RAY DIFFRACTION (1.723 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
To be published
5Z2B
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CRYSTAL STRUCTURE OF HIGHLY ACTIVE BTUO MUTANT P287G IMPROVED BY HUMIDITY CONTROL AT 86% RH
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, SULFATE ION, ...
Authors:Hibi, T., Itoh, T., Nishiya, Y.
Deposit date:2018-01-02
Release date:2019-01-02
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase
to be published
2D32
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CRYSTAL STRUCTURE OF MICHAELIS COMPLEX OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE
Descriptor:Glutamate--cysteine ligase, MAGNESIUM ION, GLUTAMIC ACID, ...
Authors:Hibi, T., Nakayama, M., Nii, H., Kurokawa, Y., Katano, H., Oda, J.
Deposit date:2005-09-25
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of efficient coupling peptide ligation and ATP hydrolysis by gamma-gluatamylcysteine synthetase
To be Published
2D33
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE COMPLEXED WITH ALUMINUM FLUORIDE
Descriptor:Glutamate--cysteine ligase, MAGNESIUM ION, GLUTAMIC ACID, ...
Authors:Hibi, T., Nakayama, M., Nii, H., Kurokawa, Y., Katano, H., Oda, J.
Deposit date:2005-09-25
Release date:2006-11-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of efficient coupling between peptide ligation and ATP hydrolysis by gamma-gluatamylcysteine synthetase
To be Published
4XFP
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CRYSTAL STRUCTURE OF HIGHLY ACTIVE MUTANT OF BACILLUS SP. TB-90 URATE OXIDASE
Descriptor:Urate oxidase, 8-AZAXANTHINE, CHLORIDE ION, ...
Authors:Hibi, T., Hayashi, Y., Kawamura, A., Itoh, T.
Deposit date:2014-12-28
Release date:2016-01-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Glycine Substitution of Surface Proline 287 Involves Entropic Enhancement of Bacillus sp. TB-90 Uricase Activity
To be published
5AYJ
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HYPERTHERMOSTABLE MUTANT OF BACILLUS SP. TB-90 URATE OXIDASE - R298C
Descriptor:Uric acid degradation bifunctional protein, 9-METHYL URIC ACID, HEXAETHYLENE GLYCOL, ...
Authors:Hibi, T., Kume, A., Kawamura, A., Itoh, T., Nishiya, Y.
Deposit date:2015-08-21
Release date:2016-01-20
Last modified:2016-02-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Hyperstabilization of Tetrameric Bacillus sp. TB-90 Urate Oxidase by Introducing Disulfide Bonds through Structural Plasticity
Biochemistry, 55, 2016
1V4G
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE FROM ESCHERICHIA COLI B
Descriptor:Glutamate--cysteine ligase
Authors:Hibi, T., Nii, H., Nakatsu, T., Kato, H., Hiratake, J., Oda, J.
Deposit date:2003-11-13
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
1VA6
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CRYSTAL STRUCTURE OF GAMMA-GLUTAMYLCYSTEINE SYNTHETASE FROM ESCHERICHIA COLI B COMPLEXED WITH TRANSITION-STATE ANALOGUE
Descriptor:Glutamate--cysteine ligase, MAGNESIUM ION, (2S)-2-AMINO-4-[[(2R)-2-CARBOXYBUTYL](PHOSPHONO)SULFONIMIDOYL]BUTANOIC ACID, ...
Authors:Hibi, T., Nii, H., Nakatsu, T., Kato, H., Hiratake, J., Oda, J.
Deposit date:2004-02-12
Release date:2004-10-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis
PROC.NATL.ACAD.SCI.USA, 101, 2004
3WLV
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THERMOSTABLE URATE OXIDASE FROM BACILLUS SP. TB-90
Descriptor:Urate oxidase, 8-AZAXANTHINE, SULFATE ION, ...
Authors:Hibi, T., Hayashi, Y., Itoh, T.
Deposit date:2013-11-14
Release date:2014-06-18
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Intersubunit Salt Bridges with a Sulfate Anion Control Subunit Dissociation and Thermal Stabilization of Bacillus sp. TB-90 Urate Oxidase
Biochemistry, 2014
1J2G
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CRYSTAL STRUCTURE OF URATE OXIDASE FROM BACILLUS SP. TB-90 CO-CRYSTALLIZED WITH 8-AZAXANTHINE
Descriptor:Uricase, SULFATE ION, 8-AZAXANTHINE
Authors:Hibi, T., Nago, T., Nishiya, Y., Oda, J.
Deposit date:2003-01-05
Release date:2004-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of urate oxidase from Bacillus SP.
To be Published
5ZJG
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GAMMA-GLUTAMYLTRANSPEPTIDASE FROM PSEUDOMONAS NITROREDUCENS COMPLEXED WITH GLY-GLY
Descriptor:Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 L-subunit, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 S-subunit, GLYCINE, ...
Authors:Hibi, T., Imaoka, M., Itoh, T., Wakayama, M.
Deposit date:2018-03-20
Release date:2019-01-16
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure analysis and enzymatic characterization of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biosci. Biotechnol. Biochem., 83, 2019
3W6S
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YEAST N-ACETYLTRANSFERASE MPR1 INVOLVED IN OXIDATIVE STRESS TOLERANCE VIA PROLINE METABOLISM
Descriptor:MPR1 protein, HEXAETHYLENE GLYCOL, MAGNESIUM ION
Authors:Nasuno, R., Hirano, Y., Itoh, T., Hakoshima, T., Hibi, T., Takagi, H.
Deposit date:2013-02-21
Release date:2013-07-17
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
Proc.Natl.Acad.Sci.USA, 110, 2013
3W6X
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YEAST N-ACETYLTRANSFERASE MPR1 IN COMPLEX WITH CHOP
Descriptor:MPR1 protein, (4S)-4-hydroxy-L-proline, HEXAETHYLENE GLYCOL, ...
Authors:Nasuno, R., Hirano, Y., Itoh, T., Hakoshima, T., Hibi, T., Takagi, H.
Deposit date:2013-02-25
Release date:2013-08-07
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
Proc.Natl.Acad.Sci.USA, 110, 2013
3W91
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CRYSTAL STRUCTURE OF SEMET-LABELED YEAST N-ACETYLTRANSFERASE MPR1 L87M MUTANT
Descriptor:MPR1 protein
Authors:Nasuno, R., Hirano, Y., Itoh, T., Hakoshima, T., Hibi, T., Takagi, H.
Deposit date:2013-03-23
Release date:2013-07-17
Last modified:2013-08-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional analysis of the yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism
Proc.Natl.Acad.Sci.USA, 110, 2013
5GZT
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, SODIUM ION, PHOSPHATE ION, ...
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2017-01-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZU
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZV
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, N-ACETYL-D-GLUCOSAMINE, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5Y52
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CRYSTAL STRUCTURE OF HIGHLY ACTIVE BTUO MUTANT P287G IMPROVED BY HUMIDITY CONTROL AT 83% RH
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Itoh, T., Kishimoto, T., Nishiya, Y.
Deposit date:2017-08-07
Release date:2018-08-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH
To Be Published
5Y2P
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CRYSTAL STRUCTURE OF BACILLUS SP. TB-90 URATE OXIDASE IMPROVED BY HUMIDITY CONTROL AT 86% RH.
Descriptor:Uric acid degradation bifunctional protein, 8-AZAXANTHINE, OXYGEN MOLECULE, ...
Authors:Itoh, T., Nishiya, Y.
Deposit date:2017-07-26
Release date:2018-08-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformational Flexibility of Plastic Interface Loop Allows Entropic Adaptation of Urate Oxidase to Environmental pH.
To Be Published
2GLT
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STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.
Descriptor:GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K., Yamaguchi, H., Kato, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-05-16
Release date:1995-07-31
Last modified:2014-03-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
1GSH
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STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5
Descriptor:GLUTATHIONE BIOSYNTHETIC LIGASE
Authors:Matsuda, K., Kato, H., Yamaguchi, H., Nishioka, T., Katsube, Y., Oda, J.
Deposit date:1995-05-16
Release date:1996-07-11
Last modified:2014-02-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
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