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2RST
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BU of 2rst by Molmil
NMR structure of the C-terminal domain of EW29
Descriptor: 29-kDa galactose-binding lectin
Authors:Hemmi, H.
Deposit date:2012-05-29
Release date:2013-04-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure and dynamics of the C-terminal domain of R-type lectin from the earthworm Lumbricus terrestris
Febs J., 280, 2013
1G11
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BU of 1g11 by Molmil
TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE
Descriptor: TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR
Authors:Hemmi, H, Studts, J.M, Chae, Y.K, Song, J, Markley, J.L, Fox, B.G.
Deposit date:2000-10-10
Release date:2001-05-09
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry, 40, 2001
1G10
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BU of 1g10 by Molmil
TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE
Descriptor: TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR
Authors:Hemmi, H, Studts, J.M, Chae, Y.K, Song, J, Markley, J.L, Fox, B.G.
Deposit date:2000-10-10
Release date:2001-05-09
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry, 40, 2001
1Y1B
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BU of 1y1b by Molmil
Solution structure of Anemonia elastase inhibitor
Descriptor: Elastase inhibitor
Authors:Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y.
Deposit date:2004-11-18
Release date:2005-07-19
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
1Y1C
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BU of 1y1c by Molmil
Solution structure of Anemonia elastase inhibitor analogue
Descriptor: Elastase inhibitor
Authors:Hemmi, H, Kumazaki, T, Yoshizawa-Kumagaye, K, Nishiuchi, Y, Yoshida, T, Ohkubo, T, Kobayashi, Y.
Deposit date:2004-11-18
Release date:2005-07-19
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Structural and Functional Study of an Anemonia Elastase Inhibitor, a "Nonclassical" Kazal-Type Inhibitor from Anemonia sulcata
Biochemistry, 44, 2005
1IY6
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BU of 1iy6 by Molmil
Solution structure of OMSVP3 variant, P14C/N39C
Descriptor: OMSVP3
Authors:Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY5
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BU of 1iy5 by Molmil
Solution structure of wild type OMSVP3
Descriptor: OMSVP3
Authors:Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
Deposit date:2002-07-23
Release date:2003-03-11
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IW4
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BU of 1iw4 by Molmil
Solution structure of ascidian trypsin inhibitor
Descriptor: trypsin inhibitor
Authors:Hemmi, H, Yoshida, T, Kumazaki, T, Nemoto, N, Hasegawa, J, Nishioka, F, Kyogoku, Y, Yokosawa, H, Kobayashi, Y.
Deposit date:2002-04-19
Release date:2002-08-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of ascidian trypsin inhibitor determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 41, 2002
1IYC
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BU of 1iyc by Molmil
Solution structure of antifungal peptide, scarabaecin
Descriptor: scarabaecin
Authors:Hemmi, H, Ishibashi, J, Tomie, T, Yamakawa, M.
Deposit date:2002-08-05
Release date:2003-06-24
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural Basis for New Pattern of Conserved Amino Acid Residues Related to Chitin-binding in the Antifungal Peptide from the Coconut Rhinoceros Beetle Oryctes rhinoceros
J.BIOL.CHEM., 278, 2003
1KV4
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BU of 1kv4 by Molmil
Solution structure of antibacterial peptide (Moricin)
Descriptor: moricin
Authors:Hemmi, H, Ishibashi, J, Hara, S, Yamakawa, M.
Deposit date:2002-01-25
Release date:2002-05-22
Last modified:2021-11-10
Method:SOLUTION NMR
Cite:Solution structure of moricin, an antibacterial peptide, isolated from the silkworm Bombyx mori.
FEBS Lett., 518, 2002
7BW5
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BU of 7bw5 by Molmil
a new lasso peptide koreensin
Descriptor: lasso peptide koreensin
Authors:Hemmi, H, Kodani, S.
Deposit date:2020-04-13
Release date:2020-09-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Heterologous production of new lasso peptide koreensin based on genome mining.
J Antibiot (Tokyo), 74, 2021
5GVO
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BU of 5gvo by Molmil
Solution NMR structure of a new lasso peptide sphaericin
Descriptor: Uncharacterized protein
Authors:Hemmi, H, Kodani, S, Inoue, Y, Suzuki, M, Dohra, H, Suzuki, T, Ohnishi-Kameyama, M.
Deposit date:2016-09-06
Release date:2017-04-05
Method:SOLUTION NMR
Cite:Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica
Eur.J.Org.Chem., 2017
5ZCN
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BU of 5zcn by Molmil
Solution NMR structure of a new lasso peptide brevunsin
Descriptor: brevunsin
Authors:Hemmi, H, Kodani, S, Miyake, Y, Kaweewan, I, Nakagawa, H.
Deposit date:2018-02-19
Release date:2018-10-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea
J. Ind. Microbiol. Biotechnol., 45, 2018
6AK0
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BU of 6ak0 by Molmil
Solution NMR structure of a new lasso peptide specialicin
Descriptor: CYS-LEU-GLY-VAL-GLY-SER-CYS-VAL-ASP-PHE-ALA-GLY-CYS-GLY-TYR-ALA-VAL-VAL-CYS-PHE-DTR
Authors:Hemmi, H, Kodani, S, Kaweewan, I, Komaki, H.
Deposit date:2018-08-28
Release date:2018-12-05
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Isolation and structure determination of a new lasso peptide specialicin based on genome mining
Bioorg. Med. Chem., 26, 2018
5XM4
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BU of 5xm4 by Molmil
Solution NMR structure of a new lasso peptide subterisin
Descriptor: Uncharacterized protein
Authors:Hemmi, H, Kodani, S, Kuroha, M, Ohnishi-Kameyama, M.
Deposit date:2017-05-12
Release date:2018-03-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Isolation and structure determination of a new lasso peptide subterisin from Sphingomonas subterranea
Tetrahedron Lett., 58, 2017
5GMD
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BU of 5gmd by Molmil
Crystal structure of Sulfolobus solfataricus diphosphomevalonate decarboxylase in complex with ATP-gamma-S
Descriptor: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID, ADENOSINE MONOPHOSPHATE, Diphosphomevalonate decarboxylase, ...
Authors:Unno, H, Hemmi, H, Hattori, A.
Deposit date:2016-07-13
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase
J. Biol. Chem., 292, 2017
5GME
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BU of 5gme by Molmil
Crystal structure of Sulfolobus solfataricus Diphosphomevalonate decarboxylase in complex with ADP
Descriptor: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Unno, H, Hemmi, H, Hattori, A.
Deposit date:2016-07-13
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Single Amino Acid Mutation Converts (R)-5-Diphosphomevalonate Decarboxylase into a Kinase
J. Biol. Chem., 292, 2017
4Z7C
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BU of 4z7c by Molmil
Diphosphomevalonate decarboxylase from the Sulfolobus solfataricus, space group h32
Descriptor: Diphosphomevalonate decarboxylase, GLYCEROL, PHOSPHATE ION, ...
Authors:Unno, H, Hattori, A, Hemmi, H.
Deposit date:2015-04-07
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:In Vivo Formation of the Protein Disulfide Bond That Enhances the Thermostability of Diphosphomevalonate Decarboxylase, an Intracellular Enzyme from the Hyperthermophilic Archaeon Sulfolobus solfataricus
J.Bacteriol., 197, 2015
4Z7Y
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BU of 4z7y by Molmil
diphosphomevalonate decarboxylase from the Sulfolobus solfataricus, space group P21
Descriptor: Diphosphomevalonate decarboxylase, SULFATE ION
Authors:Hattori, A, Unno, H, Hemmi, H.
Deposit date:2015-04-08
Release date:2015-09-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:In Vivo Formation of the Protein Disulfide Bond That Enhances the Thermostability of Diphosphomevalonate Decarboxylase, an Intracellular Enzyme from the Hyperthermophilic Archaeon Sulfolobus solfataricus
J.Bacteriol., 197, 2015
3VKJ
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BU of 3vkj by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase, octameric form
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Isopentenyl-diphosphate delta-isomerase
Authors:Nakatani, H, Goda, S, Unno, H, Nagai, T, Yoshimura, T, Hemmi, H.
Deposit date:2011-11-17
Release date:2012-05-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Substrate-Induced Change in the Quaternary Structure of Type 2 Isopentenyl Diphosphate Isomerase from Sulfolobus shibatae.
J.Bacteriol., 194, 2012
2OGY
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BU of 2ogy by Molmil
Asn199Ala Mutant of the 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase complexed with methyltetrahydrofolate to 2.3 Angstrom resolution
Descriptor: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase, CALCIUM ION
Authors:Doukov, T.I, Drennan, C.L, Hemmi, H, Ragsdale, S.W.
Deposit date:2007-01-09
Release date:2007-01-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and kinetic evidence for an extended hydrogen-bonding network in catalysis of methyl group transfer. Role of an active site asparagine residue in activation of methyl transfer by methyltransferases.
J.Biol.Chem., 282, 2007
2ZRX
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BU of 2zrx by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with FMN and DMAPP.
Descriptor: DIMETHYLALLYL DIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Isopentenyl-diphosphate delta-isomerase, ...
Authors:Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
Deposit date:2008-09-01
Release date:2009-01-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRZ
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Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and DMAPP
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, DIMETHYLALLYL DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, ...
Authors:Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
Deposit date:2008-09-01
Release date:2009-01-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRY
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Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN and IPP.
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, ...
Authors:Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
Deposit date:2008-09-01
Release date:2009-01-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009
2ZRV
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BU of 2zrv by Molmil
Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase in complex with reduced FMN.
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Isopentenyl-diphosphate delta-isomerase
Authors:Unno, H, Yamashita, S, Ikeda, Y, Sekiguchi, S, Yoshida, N, Yoshimura, T, Kusunoki, M, Nakayama, T, Nishino, T, Hemmi, H.
Deposit date:2008-09-01
Release date:2009-01-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase.
J.Biol.Chem., 284, 2009

 

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