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3HP1
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BU of 3hp1 by Molmil
Crystal structure of human dCK R104M/D133A in complex with L-dT and ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase, L-deoxythymidine
Authors:Hazra, S, Lavie, A.
Deposit date:2009-06-03
Release date:2009-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Extending Thymidine Kinase Activity to the Catalytic Repertoire of Human Deoxycytidine Kinase.
Biochemistry, 48, 2009
3KFX
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BU of 3kfx by Molmil
Human dCK complex with 5-Me dC and ADP
Descriptor: 5-METHYL-2'-DEOXYCYTIDINE, ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase
Authors:Hazra, S, Lavie, A.
Deposit date:2009-10-28
Release date:2010-09-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural and kinetic characterization of human deoxycytidine kinase variants able to phosphorylate 5-substituted deoxycytidine and thymidine analogues .
Biochemistry, 49, 2010
3MJR
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BU of 3mjr by Molmil
Human dCK complex with Acyclic Nucleoside
Descriptor: 9-HYROXYETHOXYMETHYLGUANINE, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Hazra, S, Lavie, A.
Deposit date:2010-04-13
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Sugar Ring of the Nucleoside Is Required for Productive Substrate Positioning in the Active Site of Human Deoxycytidine Kinase (dCK): Implications for the Development of dCK-Activated Acyclic Guanine Analogues.
J.Med.Chem., 53, 2010
3QEJ
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BU of 3qej by Molmil
S74E-dCK mutant in complex with UDP
Descriptor: Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Hazra, S, Lavie, A.
Deposit date:2011-01-20
Release date:2011-03-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Post-translational phosphorylation of serine 74 of human deoxycytidine kinase favors the enzyme adopting the open conformation making it competent for nucleoside binding and release.
Biochemistry, 50, 2011
4Q8I
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BU of 4q8i by Molmil
Crystal Structure of beta-lactamase from M.tuberculosis covalently complexed with Tebipenem
Descriptor: (4R,5S)-3-(1-(4,5-dihydrothiazol-2-yl)azetidin-3-ylthio)-5-((2S,3R)-3-hydroxy-1-oxobutan-2-yl)-4-methyl-4,5- dihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Hazra, S, Blanchard, J.
Deposit date:2014-04-27
Release date:2014-08-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Tebipenem, a new carbapenem antibiotic, is a slow substrate that inhibits the beta-lactamase from Mycobacterium tuberculosis.
Biochemistry, 53, 2014
4QHC
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BU of 4qhc by Molmil
Structure of M.Tuberculosis Betalactamase (Blac) with inhibitor having novel mechanism
Descriptor: (3R,6R,7S)-7-[(2R,3aR)-hexahydropyrazolo[1,5-c][1,3]thiazin-2-yl]-6-(hydroxymethyl)-1,4-thiazepane-3-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Hazra, S, Blanchard, J.
Deposit date:2014-05-28
Release date:2015-07-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Kinetic and Structural Characterization of the Interaction of 6-Methylidene Penem 2 with the beta-Lactamase from Mycobacterium tuberculosis.
Biochemistry, 54, 2015
4QB8
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BU of 4qb8 by Molmil
Crystal Structure of beta-lactamase from M.tuberculosis forming Michaelis Menten with Tebipenem
Descriptor: Beta-lactamase, PHOSPHATE ION, TEBIPENEM
Authors:Hazra, S, Blanchard, J.
Deposit date:2014-05-06
Release date:2014-08-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.758 Å)
Cite:Tebipenem, a new carbapenem antibiotic, is a slow substrate that inhibits the beta-lactamase from Mycobacterium tuberculosis.
Biochemistry, 53, 2014
4X6T
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BU of 4x6t by Molmil
M.tuberculosis betalactamase complexed with inhibitor EC19
Descriptor: 3-[(2R)-2-(dihydroxyboranyl)-2-{[(2R)-2-{[(4-ethyl-2,3-dioxo-3,4-dihydropyrazin-1(2H)-yl)carbonyl]amino}-2-(4-hydroxyphenyl)acetyl]amino}ethyl]benzoic acid, Beta-lactamase, PHOSPHATE ION
Authors:Hazra, S.
Deposit date:2014-12-09
Release date:2015-12-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Inhibiting the beta-Lactamase of Mycobacterium tuberculosis (Mtb) with Novel Boronic Acid Transition-State Inhibitors (BATSIs).
ACS Infect Dis, 1, 2015
4JLF
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BU of 4jlf by Molmil
Inhibitor resistant (R220A) substitution in the Mycobacterium tuberculosis beta-lactamase
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Hazra, S, Kurz, S, Blanchard, J, Bonomo, R.
Deposit date:2013-03-12
Release date:2013-10-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Can inhibitor-resistant substitutions in the Mycobacterium tuberculosis beta-Lactamase BlaC lead to clavulanate resistance?: a biochemical rationale for the use of beta-lactam-beta-lactamase inhibitor combinations.
Antimicrob.Agents Chemother., 57, 2013
4HCX
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BU of 4hcx by Molmil
Structure of ICDH-1 from M.tuberculosis complexed with NADPH & Mn2+
Descriptor: CHLORIDE ION, Isocitrate dehydrogenase [NADP], MANGANESE (II) ION, ...
Authors:Hazra, S, Blanchard, J.
Deposit date:2012-10-01
Release date:2013-02-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural, Kinetic and Chemical Mechanism of Isocitrate Dehydrogenase-1 from Mycobacterium tuberculosis.
Biochemistry, 52, 2013
4DF6
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BU of 4df6 by Molmil
Crystal Structure of the inhibitor NXL104 Covalent Adduct with TB B-lactamase
Descriptor: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase, PHOSPHATE ION
Authors:Hazra, S, Blanchard, J.
Deposit date:2012-01-23
Release date:2012-07-18
Last modified:2015-06-03
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:NXL104 irreversibly inhibits the {beta}-lactamase from Mycobacterium tuberculosis.
Biochemistry, 51, 2012
3QEN
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BU of 3qen by Molmil
S74E dCK in complex with 5-bromodeoxycytidine and UDP
Descriptor: 5-bromo-2'-deoxycytidine, Deoxycytidine kinase, URIDINE-5'-DIPHOSPHATE
Authors:Lavie, A, Hazra, S.
Deposit date:2011-01-20
Release date:2011-03-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Post-translational phosphorylation of serine 74 of human deoxycytidine kinase favors the enzyme adopting the open conformation making it competent for nucleoside binding and release.
Biochemistry, 50, 2011
3QEO
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BU of 3qeo by Molmil
S74E-R104M-D133A dCK variant in complex with L-deoxythymidine and UDP
Descriptor: Deoxycytidine kinase, L-deoxythymidine, URIDINE-5'-DIPHOSPHATE
Authors:Lavie, A, Hazra, S.
Deposit date:2011-01-20
Release date:2011-03-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Post-translational phosphorylation of serine 74 of human deoxycytidine kinase favors the enzyme adopting the open conformation making it competent for nucleoside binding and release.
Biochemistry, 50, 2011
4M0D
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BU of 4m0d by Molmil
Crystal structure of MurQ from H.influenzae in apo form
Descriptor: N-acetylmuramic acid 6-phosphate etherase
Authors:Hazra, S, Blanchard, J.
Deposit date:2013-08-01
Release date:2014-02-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.577 Å)
Cite:Structure of MurNAc 6-phosphate hydrolase (MurQ) from Haemophilus influenzae with a bound inhibitor.
Biochemistry, 52, 2013
4LZJ
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BU of 4lzj by Molmil
Crystal Structure of MurQ from H.influenzae with bound inhibitor
Descriptor: 2-(acetylamino)-3-O-[(1R)-1-carboxyethyl]-2-deoxy-6-O-phosphono-D-glucitol, N-acetylmuramic acid 6-phosphate etherase, PHOSPHATE ION
Authors:Hazra, S, Blanchard, J.
Deposit date:2013-07-31
Release date:2014-02-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.405 Å)
Cite:Structure of MurNAc 6-phosphate hydrolase (MurQ) from Haemophilus influenzae with a bound inhibitor.
Biochemistry, 52, 2013
8IX8
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BU of 8ix8 by Molmil
Crystal structure of Class A beta-lactamase BlaA WT - complex with Tebipenem
Descriptor: (4R,5S)-3-(1-(4,5-dihydrothiazol-2-yl)azetidin-3-ylthio)-5-((2S,3R)-3-hydroxy-1-oxobutan-2-yl)-4-methyl-4,5- dihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Bhattacharya, S, Hazra, S.
Deposit date:2023-03-31
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Class A beta-lactamase BlaA WT - complex with Tebipenem
To be published
8IWV
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BU of 8iwv by Molmil
Crystal structure of BlaA-1 APO
Descriptor: Beta-lactamase, PHOSPHATE ION
Authors:Bhattacharya, S, Hazra, S.
Deposit date:2023-03-31
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of BlaA-1 APO
To be published
8IXX
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BU of 8ixx by Molmil
Crystal structure of Class A beta-lactamase BlaA WT - complex with Ertapenem
Descriptor: (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Bhattacharya, S, Hazra, S.
Deposit date:2023-04-03
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Class A beta-lactamase BlaA WT - complex with Ertapenem
To be published
8IY4
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BU of 8iy4 by Molmil
Crystal structure of Class A beta-lactamase BlaA WT - complex with Meropenem
Descriptor: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, PHOSPHATE ION
Authors:Bhattacharya, S, Hazra, S.
Deposit date:2023-04-03
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Class A beta-lactamase BlaA WT - complex with Meropenem
To be published
2NO6
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BU of 2no6 by Molmil
C4S dCK variant of dCK in complex with FTC+ADP
Descriptor: 4-AMINO-5-FLUORO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE, ADENOSINE-5'-DIPHOSPHATE, deoxycytidine kinase
Authors:Sabini, E, Hazra, S, Konrad, M, Burley, S.K, Lavie, A.
Deposit date:2006-10-25
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nonenantioselectivity Property of Human Deoxycytidine Kinase Explained by Structures of the Enzyme in Complex with l- and d-Nucleosides.
J.Med.Chem., 50, 2007
2NO7
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BU of 2no7 by Molmil
C4S dCK variant of dCK in complex with L-dC+ADP
Descriptor: 4-AMINO-1-(2-DEOXY-BETA-L-ERYTHRO-PENTOFURANOSYL)PYRIMIDIN-2(1H)-ONE, ADENOSINE-5'-DIPHOSPHATE, deoxycytidine kinase
Authors:Sabini, E, Hazra, S, Konrad, M, Burley, S.K, Lavie, A.
Deposit date:2006-10-25
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nonenantioselectivity Property of Human Deoxycytidine Kinase Explained by Structures of the Enzyme in Complex with l- and d-Nucleosides.
J.Med.Chem., 50, 2007
2NO0
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BU of 2no0 by Molmil
C4S dCK variant of dCK in complex with gemcitabine+ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Deoxycytidine kinase, GEMCITABINE
Authors:Sabini, E, Hazra, S, Konrad, M, Burley, S.K, Lavie, A.
Deposit date:2006-10-24
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Nonenantioselectivity Property of Human Deoxycytidine Kinase Explained by Structures of the Enzyme in Complex with l- and d-Nucleosides.
J.Med.Chem., 50, 2007
2NO1
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BU of 2no1 by Molmil
C4S dCK variant of dCK in complex with D-dC+ADP
Descriptor: 2'-DEOXYCYTIDINE, ADENOSINE-5'-DIPHOSPHATE, deoxycytidine kinase
Authors:Sabini, E, Hazra, S, Konrad, M, Burley, S.K, Lavie, A.
Deposit date:2006-10-24
Release date:2007-07-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Nonenantioselectivity Property of Human Deoxycytidine Kinase Explained by Structures of the Enzyme in Complex with l- and d-Nucleosides.
J.Med.Chem., 50, 2007
2NO9
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BU of 2no9 by Molmil
The structure of deoxycytidine kinase complexed with troxacitabine and ADP.
Descriptor: 4-AMINO-1-[(2S,4S)-2-(HYDROXYMETHYL)-1,3-DIOXOLAN-4-YL]PYRIMIDIN-2(1H)-ONE, ADENOSINE-5'-DIPHOSPHATE, deoxycytidine kinase
Authors:Sabini, E, Lavie, A.
Deposit date:2006-10-25
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase.
Nucleic Acids Res., 35, 2007
2NOA
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BU of 2noa by Molmil
The structure of deoxycytidine kinase complexed with lamivudine and ADP.
Descriptor: 4-AMINO-1-[(2R,5S)-2-(HYDROXYMETHYL)-1,3-OXATHIOLAN-5-YL]PYRIMIDIN-2(1H)-ONE, ADENOSINE-5'-DIPHOSPHATE, deoxycytidine kinase
Authors:Sabini, E, Lavie, A.
Deposit date:2006-10-25
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase.
Nucleic Acids Res., 35, 2007

 

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