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4DVY
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BU of 4dvy by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
Descriptor: Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Tertiary Structure-Function Analysis Reveals the Pathogenic Signaling Potentiation Mechanism of Helicobacter pylori Oncogenic Effector CagA
Cell Host Microbe, 12, 2012
4DVZ
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BU of 4dvz by Molmil
Crystal structure of the Helicobacter pylori CagA oncoprotein
Descriptor: Cytotoxicity-associated immunodominant antigen
Authors:Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.19 Å)
Cite:Tertiary structure-function analysis reveals the pathogenic signaling potentiation mechanism of Helicobacter pylori oncogenic effector CagA
Cell Host Microbe, 12, 2012
2RU7
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BU of 2ru7 by Molmil
Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein
Descriptor: P16 peptide from Major prion protein, RNA_(5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3')
Authors:Hayashi, T, Oshima, H, Mashima, T, Nagata, T, Katahira, M, Kinoshita, M.
Deposit date:2013-12-24
Release date:2014-05-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition.
Nucleic Acids Res., 42, 2014
2Z97
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BU of 2z97 by Molmil
Crystal Structure of Ferric Cytochrome P450cam Reconstituted with 7-Methyl-7-depropionated Hemin
Descriptor: 7-METHYL-7-DEPROPIONATEHEMIN, CAMPHOR, Cytochrome P450-cam, ...
Authors:Hayashi, T, Harada, K, Sakurai, K, Hirota, S, Shimada, H.
Deposit date:2007-09-18
Release date:2008-09-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A role of the heme-7-propionate side chain in cytochrome P450cam as a gate for regulating the access of water molecules to the substrate-binding site
J.Am.Chem.Soc., 131, 2009
2D6Y
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BU of 2d6y by Molmil
Crystal Structure of transcriptional factor SCO4008 from Streptomyces coelicolor A3(2)
Descriptor: L(+)-TARTARIC ACID, putative tetR family regulatory protein
Authors:Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
Deposit date:2005-11-15
Release date:2006-10-31
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition.
J.Mol.Biol., 425, 2013
2D6C
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BU of 2d6c by Molmil
Crystal structure of myoglobin reconstituted with iron porphycene
Descriptor: IMIDAZOLE, Myoglobin, PORPHYCENE CONTAINING FE
Authors:Hayashi, T, Murata, D, Makino, M, Sugimoto, H, Matsuo, T, Sato, H, Shiro, Y, Hisaeda, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-11-11
Release date:2006-10-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Crystal structure and peroxidase activity of myoglobin reconstituted with iron porphycene
Inorg.Chem., 45, 2006
2DG7
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BU of 2dg7 by Molmil
Crystal structure of the putative transcriptional regulator SCO0337 from Streptomyces coelicolor A3(2)
Descriptor: putative transcriptional regulator
Authors:Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
Deposit date:2006-03-08
Release date:2007-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the putative transcriptional regulator SCO0337 from Streptomyces coelicolor A3(2)
To be Published
2DG8
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BU of 2dg8 by Molmil
Crystal structure of the putative trasncriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
Descriptor: putative tetR-family transcriptional regulatory protein
Authors:Hayashi, T, Watanabe, N, Sakai, N, Tamura, T, Yao, M, Tanaka, I.
Deposit date:2006-03-08
Release date:2007-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Crystal structure of the putative transcriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
To be Published
2DG6
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BU of 2dg6 by Molmil
Crystal structure of the putative transcriptional regulator SCO5550 from Streptomyces coelicolor A3(2)
Descriptor: putative transcriptional regulator
Authors:Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
Deposit date:2006-03-08
Release date:2007-03-13
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape
Biochem. Biophys. Res. Commun., 435, 2013
5L86
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BU of 5l86 by Molmil
engineered ascorbate peroxidise
Descriptor: Ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Hayashi, T, Mittl, P, Hilvert, D.
Deposit date:2016-06-07
Release date:2017-03-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Chemically Programmed Proximal Ligand Enhances the Catalytic Properties of a Heme Enzyme.
J. Am. Chem. Soc., 138, 2016
6G5T
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BU of 6g5t by Molmil
Myoglobin H64V/V68A in the resting state, 1.5 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-30
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6G5A
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BU of 6g5a by Molmil
Heme-carbene complex in myoglobin H64V/V68A containing an N-methylhistidine as the proximal ligand, 1.48 angstrom resolution
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-29
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.483 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6G5B
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BU of 6g5b by Molmil
Heme-carbene complex in myoglobin H64V/V68A containing an N-methylhistidine as the proximal ligand, 1.6 angstrom resolution
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-29
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F17
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BU of 6f17 by Molmil
Structure of Mb NMH H64V, V68A mutant resting state
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F19
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BU of 6f19 by Molmil
Structure of Mb NMH H64V, V68A mutant complex with EDA incubated at room temperature for 5 min
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F1A
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BU of 6f1a by Molmil
Structure of Mb NMH H64V, V68A mutant complex with EDA incubated at room temperature for 20 min
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F18
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BU of 6f18 by Molmil
Structure of Mb NMH H64V, V68A mutant complex with EDA
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
5OJA
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BU of 5oja by Molmil
Structure of MbQ
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hayashi, T, Pott, M, Mori, T, Mittl, P, Green, A, Hivert, D.
Deposit date:2017-07-21
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.347 Å)
Cite:A Noncanonical Proximal Heme Ligand Affords an Efficient Peroxidase in a Globin Fold.
J. Am. Chem. Soc., 140, 2018
5OJB
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BU of 5ojb by Molmil
Structure of MbQ NMH
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hayashi, T, Pott, M, Mori, T, Mittl, P, Green, A, Hivert, D.
Deposit date:2017-07-21
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.543 Å)
Cite:A Noncanonical Proximal Heme Ligand Affords an Efficient Peroxidase in a Globin Fold.
J. Am. Chem. Soc., 140, 2018
5OJC
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BU of 5ojc by Molmil
Structure of MbQ2.1 NMH
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hayashi, T, Pott, M, Mori, T, Mittl, P, Green, A, Hivert, D.
Deposit date:2017-07-21
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A Noncanonical Proximal Heme Ligand Affords an Efficient Peroxidase in a Globin Fold.
J. Am. Chem. Soc., 140, 2018
5OJ9
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BU of 5oj9 by Molmil
Structure of Mb NMH
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hayashi, T, Pott, M, Mori, T, Mittl, P, Green, A, Hivert, D.
Deposit date:2017-07-21
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.483 Å)
Cite:A Noncanonical Proximal Heme Ligand Affords an Efficient Peroxidase in a Globin Fold.
J. Am. Chem. Soc., 140, 2018
6KFQ
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BU of 6kfq by Molmil
Crystal structure of thermophilic rhodopsin from Rubrobacter xylanophilus
Descriptor: RETINAL, Rhodopsin, SULFATE ION, ...
Authors:Suzuki, K, Akiyama, T, Hayashi, T, Yasuda, S, Kanehara, K, Kojima, K, Tanabe, M, Kato, R, Senda, T, Sudo, Y, Kinoshita, M, Murata, T.
Deposit date:2019-07-08
Release date:2020-04-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:How Does a Microbial Rhodopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained?
J.Phys.Chem.B, 124, 2020
3WFT
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BU of 3wft by Molmil
Crystal structure of horse heart myoglobin reconstituted with cobalt(II) tetradehydrocorrin
Descriptor: (1R,19R) cobalt tetradehydrocorrin, (1S,19S) cobalt tetradehydrocorrin, GLYCEROL, ...
Authors:Mizohata, E, Morita, Y, Oohora, K, Hirata, K, Ohbayashi, J, Inoue, T, Hisaeda, Y, Hayashi, T.
Deposit date:2013-07-23
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Co(II)/Co(I) reduction-induced axial histidine-flipping in myoglobin reconstituted with a cobalt tetradehydrocorrin as a methionine synthase model.
Chem.Commun.(Camb.), 50, 2014
3WFU
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BU of 3wfu by Molmil
Crystal structure of horse heart myoglobin reconstituted with cobalt(I) tetradehydrocorrin
Descriptor: (1R,19R) cobalt tetradehydrocorrin, (1S,19S) cobalt tetradehydrocorrin, Myoglobin, ...
Authors:Mizohata, E, Morita, Y, Oohora, K, Hirata, K, Ohbayashi, J, Inoue, T, Hisaeda, Y, Hayashi, T.
Deposit date:2013-07-23
Release date:2014-12-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Co(II)/Co(I) reduction-induced axial histidine-flipping in myoglobin reconstituted with a cobalt tetradehydrocorrin as a methionine synthase model.
Chem.Commun.(Camb.), 50, 2014
8ACV
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BU of 8acv by Molmil
WelO5* bound to Zn(II), Cl, and 2-oxoglutarate
Descriptor: 2-OXOGLUTARIC ACID, ACETATE ION, CHLORIDE ION, ...
Authors:Buller, R, Hueppi, S, Voss, M, Hayashi, T.
Deposit date:2022-07-07
Release date:2022-11-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Enzyme engineering enables inversion of substrate stereopreference of the halogenase WelO5*
Chemcatchem, 2022

 

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