5FB3
 
 | | Structure of glycerophosphate dehydrogenase in complex with NADPH | | Descriptor: | Glycerol-1-phosphate dehydrogenase [NAD(P)+], NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PYROPHOSPHATE, ... | | Authors: | Sakuraba, H, Hayashi, J, Yamamoto, K, Yoneda, K, Ohshima, T. | | Deposit date: | 2015-12-14 | | Release date: | 2016-10-12 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.45 Å) | | Cite: | Unique coenzyme binding mode of hyperthermophilic archaeal sn-glycerol-1-phosphate dehydrogenase from Pyrobaculum calidifontis
Proteins, 84, 2016
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5GZ6
 | | Structure of D-amino acid dehydrogenase in complex with NADPH and 2-keto-6-aminocapronic acid | | Descriptor: | 6-azanyl-2-oxidanylidene-hexanoic acid, ACETATE ION, Meso-diaminopimelate D-dehydrogenase, ... | | Authors: | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | | Deposit date: | 2016-09-26 | | Release date: | 2017-04-12 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.74 Å) | | Cite: | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
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5GZ3
 | | Structure of D-amino acid dehydrogenase in complex with NADP | | Descriptor: | 1,2-ETHANEDIOL, Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | Authors: | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | | Deposit date: | 2016-09-26 | | Release date: | 2017-04-12 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.59 Å) | | Cite: | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
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5GZ1
 | | Structure of substrate/cofactor-free D-amino acid dehydrogenase | | Descriptor: | Meso-diaminopimelate D-dehydrogenase | | Authors: | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | | Deposit date: | 2016-09-26 | | Release date: | 2017-04-12 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.78 Å) | | Cite: | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
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4YSV
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4YSN
 | | Structure of aminoacid racemase in complex with PLP | | Descriptor: | PYRIDOXAL-5'-PHOSPHATE, Putative 4-aminobutyrate aminotransferase | | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | | Deposit date: | 2015-03-17 | | Release date: | 2016-04-20 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.94 Å) | | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri.
Acta Crystallogr D Struct Biol, 73, 2017
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5WYF
 | | Structure of amino acid racemase, 2.12 A | | Descriptor: | CADMIUM ION, Isoleucine 2-epimerase, N-[O-PHOSPHONO-PYRIDOXYL]-ISOLEUCINE | | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | | Deposit date: | 2017-01-12 | | Release date: | 2017-04-19 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.12 Å) | | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri.
Acta Crystallogr D Struct Biol, 73, 2017
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5WYA
 | | Structure of amino acid racemase, 2.65 A | | Descriptor: | (2S,3S)-3-methyl-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid, DIMETHYL SULFOXIDE, Isoleucine 2-epimerase | | Authors: | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | | Deposit date: | 2017-01-11 | | Release date: | 2017-04-19 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2.65 Å) | | Cite: | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri.
Acta Crystallogr D Struct Biol, 73, 2017
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6K0N
 | | Catalytic domain of GH87 alpha-1,3-glucanase in complex with nigerose | | Descriptor: | ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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6K0U
 | | Catalytic domain of GH87 alpha-1,3-glucanase D1068A in complex with tetrasaccharides | | Descriptor: | Alpha-1,3-glucanase, CALCIUM ION, SULFATE ION, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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6K0M
 | | Catalytic domain of GH87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11 | | Descriptor: | Alpha-1,3-glucanase, CALCIUM ION, GLYCEROL, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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6K0Q
 | | Catalytic domain of GH87 alpha-1,3-glucanase D1068A in complex with nigerose | | Descriptor: | ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.564 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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6K0P
 | | Catalytic domain of GH87 alpha-1,3-glucanase D1045A in complex with nigerose | | Descriptor: | ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.424 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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6K0S
 | | Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with nigerose | | Descriptor: | ACETIC ACID, Alpha-1,3-glucanase, CALCIUM ION, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.534 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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6K0V
 | | Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with tetrasaccharides | | Descriptor: | Alpha-1,3-glucanase, CALCIUM ION, SULFATE ION, ... | | Authors: | Itoh, T, Intuy, R, Suyotha, W, Hayashi, J, Yano, S, Makabe, K, Wakayama, M, Hibi, T. | | Deposit date: | 2019-05-07 | | Release date: | 2019-12-25 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.504 Å) | | Cite: | Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11.
Febs J., 287, 2020
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7C7D
 | | Crystal structure of the catalytic unit of thermostable GH87 alpha-1,3-glucanase from Streptomyces thermodiastaticus strain HF3-3 | | Descriptor: | CALCIUM ION, PENTAETHYLENE GLYCOL, alpha-1,3-glucanase | | Authors: | Itoh, T, Panti, N, Toyotake, Y, Hayashi, J, Suyotha, W, Yano, S, Wakayama, M, Hibi, T. | | Deposit date: | 2020-05-25 | | Release date: | 2020-11-11 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.16 Å) | | Cite: | Crystal structure of the catalytic unit of thermostable GH87 alpha-1,3-glucanase from Streptomyces thermodiastaticus strain HF3-3.
Biochem.Biophys.Res.Commun., 533, 2020
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7D9W
 | | Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON | | Descriptor: | 6-DIAZENYL-5-OXO-L-NORLEUCINE, GLYCINE, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 | | Authors: | Hibi, T, Sano, C, Putthapong, P, Hayashi, J, Itoh, T, Wakayama, M. | | Deposit date: | 2020-10-14 | | Release date: | 2021-06-23 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
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4XB2
 | | Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH | | Descriptor: | 319aa long hypothetical homoserine dehydrogenase, L-HOMOSERINE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | | Authors: | Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. | | Deposit date: | 2014-12-16 | | Release date: | 2015-07-15 | | Last modified: | 2023-11-15 | | Method: | X-RAY DIFFRACTION (2.43 Å) | | Cite: | Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.
Sci Rep, 5, 2015
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4XB1
 | | Hyperthermophilic archaeal homoserine dehydrogenase in complex with NADPH | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 319aa long hypothetical homoserine dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | | Authors: | Sakuraba, H, Inoue, S, Yoneda, K, Ohshima, T. | | Deposit date: | 2014-12-16 | | Release date: | 2015-07-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.
Sci Rep, 5, 2015
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8J1C
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8J1G
 | | Structure of amino acid dehydrogenase in complex with NADPH | | Descriptor: | 1,2-ETHANEDIOL, ARGININE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | | Authors: | Sakuraba, H, Ohshima, T. | | Deposit date: | 2023-04-12 | | Release date: | 2023-08-16 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | First crystal structure of an NADP + -dependent l-arginine dehydrogenase belonging to the mu-crystallin family.
Int.J.Biol.Macromol., 249, 2023
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6K5Z
 | | Structure of uridylyltransferase | | Descriptor: | FE (III) ION, Galactose-1-phosphate uridylyltransferase, PHOSPHATE ION, ... | | Authors: | Sakuraba, H, Ohshida, T, Yoneda, K, Ohshima, T. | | Deposit date: | 2019-05-31 | | Release date: | 2019-12-18 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.33 Å) | | Cite: | Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum.
Proteins, 88, 2020
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6K9Z
 | | STRUCTURE OF URIDYLYLTRANSFERASE MUTANT | | Descriptor: | ACETATE ION, FE (III) ION, Galactose-1-phosphate uridylyltransferase, ... | | Authors: | Sakuraba, H, Ohshida, T, Yoneda, K, Ohshima, T. | | Deposit date: | 2019-06-19 | | Release date: | 2019-12-18 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.78 Å) | | Cite: | Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum.
Proteins, 88, 2020
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7D9X
 | | Highly active mutant W525D of Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens | | Descriptor: | GAMMA-BUTYROLACTONE, GLYCEROL, GLYCINE, ... | | Authors: | Hibi, T, Sano, C, Itoh, T, Wakayama, M. | | Deposit date: | 2020-10-14 | | Release date: | 2021-06-23 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.74 Å) | | Cite: | Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
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7D9E
 | | Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens complexed with L-DON | | Descriptor: | 6-DIAZENYL-5-OXO-L-NORLEUCINE, GLYCEROL, Gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 | | Authors: | Hibi, T, Sano, C, Itoh, T, Wakayama, M. | | Deposit date: | 2020-10-13 | | Release date: | 2021-06-23 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens.
Biochem.Biophys.Res.Commun., 534, 2021
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