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1IYY
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NMR STRUCTURE OF GLN25-RIBONUCLEASE T1, 24 STRUCTURES
Descriptor:RIBONUCLEASE T1
Authors:Hatano, K., Kojima, M., Suzuki, E., Tanokura, M., Takahashi, K.
Deposit date:2002-09-12
Release date:2003-10-07
Last modified:2018-07-25
Method:SOLUTION NMR
Cite:Determination of the NMR structure of Gln25-ribonuclease T1.
Biol. Chem., 384, 2003
5X19
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CO BOUND CYTOCHROME C OXIDASE AT 100 MICRO SEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1B
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CO BOUND CYTOCHROME C OXIDASE AT 20 NSEC AFTER PUMP LASER IRRADIATION TO RELEASE CO FROM O2 REDUCTION CENTER
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
5X1F
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CO BOUND CYTOCHROME C OXIDASE WITHOUT PUMP LASER IRRADIATION AT 278K
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T.
Deposit date:2017-01-25
Release date:2017-08-09
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.
Sci Adv, 3, 2017
1X25
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CRYSTAL STRUCTURE OF A MEMBER OF YJGF FAMILY FROM SULFOLOBUS TOKODAII (ST0811)
Descriptor:Hypothetical UPF0076 protein ST0811
Authors:Miyakawa, T., Lee, W.C., Hatano, K., Kato, Y., Sawano, Y., Miyazono, K., Nagata, K., Tanokura, M.
Deposit date:2005-04-20
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7
Proteins, 62, 2006
2EJX
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CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN STK_08120 FROM SULFOLOBUS TOKODAII
Descriptor:STK_08120
Authors:Miyakawa, T., Miyazono, K., Sawano, Y., Hatano, K., Nagata, K., Tanokura, M.
Deposit date:2007-03-21
Release date:2008-03-25
Last modified:2013-11-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:A thermoacidophile-specific protein family, DUF3211, functions as a fatty acid carrier with novel binding mode
J.Bacteriol., 195, 2013
3A2E
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CRYSTAL STRUCTURE OF GINKBILOBIN-2, THE NOVEL ANTIFUNGAL PROTEIN FROM GINKGO BILOBA SEEDS
Descriptor:Ginkbilobin-2
Authors:Miyakawa, T., Miyazono, K., Sawano, Y., Hatano, K., Tanokura, M.
Deposit date:2009-05-13
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of ginkbilobin-2 with homology to the extracellular domain of plant cysteine-rich receptor-like kinases
Proteins, 77, 2009
3W9K
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CRYSTAL STRUCTURE OF THERMOACIDOPHILE-SPECIFIC PROTEIN STK_08120 COMPLEXED WITH MYRISTIC ACID
Descriptor:FATTY ACID-BINDING PROTEIN, MYRISTIC ACID
Authors:Miyakawa, T., Sawano, Y., Miyazono, K., Miyauchi, Y., Hatano, K., Tanokura, M.
Deposit date:2013-04-05
Release date:2013-07-17
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A Thermoacidophile-Specific Protein Family, DUF3211, Functions as a Fatty Acid Carrier with Novel Binding Mode
J.Bacteriol., 2013
5Z84
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THE STRUCTURE OF AZIDE-BOUND CYTOCHROME C OXIDASE DETERMINED USING THE CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 4 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5Z85
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THE STRUCTURE OF AZIDE-BOUND CYTOCHROME C OXIDASE DETERMINED USING THE ANOTHER BATCH CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5Z86
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 3 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-01-31
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5ZCO
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 2 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-02-19
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5ZCP
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 20 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-02-19
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
5ZCQ
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AZIDE-BOUND CYTOCHROME C OXIDASE STRUCTURE DETERMINED USING THE CRYSTALS EXPOSED TO 10 MM AZIDE SOLUTION FOR 2 DAYS
Descriptor:Cytochrome c oxidase subunit 1, Cytochrome c oxidase subunit 2, Cytochrome c oxidase subunit 3, ...
Authors:Shimada, A., Hatano, K., Tadehara, H., Tsukihara, T.
Deposit date:2018-02-19
Release date:2018-08-15
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray structural analyses of azide-bound cytochromecoxidases reveal that the H-pathway is critically important for the proton-pumping activity.
J. Biol. Chem., 293, 2018
4XRE
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CRYSTAL STRUCTURE OF GNK2 COMPLEXED WITH MANNOSE
Descriptor:Antifungal protein ginkbilobin-2, ALPHA-D-MANNOSE
Authors:Miyakawa, T., Hatano, K., Miyauchi, Y., Suwa, Y., Sawano, Y., Tanokura, M.
Deposit date:2015-01-21
Release date:2015-02-25
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:A secreted protein with plant-specific cysteine-rich motif functions as a mannose-binding lectin that exhibits antifungal activity.
Plant Physiol., 166, 2014
1BI6
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NMR STRUCTURE OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM
Descriptor:BROMELAIN INHIBITOR VI
Authors:Hatano, K.-I.
Deposit date:1995-12-07
Release date:1996-04-03
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.
Biochemistry, 35, 1996
2BI6
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NMR STUDY OF BROMELAIN INHIBITOR VI FROM PINEAPPLE STEM
Descriptor:BROMELAIN INHIBITOR VI
Authors:Hatano, K.-I.
Deposit date:1995-12-07
Release date:1996-04-03
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of bromelain inhibitor IV from pineapple stem: structural similarity with Bowman-Birk trypsin/chymotrypsin inhibitor from soybean.
Biochemistry, 35, 1996
4TWL
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CRYSTAL STRUCTURE OF DIOSCORIN COMPLEXED WITH ASCORBATE
Descriptor:Dioscorin 5, SULFATE ION, ASCORBIC ACID
Authors:Xue, Y.L., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2014-07-01
Release date:2015-04-01
Last modified:2015-08-05
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Yam Tuber Storage Protein Reduces Plant Oxidants Using the Coupled Reactions as Carbonic Anhydrase and Dehydroascorbate Reductase
Mol Plant, 8, 2015
4TWM
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CRYSTAL STRUCTURE OF DIOSCORIN FROM DIOSCOREA JAPONICA
Descriptor:Dioscorin 5, SULFATE ION
Authors:Xue, Y.L., Miyakawa, T., Nakamura, A., Tanokura, M.
Deposit date:2014-07-01
Release date:2015-04-01
Last modified:2015-08-05
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Yam Tuber Storage Protein Reduces Plant Oxidants Using the Coupled Reactions as Carbonic Anhydrase and Dehydroascorbate Reductase
Mol Plant, 8, 2015