Author results

3W1Z
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HEAT SHOCK PROTEIN 16.0 FROM SCHIZOSACCHAROMYCES POMBE
Descriptor:Heat shock protein 16
Authors:Hanazono, Y., Takeda, K., Akiyama, N., Aikawa, Y., Miki, K.
Deposit date:2012-11-26
Release date:2013-03-13
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Nonequivalence Observed for the 16-Meric Structure of a Small Heat Shock Protein, SpHsp16.0, from Schizosaccharomyces pombe
Structure, 21, 2013
3VQK
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SMALL HEAT SHOCK PROTEIN HSP14.0 OF WILD TYPE
Descriptor:Small heat shock protein StHsp14.0
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2012-03-26
Release date:2012-06-06
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structural studies on the oligomeric transition of a small heat shock protein, StHsp14.0
J.Mol.Biol., 422, 2012
3VQL
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SMALL HEAT SHOCK PROTEIN HSP14.0 OF C-TERMINAL DELETION VARIANT
Descriptor:Small heat shock protein StHsp14.0
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2012-03-26
Release date:2012-06-06
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural studies on the oligomeric transition of a small heat shock protein, StHsp14.0
J.Mol.Biol., 422, 2012
3VQM
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SMALL HEAT SHOCK PROTEIN HSP14.0 OF C-TERMINAL DELETION VARIANT WITH C-TERMINAL PEPTIDE
Descriptor:Small heat shock protein StHsp14.0, C-terminal peptide from Small heat shock protein StHsp14.0
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2012-03-26
Release date:2012-06-06
Last modified:2013-07-24
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural studies on the oligomeric transition of a small heat shock protein, StHsp14.0
J.Mol.Biol., 422, 2012
3WOA
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CRYSTAL STRUCTURE OF LAMBDA REPRESSOR (1-45) FUSED WITH MALTOSE-BINDING PROTEIN
Descriptor:Repressor protein CI, Maltose-binding periplasmic protein, MALTOSE
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2013-12-25
Release date:2015-04-29
Last modified:2018-08-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Co-translational folding of alpha-helical proteins: structural studies of intermediate-length variants of the lambda repressor.
FEBS Open Bio, 8, 2018
5B3P
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NQO5 OF THE TRYPSIN-RESISTANT FRAGMENT (1-134) IN P212121 FORM
Descriptor:NADH-quinone oxidoreductase subunit 5, CALCIUM ION
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2016-03-09
Release date:2016-07-27
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Characterization of the Nqo5 subunit of bacterial complex I in the isolated state
Febs Open Bio, 6, 2016
5B3Q
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NQO5 OF THE TRYPSIN-RESISTANT FRAGMENT (1-134) IN P63 FORM
Descriptor:NADH-quinone oxidoreductase subunit 5
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2016-03-09
Release date:2016-07-27
Method:X-RAY DIFFRACTION (3.003 Å)
Cite:Characterization of the Nqo5 subunit of bacterial complex I in the isolated state
Febs Open Bio, 6, 2016
5B3W
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CRYSTAL STRUCTURE OF HPIN1 WW DOMAIN (5-15) FUSED WITH MALTOSE-BINDING PROTEIN IN C2221 FORM
Descriptor:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein, MALTOSE, CITRIC ACID
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2016-03-17
Release date:2016-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein
Sci Rep, 6, 2016
5B3X
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CRYSTAL STRUCTURE OF HPIN1 WW DOMAIN (5-15) FUSED WITH MALTOSE-BINDING PROTEIN IN P41212 FORM
Descriptor:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein, MALTOSE
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2016-03-17
Release date:2016-10-26
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein
Sci Rep, 6, 2016
5B3Y
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CRYSTAL STRUCTURE OF HPIN1 WW DOMAIN (5-23) FUSED WITH MALTOSE-BINDING PROTEIN
Descriptor:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein, MALTOSE
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2016-03-17
Release date:2016-10-26
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein
Sci Rep, 6, 2016
5B3Z
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CRYSTAL STRUCTURE OF HPIN1 WW DOMAIN (5-39) FUSED WITH MALTOSE-BINDING PROTEIN
Descriptor:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein, MALTOSE
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2016-03-17
Release date:2016-10-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein
Sci Rep, 6, 2016
5BMY
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CRYSTAL STRUCTURE OF HPIN1 WW DOMAIN (5-21) FUSED WITH MALTOSE-BINDING PROTEIN
Descriptor:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein, MALTOSE
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2015-05-25
Release date:2016-10-26
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural studies of the N-terminal fragments of the WW domain: Insights into co-translational folding of a beta-sheet protein
Sci Rep, 6, 2016
5ZCA
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CRYSTAL STRUCTURE OF LAMBDA REPRESSOR (1-20) FUSED WITH MALTOSE-BINDING PROTEIN
Descriptor:Repressor protein cI,Maltose-binding periplasmic protein, MALTOSE, CITRIC ACID
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2018-02-16
Release date:2018-08-15
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Co-translational folding of alpha-helical proteins: structural studies of intermediate-length variants of the lambda repressor
Febs Open Bio, 8, 2018
6AIQ
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HIGH RESOLUTION STRUCTURE OF RECOMBINANT HIGH-POTENTIAL IRON-SULFUR PROTEIN
Descriptor:High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2018-08-24
Release date:2019-08-21
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography.
Proteins, 2019
6AIR
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HIGH RESOLUTION STRUCTURE OF PERDEUTERATED HIGH-POTENTIAL IRON-SULFUR PROTEIN
Descriptor:High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Hanazono, Y., Takeda, K., Miki, K.
Deposit date:2018-08-24
Release date:2019-08-21
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography.
Proteins, 2019
5ZUI
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CRYSTAL STRUCTURE OF HSP104 FROM CHAETOMIUM THERMOPHILUM
Descriptor:Heat Shock Protein 104, ADENOSINE-5'-DIPHOSPHATE, SULFATE ION
Authors:Hanazono, Y., Inoue, Y., Noguchi, K., Yohda, M., Shinohara, K., Takeda, K., Miki, K.
Deposit date:2018-05-07
Release date:2019-06-19
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Transient splitting of the Hsp104 hexameric ring revealed by near atomic analysis and direct visual observation
To Be Published
3AAB
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SMALL HEAT SHOCK PROTEIN HSP14.0 WITH THE MUTATIONS OF I120F AND I122F IN THE FORM I CRYSTAL
Descriptor:Putative uncharacterized protein ST1653, GLYCEROL, ISOPROPYL ALCOHOL
Authors:Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
3AAC
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SMALL HEAT SHOCK PROTEIN HSP14.0 WITH THE MUTATIONS OF I120F AND I122F IN THE FORM II CRYSTAL
Descriptor:Putative uncharacterized protein ST1653
Authors:Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.
Deposit date:2009-11-13
Release date:2010-11-17
Last modified:2011-12-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
5WQQ
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HIGH RESOLUTION STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN IN THE OXIDIZED STATE
Descriptor:High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Ohno, H., Takeda, K., Niwa, S., Tsujinaka, T., Hanazono, Y., Hirano, Y., Miki, K.
Deposit date:2016-11-28
Release date:2017-06-07
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution
PLoS ONE, 12, 2017
5WQR
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HIGH RESOLUTION STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN IN THE REDUCED STATE
Descriptor:High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION, ...
Authors:Ohno, H., Takeda, K., Niwa, S., Tsujinaka, T., Hanazono, Y., Hirano, Y., Miki, K.
Deposit date:2016-11-28
Release date:2017-06-07
Method:X-RAY DIFFRACTION (0.8 Å)
Cite:Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution
PLoS ONE, 12, 2017
6JGH
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CRYSTAL STRUCTURE OF THE F99S/M153T/V163A/T203I VARIANT OF GFP AT 0.94 A
Descriptor:Green fluorescent protein, CHLORIDE ION
Authors:Eki, H., Tai, Y., Takaba, K., Hanazono, Y., Miki, K., Takeda, K.
Deposit date:2019-02-14
Release date:2019-04-17
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (0.94 Å)
Cite:Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
6JGI
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CRYSTAL STRUCTURE OF THE S65T/F99S/M153T/V163A VARIANT OF GFP AT 0.85 A
Descriptor:Green fluorescent protein
Authors:Tai, Y., Takaba, K., Hanazono, Y., Miki, K., Takeda, K.
Deposit date:2019-02-14
Release date:2019-04-17
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
6JGJ
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CRYSTAL STRUCTURE OF THE F99S/M153T/V163A/E222Q VARIANT OF GFP AT 0.78 A
Descriptor:Green fluorescent protein, MAGNESIUM ION
Authors:Takaba, K., Tai, Y., Hanazono, Y., Miki, K., Takeda, K.
Deposit date:2019-02-14
Release date:2019-04-17
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (0.78 Å)
Cite:Subatomic resolution X-ray structures of green fluorescent protein.
Iucrj, 6, 2019
5DHD
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CRYSTAL STRUCTURE OF CHBD2 FROM THERMOCOCCUS KODAKARENSIS KOD1
Descriptor:Chitinase, SULFATE ION, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL
Authors:Hibi, M., Niwa, S., Takeda, K., Miki, K.
Deposit date:2015-08-30
Release date:2016-02-10
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1
Febs Lett., 590, 2016
5DHE
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CRYSTAL STRUCTURE OF CHBD3 FROM THERMOCOCCUS KODAKARENSIS KOD1
Descriptor:Chitinase, GLYCEROL
Authors:Niwa, S., Hibi, M., Takeda, K., Miki, K.
Deposit date:2015-08-30
Release date:2016-02-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1
Febs Lett., 590, 2016