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4V4N
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BU of 4v4n by Molmil
Structure of the Methanococcus jannaschii ribosome-SecYEBeta channel complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein L7AE, ...
Authors:Menetret, J.F, Park, E, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A, Akey, C.W.
Deposit date:2013-06-17
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
3J45
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BU of 3j45 by Molmil
Structure of a non-translocating SecY protein channel with the 70S ribosome
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L23, 50S ribosomal protein L24, ...
Authors:Menetret, J.F, Park, E, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A, Akey, C.W.
Deposit date:2013-06-18
Release date:2013-10-23
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
3J46
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BU of 3j46 by Molmil
Structure of the SecY protein translocation channel in action
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L1, 50S ribosomal protein L23P, ...
Authors:Akey, C.W, Park, E, Menetret, J.F, Gumbart, J.C, Ludtke, S.J, Li, W, Whynot, A, Rapoport, T.A.
Deposit date:2013-06-18
Release date:2013-10-23
Last modified:2019-07-03
Method:ELECTRON MICROSCOPY (10.1 Å)
Cite:Structure of the SecY channel during initiation of protein translocation.
Nature, 506, 2013
4LF0
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BU of 4lf0 by Molmil
The E142D mutant of the amidase from Geobacillus pallidus
Descriptor: Aliphatic amidase
Authors:Sewell, B.T, Weber, B.W, Kimani, S.W, Cowan, D.A, Hunter, R, Venter, G.A, Gumbart, J.C, Thuku, R.N, Varsani, A.
Deposit date:2013-06-26
Release date:2013-08-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
J.Biol.Chem., 288, 2013
4V7I
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BU of 4v7i by Molmil
Ribosome-SecY complex.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Gumbart, J.C, Trabuco, L.G, Schreiner, E, Villa, E, Schulten, K.
Deposit date:2009-10-21
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (9.6 Å)
Cite:Regulation of the protein-conducting channel by a bound ribosome.
Structure, 17, 2009
6OU2
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BU of 6ou2 by Molmil
Crystal Structure of the D478N Variant of the Myocilin Olfactomedin Domain
Descriptor: GLYCEROL, Myocilin, SODIUM ION
Authors:Hill, S.E, Kwon, M.S, Lieberman, R.L.
Deposit date:2019-05-03
Release date:2019-07-03
Last modified:2020-01-15
Method:X-RAY DIFFRACTION (1.963 Å)
Cite:Stable calcium-free myocilin olfactomedin domain variants reveal challenges in differentiating between benign and glaucoma-causing mutations.
J.Biol.Chem., 294, 2019
8T61
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BU of 8t61 by Molmil
Solution NMR structure of designed peptide BH33 (RHYYKFNSTGRHYHYY)
Descriptor: Designed peptide BH33
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-06-15
Release date:2023-06-28
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8T63
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BU of 8t63 by Molmil
Solution NMR structure of designed peptide PH1 (WHMWNTVPNAKQVIAA)
Descriptor: Designed peptide PH1
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-06-15
Release date:2023-06-28
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8T62
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BU of 8t62 by Molmil
Solution NMR structure of designed peptide BH21 (TMIEDPEAGHFHTSSA)
Descriptor: Designed peptide BH21
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-06-15
Release date:2023-06-28
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
8TXS
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BU of 8txs by Molmil
Solution NMR structure of designed peptide BH26 (RGVTVPHNGESKDYSV)
Descriptor: BH26 peptide
Authors:McShan, A.C, Torres, M.P.
Deposit date:2023-08-24
Release date:2023-09-06
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Generative beta-hairpin design using a residue-based physicochemical property landscape.
Biophys.J., 2024
4EWL
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BU of 4ewl by Molmil
Crystal Structure of MshB with glycerol and Acetate bound in the active site
Descriptor: 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, ACETATE ION, ...
Authors:Broadley, S.G, Sewell, B.T, Weber, B.W, Marakalala, M.J, Steenkamp, D.J.
Deposit date:2012-04-27
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A new crystal form of MshB from Mycobacterium tuberculosis with glycerol and acetate in the active site suggests the catalytic mechanism.
Acta Crystallogr.,Sect.D, 68, 2012
7N85
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BU of 7n85 by Molmil
Inner ring spoke from the isolated yeast NPC
Descriptor: Nucleoporin ASM4, Nucleoporin NIC96, Nucleoporin NSP1, ...
Authors:Akey, C.W, Rout, M.P, Ouch, C, Echevarria, I, Fernandez-Martinez, J, Nudelman, I.
Deposit date:2021-06-13
Release date:2022-01-26
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Comprehensive structure and functional adaptations of the yeast nuclear pore complex.
Cell, 185, 2022
7N84
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BU of 7n84 by Molmil
Double nuclear outer ring from the isolated yeast NPC
Descriptor: Nucleoporin 145c, Nucleoporin NUP120, Nucleoporin NUP133, ...
Authors:Akey, C.W, Rout, M.P, Ouch, C, Echevarria, I, Fernandez-Martinez, J, Nudelman, I.
Deposit date:2021-06-13
Release date:2022-01-26
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (11.6 Å)
Cite:Comprehensive structure and functional adaptations of the yeast nuclear pore complex.
Cell, 185, 2022
7N9F
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BU of 7n9f by Molmil
Structure of the in situ yeast NPC
Descriptor: Dynein light chain 1, cytoplasmic, Nucleoporin 145c, ...
Authors:Villa, E, Singh, D, Ludtke, S.J, Akey, C.W, Rout, M.P, Echeverria, I, Suslov, S.
Deposit date:2021-06-17
Release date:2022-01-26
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (37 Å)
Cite:Comprehensive structure and functional adaptations of the yeast nuclear pore complex.
Cell, 185, 2022
4EYY
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BU of 4eyy by Molmil
Crystal Structure of the IcmR-IcmQ complex from Legionella pneumophila
Descriptor: IcmQ, IcmR
Authors:Farelli, J.D, Gumbart, J, Akey, I.V, Amyot, W, Hempstead, A.D, Head, J.F, McKnight, C.J, Isberg, R.R, Akey, C.W.
Deposit date:2012-05-02
Release date:2013-05-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:IcmQ in the Type 4b secretion system contains an NAD+ binding domain.
Structure, 21, 2013
8DOT
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BU of 8dot by Molmil
Structure of a methane clathrate binding protein
Descriptor: TETRAETHYLENE GLYCOL, methane clathrate binding protein
Authors:Huard, D.J.E, Lieberman, R.L, Glass, J.B.
Deposit date:2022-07-14
Release date:2023-09-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Molecular basis for inhibition of methane clathrate growth by a deep subsurface bacterial protein.
Pnas Nexus, 2, 2023
4X0K
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BU of 4x0k by Molmil
Engineered Fab fragment specific for EYMPME (EE) peptide
Descriptor: Fab fragment heavy chain, Fab fragment light chain
Authors:Johnson, J.L, Lieberman, R.L.
Deposit date:2014-11-21
Release date:2015-04-08
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural and biophysical characterization of an epitope-specific engineered Fab fragment and complexation with membrane proteins: implications for co-crystallization.
Acta Crystallogr.,Sect.D, 71, 2015
8E1M
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BU of 8e1m by Molmil
Cryo-EM structure of the endogenous core TIM23 complex from S. cerevisiae
Descriptor: Antibody Fab fragment heavy chain, Antibody Fab fragment light chain, CARDIOLIPIN, ...
Authors:Sim, S.I, Park, E.
Deposit date:2022-08-10
Release date:2023-06-21
Last modified:2023-10-04
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis of mitochondrial protein import by the TIM23 complex.
Nature, 621, 2023
4YS0
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BU of 4ys0 by Molmil
Conformational changes of the clamp of the protein translocation ATPase SecA from Thermotoga maritima
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translocase subunit SecA
Authors:Chen, Y, Rapoport, T.A.
Deposit date:2015-03-16
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Conformational Changes of the Clamp of the Protein Translocation ATPase SecA.
J.Mol.Biol., 427, 2015
8FRR
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BU of 8frr by Molmil
Wild-type myocilin olfactomedin domain
Descriptor: CALCIUM ION, GLYCEROL, Myocilin, ...
Authors:Ma, M.T, Lieberman, R.L, Huard, D.J.E.
Deposit date:2023-01-08
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Competition between inside-out unfolding and pathogenic aggregation in an amyloid-forming beta-propeller.
Nat Commun, 15, 2024
6WIM
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BU of 6wim by Molmil
CdiB from Escherichia coli
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Outer membrane transporter CdiB
Authors:Guerin, J, Botos, I, Buchanan, S.K.
Deposit date:2020-04-10
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insight into toxin secretion by contact dependent growth inhibition transporters.
Elife, 9, 2020
6WIL
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BU of 6wil by Molmil
CdiB from Acinetobacter baumannii
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, DI(HYDROXYETHYL)ETHER, Hemolysin activator protein CdiB, ...
Authors:Guerin, J, Botos, I, Buchanan, S.K.
Deposit date:2020-04-10
Release date:2020-11-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insight into toxin secretion by contact dependent growth inhibition transporters.
Elife, 9, 2020
6OU3
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BU of 6ou3 by Molmil
Crystal Structure of the D478S Variant of the Myocilin Olfactomedin Domain
Descriptor: GLYCEROL, Myocilin, SODIUM ION
Authors:Hill, S.E, Kwon, M.S, Lieberman, R.L.
Deposit date:2019-05-03
Release date:2019-07-03
Last modified:2020-01-15
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Stable calcium-free myocilin olfactomedin domain variants reveal challenges in differentiating between benign and glaucoma-causing mutations.
J.Biol.Chem., 294, 2019
6OU0
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BU of 6ou0 by Molmil
Crystal Structure of the D380A/D478S Variant of the Myocilin Olfactomedin Domain
Descriptor: GLYCEROL, Myocilin
Authors:Hill, S.E, Kwon, M.S, Lieberman, R.L.
Deposit date:2019-05-03
Release date:2019-07-03
Last modified:2020-01-15
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Stable calcium-free myocilin olfactomedin domain variants reveal challenges in differentiating between benign and glaucoma-causing mutations.
J.Biol.Chem., 294, 2019
6OU1
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BU of 6ou1 by Molmil
Crystal Structure of the Computationally-derived 21-Variant of the Myocilin Olfactomedin Domain
Descriptor: CALCIUM ION, GLYCEROL, Myocilin, ...
Authors:Hill, S.E, Kwon, M.S, Lieberman, R.L.
Deposit date:2019-05-03
Release date:2019-07-03
Last modified:2020-01-15
Method:X-RAY DIFFRACTION (1.878 Å)
Cite:Stable calcium-free myocilin olfactomedin domain variants reveal challenges in differentiating between benign and glaucoma-causing mutations.
J.Biol.Chem., 294, 2019

 

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