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1ML6
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BU of 1ml6 by Molmil
Crystal Structure of mGSTA2-2 in Complex with the Glutathione Conjugate of Benzo[a]pyrene-7(R),8(S)-Diol-9(S),10(R)-Epoxide
Descriptor: 2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7,8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID, Glutathione S-Transferase GT41A, ISOPROPYL ALCOHOL
Authors:Gu, Y, Xiao, B, Wargo, H.L, Bucher, M.H, Singh, S.V, Ji, X.
Deposit date:2002-08-30
Release date:2003-04-15
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Residues 207, 216, and 221 and the catalytic activity of mGSTA1-1 and mGSTA2-2 toward benzo[a]pyrene-(7R,8S)-diol-(9S,10R)-epoxide
Biochemistry, 42, 2003
1L4U
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BU of 1l4u by Molmil
CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
Authors:Gu, Y, Reshetnikova, L, Li, Y, Wu, Y, Yan, H, Singh, S, Ji, X.
Deposit date:2002-03-05
Release date:2002-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis.
J.Mol.Biol., 319, 2002
1L4Y
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BU of 1l4y by Molmil
CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Gu, Y, Reshetnikova, L, Li, Y, Wu, Y, Yan, H, Singh, S, Ji, X.
Deposit date:2002-03-06
Release date:2002-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis.
J.Mol.Biol., 319, 2002
1F3B
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BU of 1f3b by Molmil
CRYSTAL STRUCTURE OF MGSTA1-1 IN COMPLEX WITH GLUTATHIONE CONJUGATE OF BENZO[A]PYRENE EPOXIDE
Descriptor: 2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7,8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID, GLUTATHIONE S-TRANSFERASE YA CHAIN
Authors:Gu, Y, Singh, S.V, Ji, X.
Deposit date:2000-06-01
Release date:2000-10-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Residue R216 and catalytic efficiency of a murine class alpha glutathione S-transferase toward benzo[a]pyrene 7(R),8(S)-diol 9(S), 10(R)-epoxide.
Biochemistry, 39, 2000
1F3A
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BU of 1f3a by Molmil
CRYSTAL STRUCTURE OF MGSTA1-1 IN COMPLEX WITH GSH
Descriptor: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE YA CHAIN
Authors:Gu, Y, Singh, S.V, Ji, X.
Deposit date:2000-06-01
Release date:2000-10-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Residue R216 and catalytic efficiency of a murine class alpha glutathione S-transferase toward benzo[a]pyrene 7(R),8(S)-diol 9(S), 10(R)-epoxide.
Biochemistry, 39, 2000
6VK9
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BU of 6vk9 by Molmil
Cryo-EM structure of PilA-N/C from Geobacter sulfurreducens
Descriptor: Geopilin domain 1 protein, Geopilin domain 2 protein
Authors:Gu, Y, Srikanth, V, Malvankar, N.S, Samatey, F.A.
Deposit date:2020-01-19
Release date:2021-07-07
Last modified:2021-09-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of Geobacter pili reveals secretory rather than nanowire behaviour
Nature, 597, 2021
7LQ5
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BU of 7lq5 by Molmil
Cryo-EM structure of OmcZ nanowire from Geobacter sulfurreducens
Descriptor: Cytochrome c, HEME C
Authors:Gu, Y, Srikanth, V, Malvankar, N.S, Samatey, F.A.
Deposit date:2021-02-13
Release date:2022-08-24
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity.
Nat Microbiol, 8, 2023
1TDI
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BU of 1tdi by Molmil
Crystal Structure of hGSTA3-3 in Complex with Glutathione
Descriptor: GLUTATHIONE, Glutathione S-transferase A3-3
Authors:Gu, Y, Guo, J, Pal, A, Pan, S.S, Zimniak, P, Singh, S.V, Ji, X.
Deposit date:2004-05-22
Release date:2005-01-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human glutathione S-transferase A3-3 and mechanistic implications for its high steroid isomerase activity.
Biochemistry, 43, 2004
5D0Q
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BU of 5d0q by Molmil
BamACDE complex, outer membrane beta-barrel assembly machinery (BAM) complex
Descriptor: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamC, Outer membrane protein assembly factor BamD, ...
Authors:Gu, Y, Paterson, N, Zeng, Y, Dong, H, Wang, W, Dong, C.
Deposit date:2015-08-03
Release date:2016-03-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis of outer membrane protein insertion by the BAM complex.
Nature, 531, 2016
5D0O
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BU of 5d0o by Molmil
BamABCDE complex, outer membrane beta barrel assembly machinery entire complex
Descriptor: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, Outer membrane protein assembly factor BamC, ...
Authors:Gu, Y, Paterson, N, Zeng, Y, Dong, H, Wang, W, Dong, C.
Deposit date:2015-08-03
Release date:2016-03-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of outer membrane protein insertion by the BAM complex.
Nature, 531, 2016
3VRL
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BU of 3vrl by Molmil
Crystal structure of BMJ4 p24 capsid protein in complex with A10F9 Fab
Descriptor: A10F9 Fab heavy chain, A10F9 Fab light chain, Gag protein
Authors:Gu, Y, Cao, F, Li, S, Yuan, Y.A, Xia, N.
Deposit date:2012-04-12
Release date:2013-04-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of the HIV-1 capsid protein p24 in complex with the broad-spectrum antibody A10F9
To be Published
7DWM
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BU of 7dwm by Molmil
Crystal structure of the phage VqmA-DPO complex
Descriptor: 3,5-dimethylpyrazin-2-ol, Transcriptional regulator
Authors:Gu, Y, Yang, W.S.
Deposit date:2021-01-17
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Understanding the mechanism of asymmetric gene regulation determined by the VqmA of vibriophage.
Biochem.Biophys.Res.Commun., 558, 2021
5OR1
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BU of 5or1 by Molmil
BamA structure of Salmonella enterica
Descriptor: Outer membrane protein assembly factor BamA
Authors:Dong, C, Gu, Y.
Deposit date:2017-08-14
Release date:2018-02-14
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:BamA beta 16C strand and periplasmic turns are critical for outer membrane protein insertion and assembly.
Biochem. J., 474, 2017
7TQD
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BU of 7tqd by Molmil
Structure of Enterobacter cloacae Cap2-CdnD02 2:1 complex
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Gu, Y, Ye, Q, Ledvina, H.E, Quan, Y, Lau, R.K, Zhou, H, Whiteley, A.T, Corbett, K.D.
Deposit date:2022-01-26
Release date:2023-01-11
Last modified:2023-04-26
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:An E1-E2 fusion protein primes antiviral immune signalling in bacteria.
Nature, 616, 2023
7TO3
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BU of 7to3 by Molmil
Structure of Enterobacter cloacae Cap2-CdnD02 2:2 complex
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Gu, Y, Ye, Q, Ledvina, H.E, Quan, Y, Lau, R.K, Zhou, H, Whiteley, A.T, Corbett, K.D.
Deposit date:2022-01-22
Release date:2023-01-11
Last modified:2023-04-26
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:An E1-E2 fusion protein primes antiviral immune signalling in bacteria.
Nature, 616, 2023
8CWW
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BU of 8cww by Molmil
Structure of S. cerevisiae Hop1 CBR bound to a nucleosome
Descriptor: Histone H2A, Histone H2B, Histone H3, ...
Authors:Gu, Y, Ur, S.N, Milano, C.R, Tromer, E.C, Vale-Silva, L.A, Hochwagen, A, Corbett, K.D.
Deposit date:2022-05-19
Release date:2023-06-07
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Meiotic HORMAD proteins directly chromatin to regulate chromosome axis assembly and interhomolog crossover formation
To be published
8CZE
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BU of 8cze by Molmil
Structure of a Xenopus Nucleosome with Widom 601 DNA
Descriptor: Histone H2A, Histone H2B, Histone H3, ...
Authors:Gu, Y, Ur, S.N, Milano, C.R, Tromer, E.C, Vale-Silva, L.A, Hochwagen, A, Corbett, K.D.
Deposit date:2022-05-24
Release date:2023-06-07
Method:ELECTRON MICROSCOPY (2.58 Å)
Cite:Meiotic HORMAD proteins directly chromatin to regulate chromosome axis assembly and interhomolog crossover formation
To be published
6ID4
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BU of 6id4 by Molmil
Defining the structural basis for human alloantibody binding to human leukocyte antigen allele HLA-A*11:01
Descriptor: Beta-2-microglobulin, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Lescar, J, Wong, Y.H, Liew, C.W, Gu, Y, MacAry, P.A.
Deposit date:2018-09-08
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Defining the structural basis for human alloantibody binding to human leukocyte antigen allele HLA-A*11:01.
Nat Commun, 10, 2019
6EF8
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BU of 6ef8 by Molmil
Cryo-EM of the OmcS nanowires from Geobacter sulfurreducens
Descriptor: C-type cytochrome OmcS, HEME C
Authors:Wang, F, Gu, Y, Egelman, E.H, Malvankar, N.S.
Deposit date:2018-08-16
Release date:2019-04-10
Last modified:2019-11-27
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers.
Cell, 177, 2019
1RHH
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BU of 1rhh by Molmil
Crystal Structure of the Broadly HIV-1 Neutralizing Fab X5 at 1.90 Angstrom Resolution
Descriptor: Fab X5, heavy chain, light chain
Authors:Darbha, R, Phogat, S, Labrijn, A.F, Shu, Y, Gu, Y, Andrykovitch, M, Zhang, M.Y, Pantophlet, R, Martin, L, Vita, C, Burton, D.R, Dimitrov, D.S, Ji, X.
Deposit date:2003-11-14
Release date:2004-02-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the Broadly Cross-Reactive HIV-1-Neutralizing Fab X5 and Fine Mapping of Its Epitope
Biochemistry, 43, 2004
8DK3
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BU of 8dk3 by Molmil
CryoEM structure of Pseudomonas aeruginosa PA14 JetC ATPase domain bound to DNA and cWHD domain of JetA
Descriptor: DNA (26-MER), JetA, JetC, ...
Authors:Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K.
Deposit date:2022-07-01
Release date:2022-10-05
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA.
Mol.Cell, 82, 2022
8DK2
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BU of 8dk2 by Molmil
CryoEM structure of Pseudomonas aeruginosa PA14 JetABC in an unclamped state trapped in ATP dependent dimeric form
Descriptor: DNA (26-MER), JetA, JetB, ...
Authors:Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K.
Deposit date:2022-07-01
Release date:2022-10-05
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA.
Mol.Cell, 82, 2022
8DK1
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BU of 8dk1 by Molmil
CryoEM structure of JetABC (head construct) from Pseudomonas aeruginosa PA14
Descriptor: JetA, JetB, JetC
Authors:Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K.
Deposit date:2022-07-01
Release date:2022-10-05
Last modified:2022-11-16
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA.
Mol.Cell, 82, 2022
1MRY
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BU of 1mry by Molmil
crystal structure of an inactive akt2 kinase domain
Descriptor: RAC-beta serine/threonine kinase
Authors:Huang, X, Begley, M, Morgenstern, K.A, Gu, Y, Rose, P, Zhao, H, Zhu, X.
Deposit date:2002-09-18
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of an inactive akt2 kinase domain
Structure, 11, 2003
1YY7
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BU of 1yy7 by Molmil
Crystal structure of stringent starvation protein A (SspA), an RNA polymerase-associated transcription factor
Descriptor: CITRIC ACID, stringent starvation protein A
Authors:Hansen, A.-M, Gu, Y, Li, M, Andrykovitch, M, Waugh, D.S, Jin, D.J, Ji, X.
Deposit date:2005-02-23
Release date:2005-03-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural basis for the function of stringent starvation protein A as a transcription factor
J.Biol.Chem., 280, 2005

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PDB entries from 2024-03-27

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