Author results

1C04
  • Download 1c04
  • View 1c04
Molmil generated image of 1c04
IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Descriptor:23S RRNA FRAGMENT, RIBOSOMAL PROTEIN L2, RIBOSOMAL PROTEIN L6, ...
Authors:Ban, N., Nissen, P., Capel, M., Moore, P.B., Steitz, T.A.
Deposit date:1999-07-14
Release date:1999-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (5 Å)
Cite:Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit.
Nature, 400, 1999
1EG0
  • Download 1eg0
  • View 1eg0
Molmil generated image of 1eg0
FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
Descriptor:FRAGMENT OF 16S RRNA HELIX 23, FRAGMENT OF 23S RRNA, HELIX 95 OF 23S RRNA, ...
Authors:Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.
Deposit date:2000-02-11
Release date:2000-03-06
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Solution structure of the E. coli 70S ribosome at 11.5 A resolution.
Cell(Cambridge,Mass.), 100, 2000
1FCW
  • Download 1fcw
  • View 1fcw
Molmil generated image of 1fcw
TRNA POSITIONS DURING THE ELONGATION CYCLE
Descriptor:TRNAPHE
Authors:Agrawal, R.K., Spahn, C.M.T., Penczek, P., Grassucci, R.A., Nierhaus, K.H., Frank, J.
Deposit date:2000-07-19
Release date:2000-08-11
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle.
J.Cell Biol., 150, 2000
1JQM
  • Download 1jqm
  • View 1jqm
Molmil generated image of 1jqm
FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G, GDP AND FUSIDIC ACID
Descriptor:50S Ribosomal protein L11, Elongation Factor G
Authors:Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQS
  • Download 1jqs
  • View 1jqs
Molmil generated image of 1jqs
FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG
Descriptor:50S Ribosomal protein L11, Elongation Factor G
Authors:Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1JQT
  • Download 1jqt
  • View 1jqt
Molmil generated image of 1jqt
FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
Descriptor:50S Ribosomal protein L11
Authors:Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J.
Deposit date:2001-08-07
Release date:2001-09-07
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (18 Å)
Cite:Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
1LS2
  • Download 1ls2
  • View 1ls2
Molmil generated image of 1ls2
FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
Descriptor:Phenylalanine transfer RNA, Elongation Factor Tu
Authors:Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
Deposit date:2002-05-16
Release date:2002-06-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1LU3
  • Download 1lu3
  • View 1lu3
Molmil generated image of 1lu3
SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME
Descriptor:PHENYLALANINE TRANSFER RNA
Authors:Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J.
Deposit date:2002-05-21
Release date:2002-06-26
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (16.799999 Å)
Cite:Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
1MI6
  • Download 1mi6
  • View 1mi6
Molmil generated image of 1mi6
DOCKING OF THE MODIFIED RF2 X-RAY STRUCTURE INTO THE LOW RESOLUTION CRYO-EM MAP OF RF2 E.COLI 70S RIBOSOME
Descriptor:peptide chain release factor RF-2
Authors:Rawat, U.B.S., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J.
Deposit date:2002-08-22
Release date:2003-01-14
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (10.9 Å)
Cite:A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
1MVR
  • Download 1mvr
  • View 1mvr
Molmil generated image of 1mvr
DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME
Descriptor:mRNA, triplet codon (A-site), Helix 34 of 16S rRNA, ...
Authors:Rawat, U.B., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J.
Deposit date:2002-09-26
Release date:2003-04-01
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12.8 Å)
Cite:A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
1RY1
  • Download 1ry1
  • View 1ry1
Molmil generated image of 1ry1
STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME
Descriptor:SRP Alu domain, SRP S domain, SRP RNA, ...
Authors:Halic, M., Becker, T., Pool, M.R., Spahn, C.M., Grassucci, R.A., Frank, J., Beckmann, R.
Deposit date:2003-12-19
Release date:2004-04-20
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structure of the signal recognition particle interacting with the elongation-arrested ribosome
Nature, 427, 2004
4V4B
  • Download 4v4b
  • View 4v4b
Molmil generated image of 4v4b
STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP.
Descriptor:18S ribosomal RNA, Elongation factor 2, 40S ribosomal protein S0-A, ...
Authors:Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
Deposit date:2004-01-06
Release date:2014-07-09
Last modified:2015-03-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
1T1M
  • Download 1t1m
  • View 1t1m
Molmil generated image of 1t1m
BINDING POSITION OF RIBOSOME RECYCLING FACTOR (RRF) ON THE E. COLI 70S RIBOSOME
Descriptor:dodecamer fragment of double helix from 23S rRNA, 42-mer fragment of double helix from 16S rRNA, ribosome recycling factor
Authors:Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.
Deposit date:2004-04-16
Release date:2004-06-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1O
  • Download 1t1o
  • View 1t1o
Molmil generated image of 1t1o
COMPONENTS OF THE CONTROL 70S RIBOSOME TO PROVIDE REFERENCE FOR THE RRF BINDING SITE
Descriptor:dodecamer fragment of double helix from 23S rRNA, 19-mer fragment of the 23S rRNA, 42-mer fragment of double helix from 16S rRNA
Authors:Agrawal, R.K., Sharma, M.R., Kiel, M.C., Hirokawa, G., Booth, T.M., Spahn, C.M., Grassucci, R.A., Kaji, A., Frank, J.
Deposit date:2004-04-16
Release date:2004-06-15
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
1ZC8
  • Download 1zc8
  • View 1zc8
Molmil generated image of 1zc8
COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO-EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX
Descriptor:TLD 16S ribosomal RNA, H2 16S rRNA, H2b d mRNA, ...
Authors:Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J.
Deposit date:2005-04-11
Release date:2005-04-19
Last modified:2013-12-11
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Visualizing tmRNA Entry into a Stalled Ribosome
Science, 300, 2003
4V69
  • Download 4v69
  • View 4v69
Molmil generated image of 4v69
TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME.
Descriptor:30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J.
Deposit date:2008-12-11
Release date:2014-07-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
4V8M
  • Download 4v8m
  • View 4v8m
Molmil generated image of 4v8m
HIGH-RESOLUTION CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE TRYPANOSOMA BRUCEI RIBOSOME
Descriptor:40S RIBOSOMAL PROTEIN S3A, PUTATIVE, 40S RIBOSOMAL PROTEIN S4, ...
Authors:Hashem, Y., des Georges, A., Fu, J., Buss, S.N., Jossinet, F., Jobe, A., Zhang, Q., Liao, H.Y., Grassucci, R.A., Bajaj, C., Westhof, E., Madison-Antenucci, S., Frank, J.
Deposit date:2012-12-09
Release date:2014-07-09
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (5.57 Å)
Cite:High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.
Nature, 494, 2013
4C4Q
  • Download 4c4q
  • View 4c4q
Molmil generated image of 4c4q
CRYO-EM MAP OF THE CSFV IRES IN COMPLEX WITH THE SMALL RIBOSOMAL 40S SUBUNIT AND DHX29
Descriptor:INTERNAL RIBOSOMAL ENTRY SITE
Authors:Hashem, Y., desGeorges, A., Dhote, V., Langlois, R., Liao, H.Y., Grassucci, R.A., Pestova, T.V., Hellen, C.U.T., Frank, J.
Deposit date:2013-09-07
Release date:2013-10-30
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (8.5 Å)
Cite:Hepatitis-C-Virus-Like Internal Ribosome Entry Sites Displace Eif3 to Gain Access to the 40S Subunit
Nature, 503, 2013
3J5Y
  • Download 3j5y
  • View 3j5y
Molmil generated image of 3j5y
STRUCTURE OF THE MAMMALIAN RIBOSOMAL PRE-TERMINATION COMPLEX ASSOCIATED WITH ERF1-ERF3-GDPNP
Descriptor:Eukaryotic peptide chain release factor subunit 1, Eukaryotic peptide chain release factor GTP-binding subunit ERF3A, 5'-R(*AP*UP*UP*GP*UP*AP*AP*AP*AP*A)-3', ...
Authors:des Georges, A., Hashem, Y., Unbehaun, A., Grassucci, R.A., Taylor, D., Hellen, C.U.T., Pestova, T.V., Frank, J.
Deposit date:2013-11-21
Release date:2013-12-25
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.7 Å)
Cite:Structure of the mammalian ribosomal pre-termination complex associated with eRF1*eRF3*GDPNP.
Nucleic Acids Res., 42, 2014
3J8B
  • Download 3j8b
  • View 3j8b
Molmil generated image of 3j8b
MODEL OF THE HUMAN EIF3 PCI-MPN OCTAMER DOCKED INTO THE 43S-HCV IRES EM MAP
Descriptor:Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ...
Authors:Erzberger, J.P., Ban, N.
Deposit date:2014-10-08
Release date:2014-10-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (9.3 Å)
Cite:Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.
Cell(Cambridge,Mass.), 158, 2014
3J8C
  • Download 3j8c
  • View 3j8c
Molmil generated image of 3j8c
MODEL OF THE HUMAN EIF3 PCI-MPN OCTAMER DOCKED INTO THE 43S EM MAP
Descriptor:Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ...
Authors:Erzberger, J.P., Ban, N.
Deposit date:2014-10-08
Release date:2014-10-22
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (11.6 Å)
Cite:Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.
Cell(Cambridge,Mass.), 158, 2014
5KBS
  • Download 5kbs
  • View 5kbs
Molmil generated image of 5kbs
CRYO-EM STRUCTURE OF GLUA2-0XSTZ AT 8.7 ANGSTROM RESOLUTION
Descriptor:Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid, N-ACETYL-D-GLUCOSAMINE
Authors:Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.
Deposit date:2016-06-03
Release date:2016-07-13
Last modified:2017-09-27
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:Elucidation of AMPA receptor-stargazin complexes by cryo-electron microscopy.
Science, 353, 2016
5KBT
  • Download 5kbt
  • View 5kbt
Molmil generated image of 5kbt
CRYO-EM STRUCTURE OF GLUA2-1XSTZ COMPLEX AT 6.4 ANGSTROM RESOLUTION
Descriptor:Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid, N-ACETYL-D-GLUCOSAMINE
Authors:Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.
Deposit date:2016-06-03
Release date:2016-07-13
Last modified:2017-09-27
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:Elucidation of AMPA receptor-stargazin complexes by cryo-electron microscopy.
Science, 353, 2016
5KBU
  • Download 5kbu
  • View 5kbu
Molmil generated image of 5kbu
CRYO-EM STRUCTURE OF GLUA2-2XSTZ COMPLEX AT 7.8 ANGSTROM RESOLUTION
Descriptor:Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid, N-ACETYL-D-GLUCOSAMINE
Authors:Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.A., Frank, J., Sobolevsky, A.I.
Deposit date:2016-06-03
Release date:2016-07-13
Last modified:2017-09-27
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Elucidation of AMPA receptor-stargazin complexes by cryo-electron microscopy.
Science, 353, 2016
5KBV
  • Download 5kbv
  • View 5kbv
Molmil generated image of 5kbv
CRYO-EM STRUCTURE OF GLUA2 BOUND TO ANTAGONIST ZK200775 AT 6.8 ANGSTROM RESOLUTION
Descriptor:Glutamate receptor 2, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid, N-ACETYL-D-GLUCOSAMINE
Authors:Twomey, E.C., Yelshanskaya, M.V., Grassucci, R.G., Frank, J., Sobolevsky, A.I.
Deposit date:2016-06-03
Release date:2016-07-13
Last modified:2017-09-27
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Elucidation of AMPA receptor-stargazin complexes by cryo-electron microscopy.
Science, 353, 2016
<123>
PDBj@FacebookPDBj@TwitterwwPDBwwPDB Foundation

Copyright © 2013-2019 Protein Data Bank Japan