Author results

4L78
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XENON TRAPPING AND STATISTICAL COUPLING ANALYSIS UNCOVER REGIONS IMPORTANT FOR STRUCTURE AND FUNCTION OF MULTIDOMAIN PROTEIN STPURL
Descriptor:Phosphoribosylformylglycinamidine synthase, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tanwar, A.S., Goyal, V.D., Choudhary, D., Panjikar, S., Anand, R.
Deposit date:2013-06-13
Release date:2013-12-11
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Importance of hydrophobic cavities in allosteric regulation of formylglycinamide synthetase: insight from xenon trapping and statistical coupling analysis
Plos One, 8, 2013
4LGY
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IMPORTANCE OF HYDROPHOBIC CAVITIES IN ALLOSTERIC REGULATION OF FORMYLGLYCINAMIDE SYNTHETASE: INSIGHT FROM XENON TRAPPING AND STATISTICAL COUPLING ANALYSIS
Descriptor:Phosphoribosylformylglycinamidine synthase, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tanwar, A.S., Goyal, V.D., Choudhary, D., Panjikar, S., Anand, R.
Deposit date:2013-06-30
Release date:2013-12-11
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Importance of hydrophobic cavities in allosteric regulation of formylglycinamide synthetase: insight from xenon trapping and statistical coupling analysis
Plos One, 8, 2013
4MGH
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IMPORTANCE OF HYDROPHOBIC CAVITIES IN ALLOSTERIC REGULATION OF FORMYLGLYCINAMIDE SYNTHETASE: INSIGHT FROM XENON TRAPPING AND STATISTICAL COUPLING ANALYSIS
Descriptor:Phosphoribosylformylglycinamidine synthase, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Tanwar, A.S., Goyal, V.D., Choudhary, D., Panjikar, S., Anand, R.
Deposit date:2013-08-28
Release date:2013-12-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Importance of hydrophobic cavities in allosteric regulation of formylglycinamide synthetase: insight from xenon trapping and statistical coupling analysis
Plos One, 8, 2013
6A4R
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CRYSTAL STRUCTURE OF ASPARTATE BOUND PEPTIDASE E FROM SALMONELLA ENTERICA
Descriptor:Peptidase E, ASPARTIC ACID
Authors:Yadav, P., Chandravanshi, K., Goyal, V.D., Singh, R., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2018-10-24
Method:X-RAY DIFFRACTION (1.828 Å)
Cite:Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
6A4S
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CRYSTAL STRUCTURE OF PEPTIDASE E WITH ORDERED ACTIVE SITE LOOP FROM SALMONELLA ENTERICA
Descriptor:Peptidase E
Authors:Yadav, P., Chandravanshi, K., Goyal, V.D., Singh, R., Kumar, A., Gokhale, S.M., Makde, R.D.
Deposit date:2018-06-20
Release date:2018-10-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Asp-bound peptidase E from Salmonella enterica: Active site at dimer interface illuminates Asp recognition.
FEBS Lett., 592, 2018
6A9T
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CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL 58 RESIDUES DELETION)
Descriptor:Intermediate cleaving peptidase 55, MANGANESE (II) ION, GLYCINE, ...
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: Role of dynamics in enzymatic function.
FEBS Lett., 2018
6A9U
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CRYSTAL STRCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE BOUND TO APSTATIN INHIBITOR
Descriptor:Intermediate cleaving peptidase 55, apstatin, MANGANESE (II) ION
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: Role of dynamics in enzymatic function.
FEBS Lett., 2018
6A9V
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CRYSTAL STRUCTURE OF ICP55 FROM SACCHAROMYCES CEREVISIAE (N-TERMINAL 42 RESIDUES DELETION)
Descriptor:Intermediate cleaving peptidase 55, MANGANESE (II) ION, TRIETHYLENE GLYCOL, ...
Authors:Singh, R., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-07-16
Release date:2019-01-16
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures and biochemical analyses of intermediate cleavage peptidase: Role of dynamics in enzymatic function.
FEBS Lett., 2018
6IGP
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (INACTIVE STATE)FROM DEINOCOCCUS RADIODURANS R1 IN P212121
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 in Tris-Cl condition (condition-2)
J.Biol.Chem., 2018
6IGQ
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CRYSTAL STRUCTURE OF INACTIVE STATE OF S9 PEPTIDASE FROM DEINOCOCCUS RADIODURANS R1 (PMSF TREATED)
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL, ...
Authors:Yadav, P., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of inactive state of S9 peptidase from Deinococcus radiodurans R1 in ammonium sulphate condition (condition 3)
J.Biol.Chem., 2018
6IGR
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CRYSTAL STRUCTURE OF S9 PEPTIDASE (S514A MUTANT IN INACTIVE STATE) FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Acyl-peptide hydrolase, putative, GLYCEROL
Authors:Yadav, P., Gaur, N.K., Goyal, V.D., Kumar, A., Makde, R.D.
Deposit date:2018-09-25
Release date:2018-11-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of S9 peptidase (S514A mutant in inactive state) from Deinococcus radiodurans R1
to be published
6IKG
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CRYSTAL STRUCTURE OF SUBSTRATE-BOUND S9 PEPTIDASE (S514A MUTANT) FROM DEINOCOCCUS RADIODURANS
Descriptor:Acyl-peptide hydrolase, putative, MET-ALA-ALA, ...
Authors:Yadav, P., Kumar, A., Goyal, V.D., Makde, R.D.
Deposit date:2018-10-16
Release date:2018-11-14
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Carboxypeptidase in prolyl oligopeptidase family: Unique enzyme activation and substrate-screening mechanisms
J. Biol. Chem., 294, 2019
5CNX
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CRYSTAL STRUCTURE OF XAA-PRO AMINOPEPTIDASE FROM ESCHERICHIA COLI K12
Descriptor:Aminopeptidase YpdF, ZINC ION, CACODYLATE ION, ...
Authors:Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2015-07-18
Release date:2016-07-20
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases
Proteins, 2018
5FCF
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CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS, PHOSPHATE AND MN BOUND
Descriptor:Proline dipeptidase, GLY-GLY-GLY, MANGANESE (II) ION, ...
Authors:Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2015-12-15
Release date:2016-12-07
Last modified:2017-01-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases.
Biochim. Biophys. Acta, 1865, 2017
5FCH
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CRYSTAL STRUCTURE OF XAA-PRO DIPEPTIDASE FROM XANTHOMONAS CAMPESTRIS, PHOSPHATE AND ZN BOUND
Descriptor:Proline dipeptidase, GLY-GLY-GLY, ZINC ION, ...
Authors:Kumar, A., Are, V., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2015-12-15
Release date:2016-12-07
Last modified:2017-01-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases
Biochim. Biophys. Acta, 1865, 2017
5GIQ
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XAA-PRO PEPTIDASE FROM DEINOCOCCUS RADIODURANS, ZINC BOUND
Descriptor:Proline dipeptidase, PHOSPHATE ION, ZINC ION
Authors:Are, V.N., Singh, R., Kumar, A., Ghosh, B., Jamdar, S.N., Makde, R.D.
Deposit date:2016-06-24
Release date:2017-06-28
Last modified:2019-01-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases.
Proteins, 2018
5GIV
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CRYSTAL STRUCTURE OF M32 CARBOXYPEPTIDASE FROM DEINOCOCCUS RADIODURANS R1
Descriptor:Carboxypeptidase 1, ZINC ION, ACETATE ION
Authors:Sharma, B., Singh, R., Yadav, P., Ghosh, B., Kumar, A., Jamdar, S.N., Makde, R.D.
Deposit date:2016-06-25
Release date:2017-07-12
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Active site gate of M32 carboxypeptidases illuminated by crystal structure and molecular dynamics simulations
Biochim. Biophys. Acta, 1865, 2017
5X49
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CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL X-PROLYL AMINOPEPTIDASE (XPNPEP3)
Descriptor:Probable Xaa-Pro aminopeptidase 3, MANGANESE (II) ION, DODECAETHYLENE GLYCOL, ...
Authors:Singh, R., Kumar, A., Ghosh, B., Jamdar, S., Makde, R.D.
Deposit date:2017-02-10
Release date:2017-05-17
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of the human aminopeptidase XPNPEP3 and comparison of its in vitro activity with Icp55 orthologs: Insights into diverse cellular processes.
J. Biol. Chem., 292, 2017
5XEV
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CRYSTAL STRUCTURE OF A NOVEL XAA-PRO DIPEPTIDASE FROM DEINOCOCCUS RADIODURANS
Descriptor:Xaa-Pro dipeptidase,Peptidase-related protein, ZINC ION, PHOSPHATE ION, ...
Authors:Are, V.N., Kumar, A., Ghosh, B., Makde, R.D.
Deposit date:2017-04-06
Release date:2017-10-18
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a novel prolidase from Deinococcus radiodurans identifies new subfamily of bacterial prolidases.
Proteins, 85, 2017
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