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1A8N
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BU of 1a8n by Molmil
SOLUTION STRUCTURE OF A NA+ CATION STABILIZED DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS FORMED BY G-G-G-C REPEATS OBSERVED IN AAV AND HUMAN CHROMOSOME 19, NMR, 8 STRUCTURES
Descriptor: DNA QUADRUPLEX CONTAINING G.G.G.G AND G.C.G.C TETRADS
Authors:Kettani, A, Bouaziz, S, Gorin, A, Zhao, H, Jones, R, Patel, D.J.
Deposit date:1998-03-27
Release date:1998-10-14
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA.
J.Mol.Biol., 282, 1998
1ULL
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BU of 1ull by Molmil
RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES
Descriptor: REV PEPTIDE, RNA (5'-R (GP*GP*CP*UP*GP*GP*AP*CP*UP*CP*GP*UP*AP*CP*UP*UP*CP*GP* GP*UP*AP*CP*UP*GP*GP*AP*GP*AP*AP*AP*CP*AP*GP*CP*C)-3')
Authors:Ye, X, Gorin, A, Ellington, A.D, Patel, D.J.
Deposit date:1996-11-05
Release date:1997-08-20
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex.
Nat.Struct.Biol., 3, 1996
1JJP
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BU of 1jjp by Molmil
A(GGGG) Pentad-Containing Dimeric DNA Quadruplex Involving Stacked G(anti)G(anti)G(anti)G(syn) Tetrads
Descriptor: 5'-D(*GP*GP*GP*AP*GP*GP*TP*TP*TP*GP*GP*GP*AP*T)-3'
Authors:Zhang, N, Gorin, A, Majumdar, A, Kettani, A, Chernichenko, N, Skripkin, E, Patel, D.J.
Deposit date:2001-07-09
Release date:2001-09-19
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads.
J.Mol.Biol., 311, 2001
1JVC
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BU of 1jvc by Molmil
Dimeric DNA Quadruplex Containing Major Groove-Aligned A.T.A.T and G.C.G.C Tetrads Stabilized by Inter-Subunit Watson-Crick A:T and G:C Pairs
Descriptor: 5'-D(*GP*AP*GP*CP*AP*GP*GP*T)-3'
Authors:Zhang, N, Gorin, A, Majumdar, A, Kettani, A, Chernichenko, N, Skripkin, E, Patel, D.J.
Deposit date:2001-08-29
Release date:2001-10-24
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by inter-subunit Watson-Crick A-T and G-C pairs.
J.Mol.Biol., 312, 2001
1C0Y
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BU of 1c0y by Molmil
SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED OPPOSITE DA AT A TEMPLATE-PRIMER JUNCTION
Descriptor: 2-AMINOFLUORENE, DNA (5'-D(*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*GP*GP*TP*AP*GP*C)-3')
Authors:Gu, Z, Gorin, A, Hingerty, B.E, Broyde, S, Patel, D.J.
Deposit date:1999-07-19
Release date:1999-08-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structures of aminofluorene [AF]-stacked conformers of the syn [AF]-C8-dG adduct positioned opposite dC or dA at a template-primer junction.
Biochemistry, 38, 1999
1EEG
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BU of 1eeg by Molmil
A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE
Descriptor: DNA (5'-D(*GP*GP*AP*GP*GP*A)-3')
Authors:Kettani, A, Gorin, A, Majumdar, A, Hermann, T, Skripkin, E, Zhao, H, Jones, R, Patel, D.J.
Deposit date:2000-01-31
Release date:2000-04-02
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations.
J.Mol.Biol., 297, 2000
1F3S
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BU of 1f3s by Molmil
Solution Structure of DNA Sequence GGGTTCAGG Forms GGGG Tetrade and G(C-A) Triad.
Descriptor: DNA (5'-D(*GP*GP*GP*TP*TP*CP*AP*GP*G)-3')
Authors:Kettani, A, Basu, G, Gorin, A, Majumdar, A, Skripkin, E, Patel, D.J.
Deposit date:2000-06-06
Release date:2000-11-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:A two-stranded template-based approach to G.(C-A) triad formation: designing novel structural elements into an existing DNA framework.
J.Mol.Biol., 301, 2000
1EXY
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BU of 1exy by Molmil
SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET
Descriptor: HTLV-1 REX PEPTIDE, RNA APTAMER, 33-MER
Authors:Jiang, F, Gorin, A, Hu, W, Majumdar, A, Baskerville, S, Xu, W, Ellington, A, Patel, D.J.
Deposit date:2000-05-05
Release date:2000-05-15
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Anchoring an extended HTLV-1 Rex peptide within an RNA major groove containing junctional base triples.
Structure Fold.Des., 7, 1999
1FJ5
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TAMOXIFEN-DNA ADDUCT
Descriptor: (Z)-2-[4-(1,2)-DIPHENYL-1-BUTENYL)-PHENOXY]-N,N-DIMETHYLETHANAMINIUM, DNA (5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3')
Authors:Shimotakahara, S, Gorin, A, Kolbanovskiy, A, Kettani, A, Hingerty, B.E, Amin, S, Broyde, S, Geacintov, N, Patel, D.J.
Deposit date:2000-08-07
Release date:2000-09-11
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Accomodation of S-cis-tamoxifen-N(2)-guanine adduct within a bent and widened DNA minor groove.
J.Mol.Biol., 302, 2000
1A4T
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BU of 1a4t by Molmil
SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES
Descriptor: 20-MER BASIC PEPTIDE, BOXB RNA
Authors:Cai, Z, Gorin, A.A, Frederick, R, Ye, X, Hu, W, Majumdar, A, Kettani, A, Patel, D.J.
Deposit date:1998-02-04
Release date:1998-04-29
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of P22 transcriptional antitermination N peptide-boxB RNA complex.
Nat.Struct.Biol., 5, 1998
1AXL
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BU of 1axl by Molmil
SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG)
Authors:Feng, B, Gorin, A.A, Kolbanovskiy, A, Hingerty, B.E, Geacintov, N.E, Broyde, S, Patel, D.J.
Deposit date:1997-10-16
Release date:1998-07-01
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove.
Biochemistry, 36, 1997
484D
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BU of 484d by Molmil
SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX
Descriptor: BASIC REV PEPTIDE, RNA APTAMER
Authors:Ye, X, Gorin, A.A, Frederick, R, Hu, W, Majumdar, A, Xu, W, Mclendon, G, Ellington, A, Patel, D.J.
Deposit date:1999-08-02
Release date:1999-10-14
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:RNA architecture dictates the conformations of a bound peptide.
Chem.Biol., 6, 1999
1AX6
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BU of 1ax6 by Molmil
SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES
Descriptor: 2-AMINOFLUORENE, DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG)
Authors:Mao, B, Gorin, A.A, Gu, Z, Hingerty, B.E, Broyde, S, Patel, D.J.
Deposit date:1997-10-30
Release date:1998-07-01
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the aminofluorene-intercalated conformer of the syn [AF]-C8-dG adduct opposite a--2 deletion site in the NarI hot spot sequence context.
Biochemistry, 36, 1997
1AXO
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BU of 1axo by Molmil
STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC)
Authors:Feng, B, Gorin, A.A, Hingerty, B.E, Geacintov, N.E, Broyde, S, Patel, D.J.
Deposit date:1997-10-16
Release date:1998-07-01
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Structural alignment of the (+)-trans-anti-benzo[a]pyrene-dG adduct positioned opposite dC at a DNA template-primer junction.
Biochemistry, 36, 1997
1AXV
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BU of 1axv by Molmil
SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA DUPLEX D(CTCTC-[BP]A-CTTCC)D(GGAAGTGAGAG)
Authors:Mao, B, Gu, Z, Gorin, A.A, Chen, J, Hingerty, B.E, Amid, S, Broyde, S, Geacintov, N.E, Patel, D.J.
Deposit date:1997-10-21
Release date:1998-07-01
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex.
Biochemistry, 38, 1999
1AXU
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BU of 1axu by Molmil
SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES
Descriptor: DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG), N-1-AMINOPYRENE
Authors:Gu, Z, Gorin, A.A, Krishnasami, R, Hingerty, B.E, Basu, A.K, Broyde, S, Patel, D.J.
Deposit date:1997-10-21
Release date:1998-07-01
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex.
Biochemistry, 38, 1999
1AX7
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BU of 1ax7 by Molmil
SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES
Descriptor: 2-AMINOFLUORENE, DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG)
Authors:Mao, B, Gu, Z, Gorin, A.A, Hingerty, B.E, Broyde, S, Patel, D.J.
Deposit date:1997-10-30
Release date:1998-07-01
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the aminofluorene-stacked conformer of the syn [AF]-C8-dG adduct positioned at a template-primer junction.
Biochemistry, 36, 1997

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