Author results

101D
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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN
Authors:Goodsell, D.S., Kopka, M.L., Dickerson, R.E.
Deposit date:1994-12-14
Release date:1995-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry, 34, 1995
126D
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CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Goodsell, D.S., Kopka, M.L., Cascio, D., Dickerson, R.E.
Deposit date:1993-06-14
Release date:1993-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
167D
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THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS
Descriptor:DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3')
Authors:Goodsell, D.S., Kaczor-Grzeskowiak, M., Dickerson, R.E.
Deposit date:1994-04-04
Release date:1994-08-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
J.Mol.Biol., 239, 1994
196D
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CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION
Descriptor:DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3'), CALCIUM ION
Authors:Goodsell, D.S., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1994-11-07
Release date:1995-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.
Biochemistry, 34, 1995
1LEX
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
1LEY
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STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 2)
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S., Ng, H.L., Kopka, M.L., Lown, J.W., Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
158D
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CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA
Descriptor:DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3'), CALCIUM ION
Authors:Grzeskowiak, K., Goodsell, D.S., Kaczor-Grzeskowiak, M., Cascio, D., Dickerson, R.E.
Deposit date:1994-02-03
Release date:1994-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.
Biochemistry, 32, 1993
1D30
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THE STRUCTURE OF DAPI BOUND TO DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
Authors:Larsen, T., Goodsell, D.S., Cascio, D., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1991-01-04
Release date:1992-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of DAPI bound to DNA.
J.Biomol.Struct.Dyn., 7, 1989
1ZP8
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HIV PROTEASE WITH INHIBITOR AB-2
Descriptor:Pol polyprotein, [1-((1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL)-1H-1,2,3-TRIAZOL-4-YL]METHYL (1R,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YLCARBAMATE
Authors:Brik, A., Alexandratos, J.N., Elder, J.H., Olson, A.J., Wlodawer, A., Goodsell, D.S., Wong, C.H.
Deposit date:2005-05-16
Release date:2005-06-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors.
Chembiochem, 6, 2005
1ZPA
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HIV PROTEASE WITH SCRIPPS AB-3 INHIBITOR
Descriptor:Pol polyprotein, TERT-BUTYL 4-[({[1-((1S,2R)-1-BENZYL-2-HYDROXY-3-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}PROPYL)-1H-1,2,3-TRIAZOL-4-YL]METHYL}AMINO)CARBONYL]BENZYLCARBAMATE
Authors:Brik, A., Alexandratos, J., Lin, Y.C., Elder, J.H., Olson, A.J., Wlodawer, A., Goodsell, D.S., Wong, C.H.
Deposit date:2005-05-16
Release date:2005-05-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:1,2,3-triazole as a peptide surrogate in the rapid synthesis of HIV-1 protease inhibitors
Chembiochem, 6, 2005
274D
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CRYSTAL STRUCTURE OF A COVALENT DNA-DRUG ADDUCT: ANTHRAMYCIN BOUND TO C-C-A-A-C-G-T-T-G-G, AND A MOLECULAR EXPLANATION OF SPECIFICITY
Descriptor:DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*(DRUG)GP*G)-3'), ANTHRAMYCIN
Authors:Kopka, M.L., Goodsell, D.S., Baikalov, I., Grzeskowiak, K., Cascio, D., Dickerson, R.E.
Deposit date:1994-04-28
Release date:1994-10-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.
Biochemistry, 33, 1994
334D
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DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Descriptor:DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3'), DIIMIDAZOLE LEXITROPSIN, CALCIUM ION
Authors:Kopka, M.L., Goodsell, D.S., Dickerson, R.E.
Deposit date:1997-05-22
Release date:1997-08-29
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
8BNA
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BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, MAGNESIUM ION
Authors:Pjura, P.E., Grzeskowiak, K., Dickerson, R.E.
Deposit date:1986-08-29
Release date:1987-01-15
Last modified:2014-07-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
1DN9
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STRUCTURE OF AN ALTERNATING-B DNA HELIX AND ITS RELATIONSHIP TO A-TRACT DNA
Descriptor:DNA (5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*TP*GP*CP*G)-3')
Authors:Yoon, C., Dickerson, R.E.
Deposit date:1989-04-25
Release date:1990-04-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of an alternating-B DNA helix and its relationship to A-tract DNA.
Proc.Natl.Acad.Sci.USA, 85, 1988
252D
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CRYSTAL STRUCTURE OF THE B-DNA DECAMER D(CGCAATTGCG)2; SEQUENCE-DEPENDENT CROSSED HELIX PACKING
Descriptor:DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3')
Authors:Wood, A.A., Nunn, C.M., Trent, J.O., Neidle, S.
Deposit date:1996-03-07
Release date:1996-04-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Sequence-dependent crossed helix packing in the crystal structure of a B-DNA decamer yields a detailed model for the Holliday junction.
J.Mol.Biol., 269, 1997