Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8QME
DownloadVisualize
BU of 8qme by Molmil
Structural characterization of beta-xyloxidase XynB2 from Geobacillus stearothermophilus CECT43
Descriptor: ACETATE ION, Beta-xylosidase, GLYCEROL, ...
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2023-09-22
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Characterization of beta-Xylosidase XynB2 from Geobacillus stearothermophilus CECT43: A Member of the Glycoside Hydrolase Family GH52
Crystals, 14, 2024
2OLP
DownloadVisualize
BU of 2olp by Molmil
Structure and ligand selection of hemoglobin II from Lucina pectinata
Descriptor: Hemoglobin II, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Gavira, J.A, Camara-Artigas, A, de Jesus, W, Lopez-Garriga, J, Garcia-Ruiz, J.M.
Deposit date:2007-01-19
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.932 Å)
Cite:Structure and Ligand Selection of Hemoglobin II from Lucina pectinata
J.Biol.Chem., 283, 2008
5T65
DownloadVisualize
BU of 5t65 by Molmil
LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE
Descriptor: ACETATE ION, ISOLEUCINE, Methyl-accepting chemotaxis protein PctA, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-01
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
5T7M
DownloadVisualize
BU of 5t7m by Molmil
LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-TRP
Descriptor: ACETATE ION, Chemotaxis protein, SODIUM ION, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-05
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
5LT9
DownloadVisualize
BU of 5lt9 by Molmil
Ligand binding domain of Pseudomonas aeruginosa PAO1 amino acid chemoreceptors PctB in complex with L-Arg
Descriptor: ARGININE, GLYCEROL, Methyl-accepting chemotaxis protein PctB, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-06
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
5LTO
DownloadVisualize
BU of 5lto by Molmil
Ligand binding domain of Pseudomonas aeruginosa PAO1 amino acid chemoreceptors PctB in complex with L-Gln
Descriptor: GLUTAMINE, GLYCEROL, Methyl-accepting chemotaxis protein PctB, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Conejero-Muriel, M, Krell, T.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.459 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
2BDZ
DownloadVisualize
BU of 2bdz by Molmil
Mexicain from Jacaratia mexicana
Descriptor: Mexicain, N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE
Authors:Gavira, J.A, Oliver-Salvador, M.C, Gonzalez-Ramirez, L.A, Soriano-Garcia, M, Garcia-Ruiz, J.M.
Deposit date:2005-10-21
Release date:2006-10-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic structure of Mexicain from Jacaratia mexicana
To be Published
5LTX
DownloadVisualize
BU of 5ltx by Molmil
LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-MET
Descriptor: ACETATE ION, Chemotaxis protein, FORMIC ACID, ...
Authors:Gavira, J.A, Rico-Gimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
5LTV
DownloadVisualize
BU of 5ltv by Molmil
LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECPETOR PCTC IN COMPLEX WITH GABA
Descriptor: ACETATE ION, Chemotactic transducer PctC, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Conejero-Muriel, M, Krell, T.
Deposit date:2016-09-07
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
1Z2U
DownloadVisualize
BU of 1z2u by Molmil
The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance
Descriptor: (R,R)-2,3-BUTANEDIOL, CHLORIDE ION, SODIUM ION, ...
Authors:Gavira, J.A, DiGiamamarino, E, Tempel, W, Liu, Z.J, Wang, B.C, Meehan, E, Ng, J.D, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2005-03-09
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance
To be published
1Z3D
DownloadVisualize
BU of 1z3d by Molmil
Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans
Descriptor: Ubiquitin-conjugating enzyme E2 1
Authors:Gavira, J.A, DiGiammarino, E, Tempel, W, Toh, D, Liu, Z.J, Wang, B.C, Meehan, E, Ng, J.D, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2005-03-11
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Protein crystal growth improvement leading to the 2.5A crystallographic structure of ubiquitin-conjugating enzyme (ubc-1) from Caenorhabditis elegans
To be Published
1ZZY
DownloadVisualize
BU of 1zzy by Molmil
Crystal Structure of Thioredoxin Mutant L7V
Descriptor: Thioredoxin 1
Authors:Gavira, J.A, Perez-Jimenez, R, Ibarra-Molero, B, Sanchez-Ruiz, J.M.
Deposit date:2005-06-15
Release date:2005-07-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Thioredoxin Mutant L7V
To be Published
6S33
DownloadVisualize
BU of 6s33 by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP in complex with Protocatechuate
Descriptor: 3,4-DIHYDROXYBENZOIC ACID, ACETATE ION, Aromatic acid chemoreceptor
Authors:Gavira, J.A, Mantilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-24
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
6S38
DownloadVisualize
BU of 6s38 by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP in complex with quinate
Descriptor: (1S,3R,4S,5R)-1,3,4,5-tetrahydroxycyclohexanecarboxylic acid, Aromatic acid chemoreceptor
Authors:Gavira, J.A, Mantilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-24
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
6S37
DownloadVisualize
BU of 6s37 by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP in complex with salicylic acid
Descriptor: 2-HYDROXYBENZOIC ACID, ACETATE ION, Aromatic acid chemoreceptor
Authors:Gavira, J.A, Mantilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-24
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
6F9G
DownloadVisualize
BU of 6f9g by Molmil
Ligand binding domain of P. putida KT2440 polyamine chemorecpetors McpU in complex putrescine.
Descriptor: 1,4-DIAMINOBUTANE, ACETATE ION, GLYCEROL, ...
Authors:Gavira, J.A, Conejero-Muriel, M.T, Ortega, A, Martin-Mora, D, Corral-Lugo, A, Morel, B, Krell, T.
Deposit date:2017-12-14
Release date:2018-03-28
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.388 Å)
Cite:Structural Basis for Polyamine Binding at the dCACHE Domain of the McpU Chemoreceptor from Pseudomonas putida.
J. Mol. Biol., 430, 2018
6YC5
DownloadVisualize
BU of 6yc5 by Molmil
RT structure of Thaumatin obtained at 1.35 A resolution from crystal grown in a Kapton microchip.
Descriptor: L(+)-TARTARIC ACID, SODIUM ION, Thaumatin-1
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2020-03-18
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBI
DownloadVisualize
BU of 6ybi by Molmil
RT structure of HEW Lysozyme obtained at 1.12 A resolution from crystal grown in a Mylar microchip.
Descriptor: CHLORIDE ION, Lysozyme, SODIUM ION
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2020-03-17
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBO
DownloadVisualize
BU of 6ybo by Molmil
RT structure of Glucose Isomerase obtained at 1.06 A resolution from crystal grown in a Kapton microchip.
Descriptor: MAGNESIUM ION, SODIUM ION, Xylose isomerase
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2020-03-17
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBX
DownloadVisualize
BU of 6ybx by Molmil
RT structure of Thaumatin obtained at 1.14 A resolution from crystal grown in a Mylar microchip.
Descriptor: L(+)-TARTARIC ACID, SODIUM ION, Thaumatin-1
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2020-03-18
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6YBR
DownloadVisualize
BU of 6ybr by Molmil
RT structure of Glucose Isomerase obtained at 1.20 A resolution from crystal grown in a Mylar microchip.
Descriptor: MAGNESIUM ION, SODIUM ION, Xylose isomerase
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2020-03-17
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Attaining atomic resolution from in situ data collection at room temperature using counter-diffusion-based low-cost microchips.
Acta Crystallogr D Struct Biol, 76, 2020
6S18
DownloadVisualize
BU of 6s18 by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP in complex with glycerol
Descriptor: Aromatic acid chemoreceptor, CHLORIDE ION, GLYCEROL
Authors:Gavira, J.A, Mantilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-18
Release date:2020-10-21
Last modified:2021-04-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
6S1A
DownloadVisualize
BU of 6s1a by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP
Descriptor: Aromatic acid chemoreceptor, SULFATE ION
Authors:Gavira, J.A, Matilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-18
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.112 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
6S3B
DownloadVisualize
BU of 6s3b by Molmil
Ligand binding domain of the P. putida receptor PcaY_PP in complex with benzoate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Aromatic acid chemoreceptor, ...
Authors:Gavira, J.A, Mantilla, M.A, Fernandez, M, Krell, T.
Deposit date:2019-06-24
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The structural basis for signal promiscuity in a bacterial chemoreceptor.
Febs J., 288, 2021
7PTJ
DownloadVisualize
BU of 7ptj by Molmil
C54S mutant of choline-sulfatase from E. meliloti CECT4857 bound to HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Choline sulfatase, ...
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2021-09-27
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into choline-O-sulfatase reveal the molecular determinants for ligand binding.
Acta Crystallogr D Struct Biol, 78, 2022

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon