Author results

1YYK
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CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.5-ANGSTROM RESOLUTION
Descriptor:5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YYO
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CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE-STRANDED RNA AT 2.9-ANGSTROM RESOLUTION
Descriptor:5'-R(*CP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YYW
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CRYSTAL STRUCTURE OF RNASE III FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.8-ANGSTROM RESOLUTION
Descriptor:5'-R(*AP*AP*AP*UP*AP*UP*AP*UP*AP*UP*UP*U)-3', Ribonuclease III
Authors:Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X.
Deposit date:2005-02-25
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
1YZ9
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CRYSTAL STRUCTURE OF RNASE III MUTANT E110Q FROM AQUIFEX AEOLICUS COMPLEXED WITH DOUBLE STRANDED RNA AT 2.1-ANGSTROM RESOLUTION
Descriptor:5'-R(*CP*GP*AP*AP*CP*UP*UP*CP*GP*CP*G)-3', Ribonuclease III, SULFATE ION
Authors:Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X.
Deposit date:2005-02-28
Release date:2005-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Intermediate states of ribonuclease III in complex with double-stranded RNA
Structure, 13, 2005
2EZ6
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CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS RNASE III (D44N) COMPLEXED WITH PRODUCT OF DOUBLE-STRANDED RNA PROCESSING
Descriptor:28-MER, Ribonuclease III, MAGNESIUM ION
Authors:Gan, J., Tropea, J.E., Austin, B.P., Court, D.L., Waugh, D.S., Ji, X.
Deposit date:2005-11-10
Release date:2006-02-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insight into the Mechanism of Double-Stranded RNA Processing by Ribonuclease III.
Cell(Cambridge,Mass.), 124, 2006
2G1J
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CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE KINASE AT 2.0 ANGSTROM RESOLUTION
Descriptor:Shikimate kinase, SULFATE ION
Authors:Gan, J., Gu, Y., Li, Y., Yan, H., Ji, X.
Deposit date:2006-02-14
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue.
Biochemistry, 45, 2006
2G1K
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CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATE KINASE IN COMPLEX WITH SHIKIMATE AT 1.75 ANGSTROM RESOLUTION
Descriptor:Shikimate kinase, SULFATE ION, CHLORIDE ION, ...
Authors:Gan, J., Gu, Y., Li, Y., Yan, H., Ji, X.
Deposit date:2006-02-14
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure of Mycobacterium tuberculosis Shikimate Kinase in Complex with Shikimic Acid and an ATP Analogue.
Biochemistry, 45, 2006
5JRE
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CRYSTAL STRUCTURE OF NEC3PO IN COMPLEX WITH SSDNA.
Descriptor:NEQ131, ssDNA, ADENINE, ...
Authors:Gan, J., Zhang, J.
Deposit date:2016-05-06
Release date:2016-09-28
Last modified:2016-11-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for single-stranded RNA recognition and cleavage by C3PO
Nucleic Acids Res., 44, 2016
4M2Z
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CRYSTAL STRUCTURE OF RNASE III COMPLEXED WITH DOUBLE-STRANDED RNA AND CMP (TYPE II CLEAVAGE)
Descriptor:Ribonuclease 3, RNA10, MAGNESIUM ION, ...
Authors:Gan, J., Liang, Y.-H., Shaw, G.X., Tropea, J.E., Waugh, D.S., Ji, X.
Deposit date:2013-08-05
Release date:2013-12-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
4M30
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CRYSTAL STRUCTURE OF RNASE III COMPLEXED WITH DOUBLE-STRANDED RNA AND AMP (TYPE II CLEAVAGE)
Descriptor:Ribonuclease 3, RNA12, MAGNESIUM ION, ...
Authors:Gan, J., Liang, Y.-H., Shaw, G.X., Tropea, J.E., Waugh, D.S., Ji, X.
Deposit date:2013-08-05
Release date:2013-12-11
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:RNase III: Genetics and Function; Structure and Mechanism.
Annu. Rev. Genet., 47, 2013
5J2Y
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MOLECULAR INSIGHT INTO THE REGULATORY MECHANISM OF THE QUORUM-SENSING REPRESSOR RSAL IN PSEUDOMONAS AERUGINOSA
Descriptor:Regulatory protein, DNA (26-MER)
Authors:Zhao, J., Gan, J., Zhang, J., Kang, H., Kong, W., Zhu, M., Li, F., Song, Y., Qin, J., Liang, H.
Deposit date:2016-03-30
Release date:2017-04-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular insight into the regulatory mechanism of the quorum-sensing repressor RsaL in Pseudomonas aeruginosa
To Be Published
5Z9X
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ARABIDOPSIS SMALL RNA DEGRADING NUCLEASE 1 IN COMPLEX WITH AN RNA SUBSTRATE
Descriptor:Small RNA degrading nuclease 1, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ...
Authors:Chen, J., Liu, L., You, C., Gu, J., Ruan, W., Zhang, L., Gan, J., Cao, C., Huang, Y., Chen, X., Ma, J.
Deposit date:2018-02-05
Release date:2018-06-27
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.
Nat Commun, 9, 2018
5Z9Z
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THE C-TERMINAL RRM DOMAIN OF ARABIDOPSIS SMALL RNA DEGRADING NUCLEASE 1 (E329A/E330A/E332A)
Descriptor:Small RNA degrading nuclease 1, CITRATE ANION
Authors:Chen, J., Liu, L., You, C., Gu, J., Ruan, W., Zhang, L., Cao, C., Gan, J., Huang, Y., Chen, X., Ma, J.
Deposit date:2018-02-05
Release date:2018-06-27
Last modified:2018-10-03
Method:X-RAY DIFFRACTION (2.049 Å)
Cite:Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.
Nat Commun, 9, 2018
1RC5
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CRYSTAL STRUCTURE OF MG(II)-COMPLEX OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.30 ANGSTROM RESOLUTION
Descriptor:Ribonuclease III, MAGNESIUM ION
Authors:Blaszczyk, J., Gan, J., Ji, X.
Deposit date:2003-11-03
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA.
Structure, 12, 2004
1RC7
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CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.15 ANGSTROM RESOLUTION
Descriptor:5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', Ribonuclease III, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Blaszczyk, J., Gan, J., Ji, X.
Deposit date:2003-11-03
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA.
Structure, 12, 2004
3IFF
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2'-SEME-A MODIFIED DNA DECAMER
Descriptor:DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*(XUA)P*C)-3'), MAGNESIUM ION
Authors:Sheng, J., Gan, J., Salon, J., Huang, Z.
Deposit date:2009-07-24
Release date:2009-08-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Selenium modification at 2'-position of adenosine for nucleic acid structure studies
To be Published
3IFI
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2'-SEME-DG MODIFIED OCTAMER DNA
Descriptor:DNA (5'-D(*GP*TP*(XUG)P*TP*AP*CP*AP*C)-3')
Authors:Sheng, J., Gan, J., Salon, J., Huang, Z.
Deposit date:2009-07-24
Release date:2009-08-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Synthesis and crystal structure of 2'-se-modified guanosine containing DNA.
J.Org.Chem., 75, 2010
3IJK
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5-OME MODIFIED DNA 8MER
Descriptor:5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3'
Authors:Sheng, J., Zhang, W., Hassan, A.E.A., Gan, J., Huang, Z.
Deposit date:2009-08-04
Release date:2009-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:5-OMe modified DNA 8mer
TO BE PUBLISHED
3IJN
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5-SEME-CYTIDINE MODIFIED DNA 8MER
Descriptor:5'-D(*GP*(UMS)P*GP*TP*AP*(5SE)P*AP*C)-3'
Authors:Sheng, J., Zhang, W., Hassan, A.E.A., Gan, J., Huang, Z.
Deposit date:2009-08-04
Release date:2009-10-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:5-SeMe-Cytidine modified DNA 8mer
TO BE PUBLISHED
3IKI
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5-SME-DU CONTAINING DNA OCTAMER
Descriptor:5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3', MAGNESIUM ION
Authors:Sheng, J., Hassan, A.E.A., Zhang, W., Gan, J., Huang, Z.
Deposit date:2009-08-05
Release date:2010-03-09
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
3LTR
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5-OME-DU CONTAINING DNA 8MER
Descriptor:5'-D(*GP*(UMS)P*GP*(T5O)P*AP*CP*AP*C)-3', MAGNESIUM ION
Authors:Sheng, J., Hassan, A.E.A., Zhang, W., Gan, J., Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
3LTU
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5-SEME-DU CONTAINING DNA 8MER
Descriptor:5'-D(*GP*(UMS)P*GP*(T5S)P*AP*CP*AP*C)-3'
Authors:Sheng, J., Hassan, A.E.A., Zhang, W., Gan, J., Huang, Z.
Deposit date:2010-02-16
Release date:2010-03-09
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone.
Nucleic Acids Res., 40, 2012
3S49
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RNA CRYSTAL STRUCTURE WITH 2-SE-URIDINE MODIFICATION
Descriptor:RNA (5'-R(*GP*UP*AP*UP*AP*(RUS)P*AP*C)-3'), POTASSIUM ION
Authors:Sheng, J., Gan, J., Sun, H., Hassan, A.E.H., Jiang, S., Huang, Z.
Deposit date:2011-05-19
Release date:2011-06-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Higher Specificity of RNA Base Pairing with 2-Selenouridine
To be Published
4IQS
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RNA 8MER DUPLEX MODIFIED WITH 4-SE-URIDINE
Descriptor:RNA (5'-R(*GP*UP*GP*(S5)P*AP*CP*AP*C)-3')
Authors:Sheng, J., Gan, J., Soares, A., Huang, Z.
Deposit date:2013-01-13
Release date:2013-12-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom.
Nucleic Acids Res., 41, 2013
4KW0
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STRUCTURE OF DICKERSON-DREW DODECAMER WITH 2'-MESE-ARA-G MODIFICATION
Descriptor:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(1TW)P*CP*G)-3'), MAGNESIUM ION
Authors:Jiang, S., Gan, J., Sheng, J., Sun, H., Huang, Z.
Deposit date:2013-05-23
Release date:2013-07-17
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification
TO BE PUBLISHED