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3O0R
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Crystal structure of nitric oxide reductase from Pseudomonas aeruginosa in complex with antibody fragment
Descriptor: CALCIUM ION, FE (III) ION, HEME C, ...
Authors:Hino, T, Matsumoto, Y, Nagano, S, Sugimoto, H, Fukumori, Y, Murata, T, Iwata, S, Shiro, Y.
Deposit date:2010-07-20
Release date:2010-12-29
Last modified:2013-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of biological N2O generation by bacterial nitric oxide reductase
Science, 330, 2010
1FJD
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BU of 1fjd by Molmil
HUMAN PARVULIN-LIKE PEPTIDYL PROLYL CIS/TRANS ISOMERASE, HPAR14
Descriptor: PEPTIDYL PROLYL CIS/TRANS ISOMERASE (PPIASE)
Authors:Terada, T, Shirouzu, M, Fukumori, Y, Fujimori, F, Ito, Y, Kigawa, T, Yokoyama, S, Uchida, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-08-08
Release date:2001-08-08
Last modified:2021-11-03
Method:SOLUTION NMR
Cite:Solution structure of the human parvulin-like peptidyl prolyl cis/trans isomerase, hPar14.
J.Mol.Biol., 305, 2001
2D2M
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BU of 2d2m by Molmil
Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi
Descriptor: Giant hemoglobin, A1(b) globin chain, A2(a5) globin chain, ...
Authors:Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K.
Deposit date:2005-09-12
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi.
Proc.Natl.Acad.Sci.USA, 102, 2005
2D2N
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BU of 2d2n by Molmil
Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi
Descriptor: Giant hemoglobin, A1(b) globin chain, A2(a5) globin chain, ...
Authors:Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K.
Deposit date:2005-09-12
Release date:2005-10-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi.
Proc.Natl.Acad.Sci.USA, 102, 2005
2ZFO
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BU of 2zfo by Molmil
Structure of the partially unliganded met state of 400 kDa hemoglobin: Insights into ligand-induced structural changes of giant hemoglobins
Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B1, ...
Authors:Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K.
Deposit date:2008-01-08
Release date:2008-04-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the partially unliganded met state of 400 kDa hemoglobin: insights into ligand-induced structural changes of giant hemoglobins
Proteins, 73, 2008
2ZS0
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BU of 2zs0 by Molmil
Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin
Descriptor: CALCIUM ION, CHLORIDE ION, Extracellular giant hemoglobin major globin subunit A1, ...
Authors:Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K.
Deposit date:2008-09-02
Release date:2008-10-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin
Biochemistry, 47, 2008
2ZS1
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BU of 2zs1 by Molmil
Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin
Descriptor: CHLORIDE ION, Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, ...
Authors:Numoto, N, Nakagawa, T, Kita, A, Sasayama, Y, Fukumori, Y, Miki, K.
Deposit date:2008-09-02
Release date:2008-10-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin
Biochemistry, 47, 2008
3WFE
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BU of 3wfe by Molmil
Reduced and cyanide-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Descriptor: CALCIUM ION, CYANIDE ION, FE (III) ION, ...
Authors:Sato, N, Ishii, S, Hino, T, Sugimoto, H, Fukumori, Y, Shiro, Y, Tosha, T.
Deposit date:2013-07-18
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes.
Proteins, 82, 2014
3WFC
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BU of 3wfc by Molmil
Reduced and carbonmonoxide-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Descriptor: CALCIUM ION, CARBON MONOXIDE, FE (III) ION, ...
Authors:Sato, N, Ishii, S, Hino, T, Sugimoto, H, Fukumori, Y, Shiro, Y, Tosha, T.
Deposit date:2013-07-18
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes.
Proteins, 82, 2014
3WFD
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BU of 3wfd by Molmil
Reduced and acetaldoxime-bound cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Descriptor: (1E)-N-hydroxyethanimine, CALCIUM ION, FE (III) ION, ...
Authors:Sato, N, Ishii, S, Hino, T, Sugimoto, H, Fukumori, Y, Shiro, Y, Tosha, T.
Deposit date:2013-07-18
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes.
Proteins, 82, 2014
7E99
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BU of 7e99 by Molmil
Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 13% oxygen saturation
Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ...
Authors:Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-03-03
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state.
Iucrj, 8, 2021
7E97
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BU of 7e97 by Molmil
Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 58% oxygen saturation
Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ...
Authors:Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-03-03
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state.
Iucrj, 8, 2021
7E98
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BU of 7e98 by Molmil
Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 21% oxygen saturation
Descriptor: Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ...
Authors:Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-03-03
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state.
Iucrj, 8, 2021
7E96
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BU of 7e96 by Molmil
Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 69% oxygen saturation
Descriptor: CALCIUM ION, Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, ...
Authors:Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-03-03
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state.
Iucrj, 8, 2021
7VLC
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BU of 7vlc by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 78% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLD
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BU of 7vld by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 69% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLF
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BU of 7vlf by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 26% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLE
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BU of 7vle by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 55% oxygen saturation
Descriptor: Extracellular A1 globin, Extracellular A2 globin, Extracellular B1 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
3WFB
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BU of 3wfb by Molmil
Reduced cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with antibody fragment
Descriptor: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
Authors:Sato, N, Ishii, S, Hino, T, Sugimoto, H, Fukumori, Y, Shiro, Y, Tosha, T.
Deposit date:2013-07-18
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes.
Proteins, 82, 2014
3WCU
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BU of 3wcu by Molmil
The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Deoxygenated form
Descriptor: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
Authors:Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
Deposit date:2013-06-01
Release date:2014-06-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCV
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The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: CA bound form
Descriptor: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
Authors:Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
Deposit date:2013-06-01
Release date:2014-06-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCW
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The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: MG bound form
Descriptor: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
Authors:Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
Deposit date:2013-06-01
Release date:2014-06-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCT
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BU of 3wct by Molmil
The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Oxygenated form
Descriptor: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
Authors:Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
Deposit date:2013-06-01
Release date:2014-06-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
5GUX
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BU of 5gux by Molmil
Cytochrome c-dependent nitric oxide reductase (cNOR) from Pseudomonas aeruginosa in complex with xenon
Descriptor: Antibody fab fragment heavy chain, Antibody fab fragment light chain, CALCIUM ION, ...
Authors:Ishii, S, Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GUW
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Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas aeruginosa
Descriptor: CALCIUM ION, CHLORIDE ION, FE (III) ION, ...
Authors:Terasaka, E, Sugimoto, H, Shiro, Y, Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

 

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