Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5B42
DownloadVisualize
BU of 5b42 by Molmil
Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL.
Descriptor: CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL
Authors:Fukui, K, Baba, S, Kumasaka, T, Yano, T.
Deposit date:2016-03-30
Release date:2016-07-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural Features and Functional Dependency on beta-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL
J.Biol.Chem., 291, 2016
2ZQE
DownloadVisualize
BU of 2zqe by Molmil
Crystal structure of the Smr domain of Thermus thermophilus MutS2
Descriptor: MutS2 protein
Authors:Fukui, K, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S.
Deposit date:2008-08-08
Release date:2008-09-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression
J.Biol.Chem., 283, 2008
8H1E
DownloadVisualize
BU of 8h1e by Molmil
Aquifex aeolicus MutL endonuclease domain complexed with manganese ions
Descriptor: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, MANGANESE (II) ION
Authors:Fukui, K, Yano, T.
Deposit date:2022-10-03
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.
Life Sci Alliance, 6, 2023
8H1G
DownloadVisualize
BU of 8h1g by Molmil
The R406T mutant form of the Aquifex aeolicus MutL endonuclease domain
Descriptor: CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
Authors:Fukui, K, Yano, T.
Deposit date:2022-10-03
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.
Life Sci Alliance, 6, 2023
8H1F
DownloadVisualize
BU of 8h1f by Molmil
Aquifex aeolicus MutL endonuclease domain complexed with zinc ions after soaking
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
Authors:Fukui, K, Yano, T.
Deposit date:2022-10-03
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.
Life Sci Alliance, 6, 2023
7VUF
DownloadVisualize
BU of 7vuf by Molmil
Crystal Structure of the core region of Thermus thermophilus MutS2.
Descriptor: DI(HYDROXYETHYL)ETHER, Endonuclease MutS2, MAGNESIUM ION
Authors:Fukui, K, Yano, T.
Deposit date:2021-11-02
Release date:2022-04-06
Last modified:2022-10-19
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural and functional insights into the mechanism by which MutS2 recognizes a DNA junction.
Structure, 30, 2022
7VUK
DownloadVisualize
BU of 7vuk by Molmil
Crystal Structure of the core region of Thermus thermophilus MutS2 complexed with ADP.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fukui, K, Yano, T.
Deposit date:2021-11-02
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:Structural and functional insights into the mechanism by which MutS2 recognizes a DNA junction.
Structure, 30, 2022
5X9Y
DownloadVisualize
BU of 5x9y by Molmil
Crystal structure of the ATPase domain from bacterial mismatch repair endonuclease Aquifex aeolicus MutL.
Descriptor: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL
Authors:Fukui, K, Yano, T.
Deposit date:2017-03-10
Release date:2017-08-30
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.443 Å)
Cite:Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus
Biochim. Biophys. Acta, 1865, 2017
5Z41
DownloadVisualize
BU of 5z41 by Molmil
Aquifex aeolicus MutL endonuclease domain with a single zinc ion.
Descriptor: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, MAGNESIUM ION, ...
Authors:Fukui, K, Yano, T.
Deposit date:2018-01-10
Release date:2018-04-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus
FEBS Lett., 592, 2018
5Z42
DownloadVisualize
BU of 5z42 by Molmil
Aquifex aeolicus MutL endonuclease domain with three zinc ions.
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
Authors:Fukui, K, Yano, T.
Deposit date:2018-01-10
Release date:2018-04-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus
FEBS Lett., 592, 2018
6LZJ
DownloadVisualize
BU of 6lzj by Molmil
Aquifex aeolicus MutL ATPase domain complexed with AMPPCP
Descriptor: DNA mismatch repair protein MutL, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Authors:Fukui, K, Izuhara, K, Yano, T.
Deposit date:2020-02-19
Release date:2020-07-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.72835565 Å)
Cite:A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL.
J.Biol.Chem., 295, 2020
6LZI
DownloadVisualize
BU of 6lzi by Molmil
Aquifex aeolicus MutL ATPase domain complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
Authors:Fukui, K, Izuhara, K, Yano, T.
Deposit date:2020-02-19
Release date:2020-07-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.69105685 Å)
Cite:A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL.
J.Biol.Chem., 295, 2020
6LZK
DownloadVisualize
BU of 6lzk by Molmil
Aquifex aeolicus MutL ATPase domain with K252N mutation
Descriptor: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, SODIUM ION
Authors:Fukui, K, Izuhara, K, Yano, T.
Deposit date:2020-02-19
Release date:2020-07-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.15949631 Å)
Cite:A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL.
J.Biol.Chem., 295, 2020
4U4P
DownloadVisualize
BU of 4u4p by Molmil
Crystal structure of the human condensin SMC hinge domain heterodimer with short coiled coils
Descriptor: Structural maintenance of chromosomes protein 2, Structural maintenance of chromosomes protein 4
Authors:Uchiyama, S, Kawahara, K, Hosokawa, Y, Fukakusa, S, Oki, H, Nakamura, S, Noda, M, Takino, R, Miyahara, Y, Maruno, T, Kobayashi, Y, Ohkubo, T, Fukui, K.
Deposit date:2014-07-24
Release date:2015-08-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for dimer information and DNA recognition of human SMC proteins
to be published
5H45
DownloadVisualize
BU of 5h45 by Molmil
Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms
Descriptor: DNA repair protein RadA
Authors:Inoue, M, Fukui, K, Fujii, Y, Nakagawa, N, Yano, T, Kuramitsu, S, Masui, R.
Deposit date:2016-10-30
Release date:2017-05-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.
J. Biol. Chem., 292, 2017
3A4U
DownloadVisualize
BU of 3a4u by Molmil
Crystal structure of MCFD2 in complex with carbohydrate recognition domain of ERGIC-53
Descriptor: CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ...
Authors:Nishio, M, Kamiya, Y, Mizushima, T, Wakatsuki, S, Sasakawa, H, Yamamoto, K, Uchiyama, S, Noda, M, McKay, A.R, Fukui, K, Hauri, H.P, Kato, K.
Deposit date:2009-07-17
Release date:2010-01-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency.
Proc.Natl.Acad.Sci.USA, 107, 2010
2YZL
DownloadVisualize
BU of 2yzl by Molmil
Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Phosphoribosylaminoimidazole-succinocarboxamide synthase, SULFATE ION
Authors:Kanagawa, M, Baba, S, Fukui, K, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-06
Release date:2007-11-06
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii
To be Published
6KBP
DownloadVisualize
BU of 6kbp by Molmil
Crystal structure of human D-amino acid oxidase mutant (P219L) complexed with benzoate
Descriptor: ACETATE ION, BENZOIC ACID, D-amino-acid oxidase, ...
Authors:Rachadech, W, Kato, Y, Maita, N, Fukui, K.
Deposit date:2019-06-26
Release date:2020-07-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of human D-amino acid oxidase mutant (P219L) complexed with benzoate
To Be Published
3WJ4
DownloadVisualize
BU of 3wj4 by Molmil
Crystal structure of PPARgamma ligand binding domain in complex with tributyltin
Descriptor: Peroxisome proliferator-activated receptor gamma, tributylstannanyl
Authors:Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
3WJ5
DownloadVisualize
BU of 3wj5 by Molmil
Crystal structure of PPARgamma ligand binding domain in complex with triphenyltin
Descriptor: Peroxisome proliferator-activated receptor gamma, triphenylstannanyl
Authors:Harada, S, Hiromori, Y, Fukakusa, S, Kawahara, K, Nakamura, S, Noda, M, Uchiyama, S, Fukui, K, Nishikawa, J, Nagase, H, Kobayashi, Y, Ohkubo, T, Yoshida, T, Nakanishi, T.
Deposit date:2013-10-04
Release date:2014-10-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds
To be Published
5XE9
DownloadVisualize
BU of 5xe9 by Molmil
Crystal Structure of the Complex of the Peptidase Domain of Streptococcus mutans ComA with a Small Molecule Inhibitor.
Descriptor: Putative ABC transporter, ATP-binding protein ComA, [(1~{S},2~{R},4~{S},5~{R})-5-[5-(4-methoxyphenyl)-2-methyl-pyrazol-3-yl]-1-azabicyclo[2.2.2]octan-2-yl]methyl ~{N}-propylcarbamate
Authors:Ishii, S, Fukui, K, Yokoshima, S, Kumagai, K, Beniyama, Y, Kodama, T, Fukuyama, T, Okabe, T, Nagano, T, Kojima, H, Yano, T.
Deposit date:2017-04-03
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway
Sci Rep, 7, 2017
5XE8
DownloadVisualize
BU of 5xe8 by Molmil
Crystal Structure of the Peptidase Domain of Streptococcus mutans ComA
Descriptor: DI(HYDROXYETHYL)ETHER, Putative ABC transporter, ATP-binding protein ComA
Authors:Ishii, S, Fukui, K, Yokoshima, S, Kumagai, K, Beniyama, Y, Kodama, T, Fukuyama, T, Okabe, T, Nagano, T, Kojima, H, Yano, T.
Deposit date:2017-04-03
Release date:2017-06-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway
Sci Rep, 7, 2017
5YTQ
DownloadVisualize
BU of 5ytq by Molmil
Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8
Descriptor: LANTHANUM (III) ION, TTHA0139
Authors:Takao, K, Inoue, M, Fukui, K, Yano, T, Masui, R.
Deposit date:2017-11-19
Release date:2018-11-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Crystal Structure of TTHA0139 L34A with Lanthanum from Thermus thermophilus HB8
To Be Published
7ED9
DownloadVisualize
BU of 7ed9 by Molmil
Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
Authors:Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
Deposit date:2021-03-15
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.01764154 Å)
Cite:Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
7ED6
DownloadVisualize
BU of 7ed6 by Molmil
Crystal structure of Thermus thermophilus FakA ATP-binding domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
Authors:Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
Deposit date:2021-03-15
Release date:2022-03-16
Last modified:2023-01-11
Method:X-RAY DIFFRACTION (1.92850327 Å)
Cite:Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022

 

12>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon