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4U4T
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STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN NITRATE-BOUND INWARD-OPEN STATE
Descriptor:Nitrate/nitrite transporter NarK, NITRATE ION, ZINC ION, ...
Authors:Fukuda, M., Takeda, H., Kato, H.E., Doki, S., Ito, K., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
4U4V
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STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN APO INWARD-OPEN STATE
Descriptor:Nitrate/nitrite transporter NarK, OLEIC ACID, NICKEL (II) ION
Authors:Fukuda, M., Takeda, H., Kato, H.E., Doki, S., Ito, K., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
4U4W
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STRUCTURE OF A NITRATE/NITRITE ANTIPORTER NARK IN NITRATE-BOUND OCCLUDED STATE
Descriptor:Nitrate/nitrite transporter NarK, NITRATE ION, OLEIC ACID, ...
Authors:Fukuda, M., Takeda, H., Kato, H.E., Doki, S., Ito, K., Maturana, A.D., Ishitani, R., Nureki, O.
Deposit date:2014-07-24
Release date:2015-07-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK
Nat Commun, 6, 2015
1F3P
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FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsuidagger, Y.
Deposit date:2000-06-06
Release date:2001-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1ULI
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BIPHENYL DIOXYGENASE (BPHA1A2) DERIVED FROM RHODOCOCCUS SP. STRAIN RHA1
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1ULJ
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BIPHENYL DIOXYGENASE (BPHA1A2) IN COMPLEX WITH THE SUBSTRATE
Descriptor:biphenyl dioxygenase large subunit, biphenyl dioxygenase small subunit, FE (II) ION, ...
Authors:Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.
Deposit date:2003-09-12
Release date:2004-09-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
J.Mol.Biol., 342, 2004
1D7Y
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CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
Descriptor:FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M., Mitsui, Y.
Deposit date:1999-10-21
Release date:2000-12-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
2E4P
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CRYSTAL STRUCTURE OF BPHA3 (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin subunit, SULFATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
Deposit date:2006-12-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2E4Q
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CRYSTAL STRUCTURE OF BPHA3 (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER
Authors:Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
Deposit date:2006-12-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2ZET
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CRYSTAL STRUCTURE OF THE SMALL GTPASE RAB27B COMPLEXED WITH THE SLP HOMOLOGY DOMAIN OF SLAC2-A/MELANOPHILIN
Descriptor:Ras-related protein Rab-27B, Melanophilin, MAGNESIUM ION, ...
Authors:Kukimoto-Niino, M., Sakamoto, A., Kanno, E., Hanawa-Suetsugu, K., Terada, T., Shirouzu, M., Fukuda, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-12-17
Release date:2008-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for the exclusive specificity of Slac2-a/melanophilin for the Rab27 GTPases.
Structure, 16, 2008
3A76
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THE CRYSTAL STRUCTURE OF LINA
Descriptor:Gamma-hexachlorocyclohexane dehydrochlorinase, SPERMIDINE, GLYCEROL
Authors:Okai, M., Kubota, K., Fukuda, M., Nagata, Y., Nagata, K., Tanokura, M.
Deposit date:2009-09-15
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of g-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26
J.Mol.Biol., 2010
3WKU
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2013-10-31
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WPM
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX BY CO-CRYSTALLIZATION
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-01-14
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR3
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-13
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR4
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-13
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR8
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CRYSTAL STRUCTURE OF DESB FROM SPHINGOBIUM SP. STRAIN SYK-6
Descriptor:Gallate dioxygenase, FE (II) ION
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR9
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRA
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CRYSTAL STRUCTURE OF THE DESB-GALLATE COMPLEX EXPOSED TO AEROBIC ATOMOSPHERE
Descriptor:Gallate dioxygenase, FE (II) ION
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRB
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CRYSTAL STRUCTURE OF THE ANAEROBIC H124F DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WRC
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-PROTOCATECHUATE (PCA) COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4-DIHYDROXYBENZOIC ACID
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-21
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
1BOU
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THREE-DIMENSIONAL STRUCTURE OF LIGAB
Descriptor:4,5-DIOXYGENASE ALPHA CHAIN, 4,5-DIOXYGENASE BETA CHAIN, FE (III) ION
Authors:Sugimoto, K., Senda, T., Fukuda, M., Mitsui, Y.
Deposit date:1998-08-06
Release date:1999-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions.
Structure, 7, 1999
1KW3
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYAL DIOXYGENASE (BPHC) AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW6
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW8
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CRYSTAL STRUCTURE OF BPHC-2,3-DIHYDROXYBIPHENYL-NO COMPLEX
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, NITRIC OXIDE, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 2.0A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
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