Author results

2MSU
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NMR STRUCTURE OF KINDLIN-2 F2 339-358
Descriptor:Fermitin family homolog 2
Authors:Fukuda, K., Bledzka, K., Yang, J., Perera, H.D.
Deposit date:2014-08-05
Release date:2014-08-27
Last modified:2014-10-29
Method:SOLUTION NMR
Cite:Molecular Basis of Kindlin-2 Binding to Integrin-linked Kinase Pseudokinase for Regulating Cell Adhesion.
J.Biol.Chem., 289, 2014
3KMU
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CRYSTAL STRUCTURE OF THE ILK/ALPHA-PARVIN CORE COMPLEX (APO)
Descriptor:Integrin-linked kinase, Alpha-parvin
Authors:Fukuda, K., Qin, J.
Deposit date:2009-11-11
Release date:2009-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The pseudoactive site of ILK is essential for its binding to alpha-Parvin and localization to focal adhesions.
Mol.Cell, 36, 2009
3KMW
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CRYSTAL STRUCTURE OF THE ILK/ALPHA-PARVIN CORE COMPLEX (MGATP)
Descriptor:Integrin-linked kinase, Alpha-parvin, MAGNESIUM ION, ...
Authors:Fukuda, K., Qin, J.
Deposit date:2009-11-11
Release date:2009-12-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:The pseudoactive site of ILK is essential for its binding to alpha-Parvin and localization to focal adhesions.
Mol.Cell, 36, 2009
1C3A
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CRYSTAL STRUCTURE OF FLAVOCETIN-A FROM THE HABU SNAKE VENOM, A NOVEL CYCLIC TETRAMER OF C-TYPE LECTIN-LIKE HETERODIMERS
Descriptor:FLAVOCETIN-A: ALPHA SUBUNIT, FLAVOCETIN-A: BETA SUBUNIT
Authors:Fukuda, K., Mizuno, H., Atoda, H., Morita, T.
Deposit date:1999-07-27
Release date:2000-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of flavocetin-A, a platelet glycoprotein Ib-binding protein, reveals a novel cyclic tetramer of C-type lectin-like heterodimers.
Biochemistry, 39, 2000
1IJB
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THE VON WILLEBRAND FACTOR MUTANT (I546V) A1 DOMAIN
Descriptor:von Willebrand factor
Authors:Fukuda, K., Doggett, T.A., Bankston, L.A., Cruz, M.A., Diacovo, T.G., Liddington, R.C.
Deposit date:2001-04-25
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of von Willebrand factor activation by the snake toxin botrocetin.
Structure, 10, 2002
1IJK
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THE VON WILLEBRAND FACTOR MUTANT (I546V) A1 DOMAIN-BOTROCETIN COMPLEX
Descriptor:von Willebrand factor, Botrocetin
Authors:Fukuda, K., Doggett, T.A., Bankston, L.A., Cruz, M.A., Diacovo, T.G., Liddington, R.C.
Deposit date:2001-04-26
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of von Willebrand factor activation by the snake toxin botrocetin.
Structure, 10, 2002
1U0N
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THE TERNARY VON WILLEBRAND FACTOR A1-GLYCOPROTEIN IBALPHA-BOTROCETIN COMPLEX
Descriptor:Von Willebrand factor, Botrocetin, Platelet glycoprotein Ib
Authors:Fukuda, K., Liddington, R.C.
Deposit date:2004-07-13
Release date:2005-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The snake venom protein botrocetin acts as a biological brace to promote dysfunctional platelet aggregation
Nat.Struct.Mol.Biol., 12, 2005
1U0O
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THE MOUSE VON WILLEBRAND FACTOR A1-BOTROCETIN COMPLEX
Descriptor:Botrocetin, von Willebrand factor
Authors:Fukuda, K., Liddington, R.C.
Deposit date:2004-07-14
Release date:2005-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The snake venom protein botrocetin acts as a biological brace to promote dysfunctional platelet aggregation
Nat.Struct.Mol.Biol., 12, 2005
3REP
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CRYSTAL STRUCTURE OF THE ILK/ALPHA-PARVIN CORE COMPLEX (MNATP)
Descriptor:Integrin-linked kinase, Alpha-parvin, MANGANESE (II) ION, ...
Authors:Fukuda, K., Qin, J.
Deposit date:2011-04-04
Release date:2011-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the ILK/alpha-parvin core complex (MnATP)
To be Published
6MIB
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CRYSTAL STRUCTURE OF THE ILK ATP-BINDING DEFICIENT MUTANT (L207W)/ALPHA-PARVIN CORE COMPLEX
Descriptor:Integrin-linked protein kinase, Alpha-parvin
Authors:Fukuda, K., Qin, J.
Deposit date:2018-09-19
Release date:2018-11-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Non-catalytic signaling by pseudokinase ILK for regulating cell adhesion.
Nat Commun, 9, 2018
1UL1
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CRYSTAL STRUCTURE OF THE HUMAN FEN1-PCNA COMPLEX
Descriptor:Flap endonuclease-1, Proliferating cell nuclear antigen, MAGNESIUM ION
Authors:Sakurai, S., Kitano, K., Yamaguchi, H., Hamada, K., Okada, K., Fukuda, K., Uchida, M., Ohtsuka, E., Morioka, H., Hakoshima, T.
Deposit date:2003-09-05
Release date:2005-03-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for recruitment of human flap endonuclease 1 to PCNA
EMBO J., 24, 2005
1JWI
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CRYSTAL STRUCTURE OF BITISCETIN, A VON WILLEBAND FACTOR-DEPENDENT PLATELET AGGREGATION INDUCER.
Descriptor:bitiscetin, platelet aggregation inducer
Authors:Hirotsu, S., Mizuno, H., Fukuda, K., Qi, M.C., Matsui, T., Hamako, J., Morita, T., Titani, K.
Deposit date:2001-09-04
Release date:2001-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer.
Biochemistry, 40, 2001
2K2R
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THE NMR STRUCTURE OF ALPHA-PARVIN CH2/PAXILLIN LD1 COMPLEX
Descriptor:Alpha-parvin, Paxillin
Authors:Wang, X., Fukuda, K., Byeon, I., Velyvis, A., Wu, C., Gronenborn, A., Qin, J.
Deposit date:2008-04-10
Release date:2008-05-27
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The Structure of {alpha}-Parvin CH2-Paxillin LD1 Complex Reveals a Novel Modular Recognition for Focal Adhesion Assembly.
J.Biol.Chem., 283, 2008
2LKO
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STRUCTURAL BASIS OF PHOSPHOINOSITIDE BINDING TO KINDLIN-2 PLECKSTRIN HOMOLOGY DOMAIN IN REGULATING INTEGRIN ACTIVATION
Descriptor:Fermitin family homolog 2, INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
Authors:Liu, J., Fukuda, K., Xu, Z.
Deposit date:2011-10-17
Release date:2011-10-26
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structural basis of phosphoinositide binding to kindlin-2 protein pleckstrin homology domain in regulating integrin activation.
J.Biol.Chem., 286, 2011
2MWN
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TALIN-F3 / RIAM N-TERMINAL PEPTIDE COMPLEX
Descriptor:Amyloid beta A4 precursor protein-binding family B member 1-interacting protein, Talin-1
Authors:Yang, J., Zhu, L., Zhang, H., Hirbawi, J., Fukuda, K., Dwivedi, P., Liu, J., Byzova, T., Plow, E.F., Wu, J., Qin, J.
Deposit date:2014-11-13
Release date:2014-12-17
Last modified:2015-01-14
Method:SOLUTION NMR
Cite:Conformational activation of talin by RIAM triggers integrin-mediated cell adhesion.
Nat Commun, 5, 2014
2OTN
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CRYSTAL STRUCTURE OF THE CATALYTICALLY ACTIVE FORM OF DIAMINOPIMELATE EPIMERASE FROM BACILLUS ANTHRACIS
Descriptor:Diaminopimelate epimerase
Authors:Matho, M.H., Fukuda, K., Santelli, E., Jaroszewski, L., Liddington, R.C., Roper, D.
Deposit date:2007-02-08
Release date:2008-03-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure and inhibition of a catalytically active form of diaminopimelate epimerase (DapF)from Bacillus anthracis
To be Published
3A64
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CRYSTAL STRUCTURE OF CCCEL6C, A GLYCOSIDE HYDROLASE FAMILY 6 ENZYME, FROM COPRINOPSIS CINEREA
Descriptor:Cellobiohydrolase, MAGNESIUM ION
Authors:Liu, Y., Yoshida, M., Kurakata, Y., Miyazaki, T., Nishikawa, A., Tonozuka, T.
Deposit date:2009-08-21
Release date:2009-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a glycoside hydrolase family 6 enzyme, CcCel6C, a cellulase constitutively produced by Coprinopsis cinerea
Febs J., 277, 2010
3A9B
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CCCEL6C, A GLYCOSIDE HYDROLASE FAMILY 6 ENZYME, COMPLEXED WITH CELLOBIOSE
Descriptor:Cellobiohydrolase, MAGNESIUM ION, BETA-D-GLUCOSE, ...
Authors:Liu, Y., Yoshida, M., Kurakata, Y., Miyazaki, T., Nishikawa, A., Tonozuka, T.
Deposit date:2009-10-22
Release date:2009-11-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of a glycoside hydrolase family 6 enzyme, CcCel6C, a cellulase constitutively produced by Coprinopsis cinerea
Febs J., 277, 2010
3ABX
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CCCEL6C, A GLYCOSIDE HYDROLASE FAMILY 6 ENZYME, COMPLEXED WITH P-NITROPHENYL BETA-D-CELLOTRIOSIDE
Descriptor:Cellobiohydrolase, MAGNESIUM ION, 4-nitrophenyl beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranoside
Authors:Liu, Y., Yoshida, M., Kurakata, Y., Miyazaki, T., Nishikawa, A., Tonozuka, T.
Deposit date:2009-12-24
Release date:2010-01-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of a glycoside hydrolase family 6 enzyme, CcCel6C, a cellulase constitutively produced by Coprinopsis cinerea
Febs J., 277, 2010
6IQM
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CRYSTAL STRUCTURE OF CELL SURFACE GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH NAD+ FROM LACTOBACILLUS PLANTARUM
Descriptor:Glyceraldehyde-3-phosphate dehydrogenase, type I, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Yoneda, K., Kinoshita, H.
Deposit date:2018-11-08
Release date:2018-11-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase from Lactobacillus plantarum: Insight into the Mercury Binding Mechanism
To be published
6IQV
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CRYSTAL STRUCTURE OF CELL SURFACE GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH HG2+ FROM LACTOBACILLUS PLANTARUM
Descriptor:Glyceraldehyde-3-phosphate dehydrogenase, type I, 1,2-ETHANEDIOL, ...
Authors:Yoneda, K., Kinoshita, H.
Deposit date:2018-11-09
Release date:2018-11-21
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase from Lactobacillus plantarum: Insight into the Mercury Binding Mechanism
To be published
1QM8
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STRUCTURE OF BACTERIORHODOPSIN AT 100 K
Descriptor:BACTERIORHODOPSIN, RETINAL, 3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL, ...
Authors:Takeda, K., Matsui, Y., Sato, H., Hino, T., Kanamori, E., Okumura, H., Yamane, T., Kamiya, N., Kouyama, T.
Deposit date:1999-09-22
Release date:2000-08-16
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Novel Three-Dimensional Crystal of Bacteriorhodopsin Obtained by Successive Fusion of the Vesicular Assemblies.
J.Mol.Biol., 283, 1998
1BM1
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CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
Descriptor:BACTERIORHODOPSIN, RETINAL, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER
Authors:Sato, H., Takeda, K., Tani, K., Hino, T., Okada, T., Nakasako, M., Kamiya, N., Kouyama, T.
Deposit date:1998-07-28
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
1KLO
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CRYSTAL STRUCTURE OF THREE CONSECUTIVE LAMININ-TYPE EPIDERMAL GROWTH FACTOR-LIKE (LE) MODULES OF LAMININ GAMMA1 CHAIN HARBORING THE NIDOGEN BINDING SITE
Descriptor:LAMININ
Authors:Stetefeld, J., Mayer, U., Timpl, R., Huber, R.
Deposit date:1996-02-02
Release date:1997-08-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of three consecutive laminin-type epidermal growth factor-like (LE) modules of laminin gamma1 chain harboring the nidogen binding site.
J.Mol.Biol., 257, 1996
1TLE
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LE (LAMININ-TYPE EGF-LIKE) MODULE GIII4 IN SOLUTION AT PH 3.5 AND 290 K, NMR, 14 STRUCTURES
Descriptor:LAMININ
Authors:Baumgartner, R., Czisch, M., Mayer, U., Schl, E.P., Huber, R., Timpl, R., Holak, T.A.
Deposit date:1996-01-26
Release date:1997-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the nidogen binding LE module of the laminin gamma1 chain in solution.
J.Mol.Biol., 257, 1996