Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2E5A
DownloadVisualize
BU of 2e5a by Molmil
Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-AMP
Descriptor: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, ACETIC ACID, Lipoyltransferase 1, ...
Authors:Fujiwara, K, Hosaka, H, Matsuda, M, Suzuki, M, Nakagawa, A.
Deposit date:2006-12-19
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of bovine Lipoyltransferase in complex with lipoyl-AMP
J.Mol.Biol., 371, 2007
3A7A
DownloadVisualize
BU of 3a7a by Molmil
Crystal structure of E. coli lipoate-protein ligase A in complex with octyl-amp and apoH-protein
Descriptor: ADENOSINE MONOPHOSPHATE, Glycine cleavage system H protein, Lipoate-protein ligase A, ...
Authors:Fujiwara, K, Hosaka, H, Nakagawa, A.
Deposit date:2009-09-20
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A7U
DownloadVisualize
BU of 3a7u by Molmil
Crystal structure of the bovine lipoyltransferase in its unliganded form
Descriptor: Lipoyltransferase 1, mitochondrial
Authors:Fujiwara, K, Hosaka, H, Nakagawa, A.
Deposit date:2009-10-05
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.44 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A7L
DownloadVisualize
BU of 3a7l by Molmil
Crystal structure of E. coli apoH-protein
Descriptor: Glycine cleavage system H protein
Authors:Fujiwara, K, Maita, N.
Deposit date:2009-09-28
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
3A7R
DownloadVisualize
BU of 3a7r by Molmil
Crystal structure of E. coli lipoate-protein ligase A in complex with lipoyl-AMP.
Descriptor: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, Lipoate-protein ligase A, MAGNESIUM ION, ...
Authors:Fujiwara, K, Hosaka, H.
Deposit date:2009-10-01
Release date:2010-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J.Biol.Chem., 285, 2010
1UEL
DownloadVisualize
BU of 1uel by Molmil
Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a
Descriptor: 26S proteasome non-ATPase regulatory subunit 4, UV excision repair protein RAD23 homolog B
Authors:Fujiwara, K, Tenno, T, Jee, J.G, Sugasawa, K, Ohki, I, Kojima, C, Tochio, H, Hiroaki, H, Hanaoka, H, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-19
Release date:2004-02-10
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
1X2H
DownloadVisualize
BU of 1x2h by Molmil
Crystal Structure of Lipate-Protein Ligase A from Escherichia coli complexed with lipoic acid
Descriptor: LIPOIC ACID, Lipoate-protein ligase A
Authors:Fujiwara, K, Toma, S, Okamura-Ikeda, K, Motokawa, Y, Nakagawa, A, Taniguchi, H.
Deposit date:2005-04-23
Release date:2005-08-02
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure of lipoate-protein ligase A from Escherichia coli: Determination of the lipoic acid-binding site
J.Biol.Chem., 280, 2005
1X2G
DownloadVisualize
BU of 1x2g by Molmil
Crystal Structure of Lipate-Protein Ligase A from Escherichia coli
Descriptor: Lipoate-protein ligase A
Authors:Fujiwara, K, Toma, S, Okamura-Ikeda, K, Motokawa, Y, Nakagawa, A, Taniguchi, H.
Deposit date:2005-04-23
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of lipoate-protein ligase A from Escherichia coli: Determination of the lipoic acid-binding site
J.Biol.Chem., 280, 2005
3KLR
DownloadVisualize
BU of 3klr by Molmil
Bovine H-protein at 0.88 angstrom resolution
Descriptor: GLYCEROL, Glycine cleavage system H protein, SULFATE ION
Authors:Higashiura, A, Kurakane, T, Matsuda, M, Suzuki, M, Inaka, K, Sato, M, Tanaka, H, Fujiwara, K, Nakagawa, A.
Deposit date:2009-11-09
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution
Acta Crystallogr.,Sect.D, 66, 2010
2RRE
DownloadVisualize
BU of 2rre by Molmil
Structure and function of the N-terminal nucleolin binding domain of nuclear valocine containing protein like 2 (NVL2) harboring a nucleolar localization signal
Descriptor: Putative uncharacterized protein
Authors:Fujiwara, Y, Fujiwara, K, Goda, N, Iwaya, N, Tenno, T, Shirakawa, M, Hiroaki, H.
Deposit date:2010-08-03
Release date:2011-04-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal
J.Biol.Chem., 286, 2011
1WSV
DownloadVisualize
BU of 1wsv by Molmil
Crystal Structure of Human T-protein of Glycine Cleavage System
Descriptor: Aminomethyltransferase, N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID, SULFATE ION
Authors:Okamura-Ikeda, K, Hosaka, H, Yoshimura, M, Yamashita, E, Toma, S, Nakagawa, A, Fujiwara, K, Motokawa, Y, Taniguchi, H.
Deposit date:2004-11-11
Release date:2005-08-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
1WSR
DownloadVisualize
BU of 1wsr by Molmil
Crystal Structure of Human T-protein of Glycine Cleavage System
Descriptor: Aminomethyltransferase, SULFATE ION
Authors:Okamura-Ikeda, K, Hosaka, H, Yoshimura, M, Yamashita, E, Toma, S, Nakagawa, A, Fujiwara, K, Motokawa, Y, Taniguchi, H.
Deposit date:2004-11-10
Release date:2005-08-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia
J.Mol.Biol., 351, 2005
2RRC
DownloadVisualize
BU of 2rrc by Molmil
Solution Structure of RNA aptamer against AML1 Runt domain
Descriptor: 5'-R(P*GP*GP*AP*CP*CP*CP*(AP7)P*CP*CP*AP*CP*GP*GP*CP*GP*AP*GP*GP*UP*CP*CP*A)-3'
Authors:Nomura, Y, Fujiwara, K, Chiba, M, Fukunaga, J, Tanaka, Y, Iibuchi, H, Tanaka, T, Nakamura, Y, Kawai, G, Kozu, T, Sakamoto, T.
Deposit date:2010-06-23
Release date:2011-06-29
Last modified:2020-02-26
Method:SOLUTION NMR
Cite:A novel high affinity RNA motif that mimics DNA in AML1 Runt domain binding
To be Published
1WR1
DownloadVisualize
BU of 1wr1 by Molmil
The complex structure of Dsk2p UBA with ubiquitin
Descriptor: Ubiquitin, Ubiquitin-like protein DSK2
Authors:Ohno, A, Jee, J.G, Fujiwara, K, Tenno, T, Goda, N, Tochio, H, Hiroaki, H, kobayashi, H, Shirakawa, M.
Deposit date:2004-10-08
Release date:2005-04-19
Last modified:2023-09-27
Method:SOLUTION NMR
Cite:Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1WR0
DownloadVisualize
BU of 1wr0 by Molmil
Structural characterization of the MIT domain from human Vps4b
Descriptor: SKD1 protein
Authors:Takasu, H, Jee, J.G, Ohno, A, Goda, N, Fujiwara, K, Tochio, H, Shirakawa, M, Hiroaki, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-07
Release date:2005-08-02
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Structural characterization of the MIT domain from human Vps4b
Biochem.Biophys.Res.Commun., 334, 2005
3WB5
DownloadVisualize
BU of 3wb5 by Molmil
Crystal Structure of beta secetase in complex with (6S)-2-amino-3,6-dimethyl-6-[(1R,2R)-2-phenylcyclopropyl]-3,4,5,6-tetrahydropyrimidin-4-one
Descriptor: (6S)-2-amino-3,6-dimethyl-6-[(1R,2R)-2-phenylcyclopropyl]-5,6-dihydropyrimidin-4(3H)-one, Beta-secretase 1, DIMETHYL SULFOXIDE, ...
Authors:Yonezawa, S, Fujiwara, K, Yamamoto, T, Hattori, K, Yamakawa, H, Muto, C, Hosono, M, Tanaka, Y, Nakano, T, Takemoto, H, Arisawa, M, Shuto, S.
Deposit date:2013-05-13
Release date:2013-10-02
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Conformational restriction approach to beta-secretase (BACE1) inhibitors III: Effective investigation of the binding mode by combinational use of X-ray analysis, isothermal titration calorimetry and theoretical calculations
Bioorg.Med.Chem., 21, 2013
3WB4
DownloadVisualize
BU of 3wb4 by Molmil
Crystal Structure of beta secetase in complex with 2-amino-3,6-dimethyl-6-(2-phenylethyl)-3,4,5,6-tetrahydropyrimidin-4-one
Descriptor: (6R)-2-amino-3,6-dimethyl-6-(2-phenylethyl)-5,6-dihydropyrimidin-4(3H)-one, Beta-secretase 1, GLYCEROL, ...
Authors:Yonezawa, S, Fujiwara, K, Yamamoto, T, Hattori, K, Yamakawa, H, Muto, C, Hosono, M, Tanaka, Y, Nakano, T, Takemoto, H, Arisawa, M, Shuto, S.
Deposit date:2013-05-13
Release date:2013-10-02
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Conformational restriction approach to beta-secretase (BACE1) inhibitors III: Effective investigation of the binding mode by combinational use of X-ray analysis, isothermal titration calorimetry and theoretical calculations
Bioorg.Med.Chem., 21, 2013
6SZS
DownloadVisualize
BU of 6szs by Molmil
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Muller, C, Beckert, B, Wilson, D.N.
Deposit date:2019-10-02
Release date:2019-12-04
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis.
Nat Commun, 10, 2019
3A8I
DownloadVisualize
BU of 3a8i by Molmil
Crystal Structure of ET-EHred-5-CH3-THF complex
Descriptor: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, Aminomethyltransferase, Glycine cleavage system H protein, ...
Authors:Okamura-Ikeda, K, Hosaka, H.
Deposit date:2009-10-06
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010
5ZC9
DownloadVisualize
BU of 5zc9 by Molmil
Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex
Descriptor: (1R,2R,3S,3aR,8bS)-6,8-dimethoxy-3a-(4-methoxyphenyl)-N,N-dimethyl-1,8b-bis(oxidanyl)-3-phenyl-2,3-dihydro-1H-cyclopenta[b][1]benzofuran-2-carboxamide, Eukaryotic initiation factor 4A-I, MAGNESIUM ION, ...
Authors:Iwasaki, W, Takahashi, M, Sakamoto, A, Iwasaki, S, Ito, T.
Deposit date:2018-02-16
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA.
Mol. Cell, 73, 2019
8QCQ
DownloadVisualize
BU of 8qcq by Molmil
B. subtilis ApdA-stalled ribosomal complex
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Morici, M, Wilson, D.N.
Deposit date:2023-08-28
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Novel arrest peptides induce ribosome stalling by short circuiting the ribosomal peptidyltransferase activity
To Be Published, 2024
8QBT
DownloadVisualize
BU of 8qbt by Molmil
E. coli ApdP-stalled ribosomal complex
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S11, ...
Authors:Morici, M, Wilson, D.N.
Deposit date:2023-08-25
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Novel arrest peptides induce ribosome stalling by short circuiting the ribosomal peptidyltransferase activity
To Be Published, 2024
8QOA
DownloadVisualize
BU of 8qoa by Molmil
Structure of SecM-stalled Escherichia coli 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ...
Authors:Gersteuer, F, Morici, M, Wilson, D.N.
Deposit date:2023-09-28
Release date:2024-03-20
Method:ELECTRON MICROSCOPY (2 Å)
Cite:SecM adopts alpha-helical conformation in the ribosomal exit tunnel and traps a pre-peptide bond formation state of the ribosome
To Be Published, 2024
3AB9
DownloadVisualize
BU of 3ab9 by Molmil
Crystal Structure of lipoylated E. coli H-protein (reduced form)
Descriptor: CALCIUM ION, CHLORIDE ION, Glycine cleavage system H protein
Authors:Okamura-Ikeda, K, Maita, N.
Deposit date:2009-12-04
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010
3A8J
DownloadVisualize
BU of 3a8j by Molmil
Crystal Structure of ET-EHred complex
Descriptor: Aminomethyltransferase, Glycine cleavage system H protein
Authors:Okamura-Ikeda, K, Hosaka, H.
Deposit date:2009-10-06
Release date:2010-04-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystal structure of aminomethyltransferase in complex with dihydrolipoyl-H-protein of the glycine cleavage system: implications for recognition of lipoyl protein substrate, disease-related mutations, and reaction mechanism
J.Biol.Chem., 285, 2010

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon