Author results

1GD2
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CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
Descriptor:DNA (5'-D(*AP*GP*GP*TP*TP*AP*CP*GP*TP*AP*AP*CP*C)-3'), TRANSCRIPTION FACTOR PAP1
Authors:Fujii, Y., Shimizu, T., Toda, T., Yanagida, M., Hakoshima, T.
Deposit date:2000-08-25
Release date:2000-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the diversity of DNA recognition by bZIP transcription factors.
Nat.Struct.Biol., 7, 2000
1J2L
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CRYSTAL STRUCTURE OF THE DISINTEGRIN, TRIMESTATIN
Descriptor:Disintegrin triflavin, SULFATE ION
Authors:Fujii, Y., Okuda, D., Fujimoto, Z., Morita, T., Mizuno, H.
Deposit date:2003-01-06
Release date:2003-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of Trimestatin, a Disintegrin Containing a Cell Adhesion Recognition Motif RGD
J.Mol.Biol., 332, 2003
4YNY
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CRYSTAL STRUCTURE OF MONOCLONAL ANTI-HUMAN PODOPLANIN ANTIBODY NZ-1
Descriptor:Heavy chain of antigen binding fragment, Fab, Light chain of antigen binding fragment
Authors:Fujii, Y., Kitago, Y., Arimori, T., Takagi, J.
Deposit date:2015-03-11
Release date:2016-03-02
Last modified:2016-04-13
Method:X-RAY DIFFRACTION (1.584 Å)
Cite:Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state
J.Cell.Sci., 129, 2016
4YO0
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CRYSTAL STRUCTURE OF MONOCLONAL ANTI-HUMAN PODOPLANIN ANTIBODY NZ-1 WITH BOUND PA PEPTIDE
Descriptor:Heavy chain of antigen binding fragment, Fab, Light chain of antigen binding fragment, ...
Authors:Fujii, Y., Kitago, Y., Arimori, T., Takagi, J.
Deposit date:2015-03-11
Release date:2016-03-02
Last modified:2016-04-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state
J.Cell.Sci., 129, 2016
2IRF
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CRYSTAL STRUCTURE OF AN IRF-2/DNA COMPLEX.
Descriptor:DNA (5'-D(P*AP*AP*GP*TP*GP*AP*AP*AP*GP*(5IU)P*GP*A)-3'), DNA (5'-D(*TP*TP*CP*AP*CP*TP*TP*TP*CP*AP*CP*(5IU)P*T)-3'), INTERFERON REGULATORY FACTOR 2, ...
Authors:Fujii, Y., Shimizu, T., Kusumoto, M., Kyogoku, Y., Taniguchi, T., Hakoshima, T.
Deposit date:1999-05-30
Release date:1999-10-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of an IRF-DNA complex reveals novel DNA recognition and cooperative binding to a tandem repeat of core sequences.
EMBO J., 18, 1999
5B2I
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HUMAN NUCLEOSOME CONTAINING CPG UNMETHYLATED DNA
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Fujii, Y., Wakamori, M., Umehara, T., Yokoyama, S.
Deposit date:2016-01-16
Release date:2016-06-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of human nucleosome core particle containing enzymatically introduced CpG methylation
Febs Open Bio, 6, 2016
5B2J
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HUMAN NUCLEOSOME CONTAINING CPG METHYLATED DNA
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Fujii, Y., Wakamori, M., Umehara, T., Yokoyama, S.
Deposit date:2016-01-18
Release date:2016-06-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of human nucleosome core particle containing enzymatically introduced CpG methylation
Febs Open Bio, 6, 2016
3WHE
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A NEW CONSERVED NEUTRALIZING EPITOPE AT THE GLOBULAR HEAD OF HEMAGGLUTININ IN H3N2 INFLUENZA VIRUSES
Descriptor:Hemagglutinin, immunoglobulin heavy chain, immunoglobulin light chain, ...
Authors:Fujii, Y., Sumida, T., Shirouzu, M., Yokoyama, S.
Deposit date:2013-08-25
Release date:2014-04-23
Method:X-RAY DIFFRACTION (4 Å)
Cite:Conserved Neutralizing Epitope at Globular Head of Hemagglutinin in H3N2 Influenza Viruses.
J.Virol., 2014
2Z36
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CRYSTAL STRUCTURE OF CYTOCHROME P450 MOXA FROM NONOMURAEA RECTICATENA (CYP105)
Descriptor:Cytochrome P450 type compactin 3'',4''-hydroxylase, FE (III) ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Yasutake, Y., Fujii, Y., Fujii, T., Arisawa, A., Tamura, T.
Deposit date:2007-06-02
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Biochem.Biophys.Res.Commun., 361, 2007
3WXV
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CRYSTAL STRUCTURE OF THE HUMAN ADIPONECTIN RECEPTOR 1
Descriptor:Adiponectin receptor protein 1, V region heavy chain, V region light chain, ...
Authors:Tanabe, H., Fujii, Y., Nakamura, Y., Hosaka, T., Okada-Iwabu, M., Iwabu, M., Kimura-Someya, T., Shirouzu, M., Yamauchi, T., Kadowaki, T., Yokoyama, S.
Deposit date:2014-08-11
Release date:2015-04-15
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of the human adiponectin receptors
Nature, 520, 2015
3WXW
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CRYSTAL STRUCTURE OF THE HUMAN ADIPONECTIN RECEPTOR 2
Descriptor:Adiponectin receptor protein 2, V region heavy chain, V region light chain, ...
Authors:Tanabe, H., Fujii, Y., Nakamura, Y., Hosaka, T., Okada-Iwabu, M., Iwabu, M., Kimura-Someya, T., Shirouzu, M., Yamauchi, T., Kadowaki, T., Yokoyama, S.
Deposit date:2014-08-11
Release date:2015-04-15
Last modified:2015-04-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of the human adiponectin receptors
Nature, 520, 2015
3A4G
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STRUCTURE OF CYTOCHROME P450 VDH FROM PSEUDONOCARDIA AUTOTROPHICA (TRIGONAL CRYSTAL FORM)
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, 2-(2-METHOXYETHOXY)ETHANOL
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-07
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A4H
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STRUCTURE OF CYTOCHROME P450 VDH FROM PSEUDONOCARDIA AUTOTROPHICA (ORTHORHOMBIC CRYSTAL FORM)
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, CALCIUM ION
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-07
Release date:2010-07-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A4Z
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STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, CALCIUM ION, ...
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-24
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A50
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STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION WITH BOUND VITAMIN D3
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, (1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL, ...
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-24
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
3A51
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STRUCTURE OF CYTOCHROME P450 VDH MUTANT (VDH-K1) OBTAINED BY DIRECTED EVOLUTION WITH BOUND 25-HYDROXYVITAMIN D3
Descriptor:Vitamin D hydroxylase, PROTOPORPHYRIN IX CONTAINING FE, 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANOL, ...
Authors:Yasutake, Y., Fujii, Y., Cheon, W.K., Arisawa, A., Tamura, T.
Deposit date:2009-07-24
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase
J.Biol.Chem., 285, 2010
1WKR
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CRYSTAL STRUCTURE OF ASPARTIC PROTEINASE FROM IRPEX LACTEUS
Descriptor:Polyporopepsin, pepstatin, SULFATE ION
Authors:Fujimoto, Z., Fujii, Y., Kaneko, S., Kobayashi, H., Mizuno, H.
Deposit date:2004-06-02
Release date:2004-09-07
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal Structure of Aspartic Proteinase from Irpex lacteus in Complex with Inhibitor Pepstatin
J.Mol.Biol., 341, 2004
5AV5
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HUMAN NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
Deposit date:2015-06-11
Release date:2015-12-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Sci Rep, 5, 2015
5AV6
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HUMAN NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
Deposit date:2015-06-12
Release date:2015-12-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Sci Rep, 5, 2015
5AV8
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HUMAN NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
Deposit date:2015-06-12
Release date:2015-12-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Sci Rep, 5, 2015
5AV9
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HUMAN NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
Deposit date:2015-06-12
Release date:2015-12-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Sci Rep, 5, 2015
5AVB
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HUMAN NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
Deposit date:2015-06-12
Release date:2015-12-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Sci Rep, 5, 2015
5AVC
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HUMAN NUCLEOSOME CORE PARTICLE
Descriptor:Histone H3.1, Histone H4, Histone H2A type 1-B/E, ...
Authors:Wakamori, M., Fujii, Y., Umehara, T., Yokoyama, S.
Deposit date:2015-06-12
Release date:2015-12-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Sci Rep, 5, 2015
5GZT
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, SODIUM ION, PHOSPHATE ION, ...
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Last modified:2017-01-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
5GZU
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CRYSTAL STRUCTURE OF CHITINASE CHIW FROM PAENIBACILLUS SP. STR. FPU-7 REVEALS A NOVEL TYPE OF BACTERIAL CELL-SURFACE-EXPRESSED MULTI-MODULAR ENZYME MACHINERY
Descriptor:Chitinase, PHOSPHATE ION
Authors:Itoh, T., Hibi, T., Suzuki, F., Sugimoto, I., Fujiwara, A., Inaka, K., Tanaka, H., Ohta, K., Fujii, Y., Taketo, A., Kimoto, H.
Deposit date:2016-10-01
Release date:2016-12-28
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery
PLoS ONE, 11, 2016
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