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5WRH
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BU of 5wrh by Molmil
FlgG structure based on the CryoEM map of the bacterial flagellar polyrod
Descriptor: Flagellar basal-body rod protein FlgG
Authors:Fujii, T, Namba, K.
Deposit date:2016-12-02
Release date:2017-02-08
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Identical folds used for distinct mechanical functions of the bacterial flagellar rod and hook.
Nat Commun, 8, 2017
1C0N
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BU of 1c0n by Molmil
CSDB PROTEIN, NIFS HOMOLOGUE
Descriptor: ACETIC ACID, PROTEIN (CSDB PROTEIN), PYRIDOXAL-5'-PHOSPHATE
Authors:Fujii, T, Maeda, M, Mihara, H, Kurihara, T, Esaki, N, Hata, Y.
Deposit date:1999-07-17
Release date:2000-07-17
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase
Biochemistry, 39, 2000
3MFP
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BU of 3mfp by Molmil
Atomic model of F-actin based on a 6.6 angstrom resolution cryoEM map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle
Authors:Fujii, T, Iwane, A.H, Yanagida, T, Namba, K.
Deposit date:2010-04-03
Release date:2010-09-29
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Direct visualization of secondary structures of F-actin by electron cryomicroscopy
Nature, 467, 2010
5H53
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BU of 5h53 by Molmil
The structure of rabbit skeletal muscle actomyosin rigor complex at 5.2 angstrom.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Fujii, T, Namba, K.
Deposit date:2016-11-04
Release date:2017-01-18
Last modified:2017-01-25
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:Structure of actomyosin rigour complex at 5.2 angstrom resolution and insights into the ATPase cycle mechanism
Nat Commun, 8, 2017
3J0R
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BU of 3j0r by Molmil
Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map
Descriptor: Protein mxiH
Authors:Fujii, T, Cheung, M, Blanco, A, Kato, T, Blocker, A.J, Namba, K.
Deposit date:2011-11-03
Release date:2012-02-29
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structure of a type III secretion needle at 7-A resolution provides insights into its assembly and signaling mechanisms.
Proc.Natl.Acad.Sci.USA, 109, 2012
3A69
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BU of 3a69 by Molmil
Atomic model of the bacterial flagellar hook based on docking an X-ray derived structure and terminal two alpha-helices into an 7.1 angstrom resolution cryoEM map
Descriptor: Flagellar hook protein flgE
Authors:Fujii, T, Kato, T, Namba, K.
Deposit date:2009-08-26
Release date:2009-12-15
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (7.1 Å)
Cite:Specific arrangement of alpha-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function
Structure, 17, 2009
1XER
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BU of 1xer by Molmil
STRUCTURE OF FERREDOXIN
Descriptor: FE3-S4 CLUSTER, FERREDOXIN, ZINC ION
Authors:Fujii, T, Hata, Y, Moriyama, H, Wakagi, T, Tanaka, N, Oshima, T.
Deposit date:1996-08-28
Release date:1997-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Novel zinc-binding centre in thermoacidophilic archaeal ferredoxins.
Nat.Struct.Biol., 3, 1996
1J3U
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BU of 1j3u by Molmil
Crystal structure of aspartase from Bacillus sp. YM55-1
Descriptor: aspartase
Authors:Fujii, T, Sakai, H, Kawata, Y, Hata, Y.
Deposit date:2003-02-16
Release date:2003-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1: Structure-based Exploration of Functional Sites in the Aspartase Family
J.Mol.Biol., 328, 2003
3W5S
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BU of 3w5s by Molmil
Crystal Structure of Maleylacetate Reductase from Rhizobium sp. strain MTP-10005
Descriptor: BENZAMIDINE, GLYCEROL, Maleylacetate reductase, ...
Authors:Fujii, T, Ogawa, A, Goda, Y, Yamauchi, T, Yoshida, M, Oikawa, T, Hata, Y.
Deposit date:2013-02-06
Release date:2014-02-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal Structure of Maleylacetate Reductase from Rhizobium sp. strain MTP-10005
To be Published
1UHA
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BU of 1uha by Molmil
Crystal Structure of Pokeweed Lectin-D2
Descriptor: CALCIUM ION, lectin-D2
Authors:Fujii, T, Hayashida, M, Hamasu, M, Ishiguro, M, Hata, Y.
Deposit date:2003-06-27
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Acta Crystallogr.,Sect.D, 60, 2004
1ULN
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BU of 1uln by Molmil
Crystal Structure of Pokeweed Lectin-D1
Descriptor: lectin-D
Authors:Fujii, T, Hayashida, M, Hamasu, M, Ishiguro, M, Hata, Y.
Deposit date:2003-09-16
Release date:2004-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of two lectins from the roots of pokeweed (Phytolacca americana).
Acta Crystallogr.,Sect.D, 60, 2004
6KN7
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BU of 6kn7 by Molmil
Structure of human cardiac thin filament in the calcium free state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Fujii, T, Yamada, Y, Namba, K.
Deposit date:2019-08-03
Release date:2020-01-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
Nat Commun, 11, 2020
6KN8
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BU of 6kn8 by Molmil
Structure of human cardiac thin filament in the calcium bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Fujii, T, Yamada, Y, Namba, K.
Deposit date:2019-08-03
Release date:2020-01-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
Nat Commun, 11, 2020
1AKL
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BU of 1akl by Molmil
ALKALINE PROTEASE FROM PSEUDOMONAS AERUGINOSA IFO3080
Descriptor: ALKALINE PROTEASE, CALCIUM ION, ZINC ION
Authors:Miyatake, H, Hata, Y, Fujii, T, Hamada, K, Morihara, K, Katsube, Y.
Deposit date:1995-09-16
Release date:1996-03-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the unliganded alkaline protease from Pseudomonas aeruginosa IFO3080 and its conformational changes on ligand binding.
J.Biochem.(Tokyo), 118, 1995
2Z36
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BU of 2z36 by Molmil
Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cytochrome P450 type compactin 3'',4''-hydroxylase, FE (III) ION, ...
Authors:Yasutake, Y, Fujii, Y, Fujii, T, Arisawa, A, Tamura, T.
Deposit date:2007-06-02
Release date:2007-08-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of cytochrome P450 MoxA from Nonomuraea recticatena (CYP105)
Biochem.Biophys.Res.Commun., 361, 2007
1QH9
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BU of 1qh9 by Molmil
ENZYME-PRODUCT COMPLEX OF L-2-HALOACID DEHALOGENASE
Descriptor: 2-HALOACID DEHALOGENASE, LACTIC ACID
Authors:Li, Y.-F, Hata, Y, Fujii, T, Kurihara, T, Esaki, N.
Deposit date:1999-05-12
Release date:2000-05-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Structure of L-2-Haloacid Dehalogenase Complexed with a Reaction Product Reveals the Mechanism of Intermediate Hydrolysis in Dehalogenase
To be Published
1I29
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BU of 1i29 by Molmil
CRYSTAL STRUCTURE OF CSDB COMPLEXED WITH L-PROPARGYLGLYCINE
Descriptor: (2S)-2-aminobut-3-ynoic acid, CSDB, PYRIDOXAL-5'-PHOSPHATE
Authors:Mihara, H, Fujii, T, Kurihara, T, Hata, Y, Esaki, N.
Deposit date:2001-02-07
Release date:2003-07-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine.
J.BIOCHEM.(TOKYO), 131, 2002
3J6P
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BU of 3j6p by Molmil
Pseudo-atomic model of dynein microtubule binding domain-tubulin complex based on a cryoEM map
Descriptor: Dynein heavy chain, cytoplasmic, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Uchimura, S, Fujii, T, Takazaki, H, Ayukawa, R, Nishikawa, Y, Minoura, I, Hachikubo, Y, Kurisu, G, Sutoh, K, Kon, T, Namba, K, Muto, E.
Deposit date:2014-03-20
Release date:2014-12-31
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (8.2 Å)
Cite:A flipped ion pair at the dynein-microtubule interface is critical for dynein motility and ATPase activation
J.Cell Biol., 208, 2015
1JUD
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BU of 1jud by Molmil
L-2-HALOACID DEHALOGENASE
Descriptor: L-2-HALOACID DEHALOGENASE
Authors:Hisano, T, Hata, Y, Fujii, T, Liu, J.-Q, Kurihara, T, Esaki, N, Soda, K.
Deposit date:1996-06-03
Release date:1996-12-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
J.Biol.Chem., 271, 1996
4A6J
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BU of 4a6j by Molmil
Structural model of ParM filament based on CryoEM map
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PLASMID SEGREGATION PROTEIN PARM
Authors:Gayathri, P, Fujii, T, Moller-Jensen, J, Van Den Ent, F, Namba, K, Lowe, J.
Deposit date:2011-11-04
Release date:2012-11-21
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:A Bipolar Spindle of Antiparallel Parm Filaments Drives Bacterial Plasmid Segregation.
Science, 338, 2012
1IEI
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BU of 1iei by Molmil
CRYSTAL STRUCTURE OF HUMAN ALDOSE REDUCTASE COMPLEXED WITH THE INHIBITOR ZENARESTAT.
Descriptor: ALDOSE REDUCTASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, [3-(4-BROMO-2-FLUORO-BENZYL)-7-CHLORO-2,4-DIOXO-3,4-DIHYDRO-2H-QUINAZOLIN-1-YL]-ACETIC ACID
Authors:Kinoshita, T, Miyake, H, Fujii, T, Takakura, S, Goto, T.
Deposit date:2001-04-09
Release date:2002-04-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of human recombinant aldose reductase complexed with the potent inhibitor zenarestat.
Acta Crystallogr.,Sect.D, 58, 2002
3J82
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BU of 3j82 by Molmil
Electron cryo-microscopy of DNGR-1 in complex with F-actin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Hanc, P, Fujii, T, Yamada, Y, Huotari, J, Schulz, O, Ahrens, S, Kjaer, S, Way, M, Namba, K, Reis e Sousa, C.
Deposit date:2014-09-25
Release date:2015-05-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structure of the Complex of F-Actin and DNGR-1, a C-Type Lectin Receptor Involved in Dendritic Cell Cross-Presentation of Dead Cell-Associated Antigens.
Immunity, 42, 2015
8IDP
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BU of 8idp by Molmil
Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
Deposit date:2023-02-14
Release date:2023-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
8IDQ
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BU of 8idq by Molmil
Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus with xylose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
Deposit date:2023-02-14
Release date:2023-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
5XDH
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BU of 5xdh by Molmil
His/DOPA ligated cytochrome c from an anammox organism KSU-1
Descriptor: ACETATE ION, HEME C, Putative cytochrome c, ...
Authors:Hira, D, Kitamura, R, Nakamura, T, Yamagata, Y, Furukawa, K, Fujii, T.
Deposit date:2017-03-28
Release date:2018-03-28
Last modified:2019-10-02
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Anammox Organism KSU-1 Expresses a Novel His/DOPA Ligated Cytochrome c.
J. Mol. Biol., 430, 2018

 

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