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1F75
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CRYSTAL STRUCTURE OF UNDECAPRENYL DIPHOSPHATE SYNTHASE FROM MICROCOCCUS LUTEUS B-P 26
Descriptor:UNDECAPRENYL PYROPHOSPHATE SYNTHETASE, SULFATE ION
Authors:Fujihashi, M., Zhang, Y.-W., Higuchi, Y., Li, X.-Y., Koyama, T., Miki, K.
Deposit date:2000-06-26
Release date:2001-03-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase.
Proc.Natl.Acad.Sci.USA, 98, 2001
1IUB
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FUCOSE-SPECIFIC LECTIN FROM ALEURIA AURANTIA (HG-DERIVATIVE FORM)
Descriptor:Fucose-specific lectin, BETA-L-FUCOSE, SULFATE ION, ...
Authors:Fujihashi, M., Peapus, D.H., Kamiya, N., Nagata, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-01
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites
Biochemistry, 42, 2003
1IUC
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FUCOSE-SPECIFIC LECTIN FROM ALEURIA AURANTIA WITH THREE LIGANDS
Descriptor:Fucose-specific lectin, BETA-L-FUCOSE, ALPHA-L-FUCOSE, ...
Authors:Fujihashi, M., Peapus, D.H., Kamiya, N., Nagata, Y., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-01
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites
Biochemistry, 42, 2003
2E0I
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CRYSTAL STRUCTURE OF ARCHAEAL PHOTOLYASE FROM SULFOLOBUS TOKODAII WITH TWO FAD MOLECULES: IMPLICATION OF A NOVEL LIGHT-HARVESTING COFACTOR
Descriptor:432aa long hypothetical deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Fujihashi, M., Numoto, N., Kobayashi, Y., Mizushima, A., Tsujimura, M., Nakamura, A., Kawarabayashi, Y., Miki, K.
Deposit date:2006-10-10
Release date:2006-11-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of Archaeal Photolyase from Sulfolobus tokodaii with Two FAD Molecules: Implication of a Novel Light-harvesting Cofactor
J.Mol.Biol., 365, 2007
2ZZ1
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SNAPSHOT OF THE REACTION FROM 6-CN-UMP TO BMP CATALYZED BY OROTIDINE MONOPHOSPHATE DEACARBOXYLASE FROM M. THERMOAUTOTROPHICUM
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-HYDROXYURIDINE-5'-PHOSPHATE, 6-cyanouridine 5'-phosphate, ...
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
2ZZ2
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OROTIDINE MONOPHOSPHATE DECARBOXYLASE K72A MUTANT FROM M. THERMOAUTOTROPHICUM COMPLEXED WITH 6-CYANO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-cyanouridine 5'-phosphate, GLYCEROL
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
2ZZ3
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COVALENT COMPLEX OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE D70A MUTANT FROM M. THERMOAUTOTROPHICUS WITH 6-CYANO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-cyanouridine 5'-phosphate, GLYCEROL
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
2ZZ4
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COVALENT COMPLEX OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE D75N MUTANT FROM M. THERMOAUTOTROPHICUM WITH 6-CYANO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-cyanouridine 5'-phosphate, GLYCEROL
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
2ZZ5
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OROTIDINE MONOPHOSPHATE DEACARBOXYLASE D70A/K72A DOUBLE MUTANT FROM M. THERMOAUTOTROPHICUM COMPLEXED WITH 6- CYANO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-cyanouridine 5'-phosphate
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
2ZZ6
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COVALENT COMPLEX OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE FROM M. THERMOAUTOTROPHICUM WITH 6-AZIDO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-azidouridine 5'-(dihydrogen phosphate), GLYCEROL
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
3WJW
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WILD-TYPE OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH 6-METHYL-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-methyluridine 5'-(dihydrogen phosphate)
Authors:Fujihashi, M., Kuroda, S., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WJX
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WILD-TYPE OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH 6-AMINO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-AMINOURIDINE 5'-MONOPHOSPHATE, GLYCEROL
Authors:Fujihashi, M., Kuroda, S., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WJY
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OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE K72A MUTANT FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH 6-AMINO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-AMINOURIDINE 5'-MONOPHOSPHATE, GLYCEROL
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WJZ
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OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE D75N MUTANT FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH 6-AMINO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-AMINOURIDINE 5'-MONOPHOSPHATE, CHLORIDE ION, ...
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WK0
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WILD-TYPE OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH OROTIDINE 5'-MONOPHOSPHATE METHYL ESTER
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-(methoxycarbonyl)uridine 5'-(dihydrogen phosphate), GLYCEROL
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WK1
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WILD-TYPE OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH OROTIDINE 5'-MONOPHOSPHATE ETHYL ESTER
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-(ethoxycarbonyl)uridine 5'-(dihydrogen phosphate), GLYCEROL
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WK2
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OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE K72A MUTANT FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH OROTIDINE 5'-MONOPHOSPHATE METHYL ESTER
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-(methoxycarbonyl)uridine 5'-(dihydrogen phosphate), GLYCEROL
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
3WK3
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OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE K72A MUTANT FROM M. THERMOAUTOTROPHICUS COMPLEXED WITH OROTIDINE 5'-MONOPHOSPHATE ETHYL ESTER
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-(ethoxycarbonyl)uridine 5'-(dihydrogen phosphate), GLYCEROL
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2013-10-17
Release date:2013-12-04
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Substrate distortion contributes to the catalysis of orotidine 5'-monophosphate decarboxylase.
J.Am.Chem.Soc., 135, 2013
5YO8
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CRYSTAL STRUCTURE OF BETA-C25/C30/C35-PRENE SYNTHASE
Descriptor:Tetraprenyl-beta-curcumene synthase
Authors:Fujihashi, M., Miki, K.
Deposit date:2017-10-27
Release date:2018-05-09
Last modified:2018-05-16
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure and functional analysis of large-terpene synthases belonging to a newly found subclass.
Chem Sci, 9, 2018
1X1Z
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OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE (ODCASE) COMPLEXED WITH BMP (PRODUCED FROM 6-CYANOUMP)
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-HYDROXYURIDINE-5'-PHOSPHATE, GLYCEROL
Authors:Fujihashi, M., Bello, A.M., Poduch, E., Wei, L., Annedi, S.C., Pai, E.F., Kotra, L.P.
Deposit date:2005-04-15
Release date:2005-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:An unprecedented twist to ODCase catalytic activity
J.Am.Chem.Soc., 127, 2005
2ZZ7
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OROTIDINE MONOPHOSPHATE DECARBOXYLASE K72A MUTANT COMPLEXED WITH BMP (PRODUCED FROM 6-IODO-UMP)
Descriptor:Orotidine 5'-phosphate decarboxylase, 6-HYDROXYURIDINE-5'-PHOSPHATE, GLYCEROL
Authors:Fujihashi, M., Pai, E.F.
Deposit date:2009-02-05
Release date:2009-03-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase
J.Mol.Biol., 387, 2009
3W07
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ATOMIC RESOLUTION STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM METHANOTHERMOBACTER THERMOAUTOTROPHICUS BOUND WITH UMP.
Descriptor:Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE, GLYCEROL
Authors:Fujihashi, M., Pai, E.F., Miki, K.
Deposit date:2012-10-22
Release date:2013-02-20
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism.
J.Biol.Chem., 288, 2013
3WHB
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CRYSTAL STRUCTURE OF FADR FROM BACILLUS SUBTILIS, A TRANSCRIPTIONAL REGULATOR INVOLVED IN THE REGULATION OF FATTY ACID DEGRADATION
Descriptor:Fatty acid metabolism regulator protein, DODECYL-COA
Authors:Fujihashi, M., Nakatani, T., Miki, K.
Deposit date:2013-08-23
Release date:2014-03-19
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.
Proteins, 82, 2014
3WHC
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CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL REGULATOR FADR FROM BACILLUS SUBTILIS IN COMPLEX WITH STEAROYL-COA
Descriptor:Fatty acid metabolism regulator protein, STEAROYL-COENZYME A
Authors:Fujihashi, M., Nakatani, T., Miki, K.
Deposit date:2013-08-23
Release date:2014-03-19
Last modified:2017-02-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural characterization of a ligand-bound form of Bacillus subtilis FadR involved in the regulation of fatty acid degradation.
Proteins, 82, 2014
2E6Y
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COVALENT COMPLEX OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE (ODCASE) WITH 6-IODO-UMP
Descriptor:Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE, GLYCEROL
Authors:Fujihashi, M., Bello, A.M., Kotra, L.P., Pai, E.F.
Deposit date:2007-01-05
Release date:2007-02-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A Potent, Covalent Inhibitor of Orotidine 5'-Monophosphate Decarboxylase with Antimalarial Activity.
J.Med.Chem., 50, 2007
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